4.6 Article

Inferring Population Size History from Large Samples of Genome-Wide Molecular Data - An Approximate Bayesian Computation Approach

Related references

Note: Only part of the references are listed.
Article Genetics & Heredity

Inferring Bottlenecks from Genome-Wide Samples of Short Sequence Blocks

Lynsey Bunnefeld et al.

GENETICS (2015)

Article Genetics & Heredity

Exploring population size changes using SNP frequency spectra

Xiaoming Liu et al.

NATURE GENETICS (2015)

Article Evolutionary Biology

Detecting past changes of effective population size

Natacha Nikolic et al.

EVOLUTIONARY APPLICATIONS (2014)

Article Genetics & Heredity

Inferring human population size and separation history from multiple genome sequences

Stephan Schiffels et al.

NATURE GENETICS (2014)

Article Multidisciplinary Sciences

Drastic population fluctuations explain the rapid extinction of the passenger pigeon

Chih-Ming Hung et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Multidisciplinary Sciences

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs

Richard E. Green et al.

SCIENCE (2014)

Article Genetics & Heredity

A General Approach for Haplotype Phasing across the Full Spectrum of Relatedness

Jared O'Connell et al.

PLOS GENETICS (2014)

Article Agriculture, Dairy & Animal Science

Accurate Estimation of Effective Population Size in the Korean Dairy Cattle Based on Linkage Disequilibrium Corrected by Genomic Relationship Matrix

Dong-Hyun Shin et al.

ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES (2013)

Article Biochemistry & Molecular Biology

Inferring Demography from Runs of Homozygosity in Whole-Genome Sequence, with Correction for Sequence Errors

Iona M. MacLeod et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Review Statistics & Probability

A Comparative Review of Dimension Reduction Methods in Approximate Bayesian Computation

M. G. B. Blum et al.

STATISTICAL SCIENCE (2013)

Article Genetics & Heredity

Inferring Demographic History from a Spectrum of Shared Haplotype Lengths

Kelley Harris et al.

PLOS GENETICS (2013)

Article Genetics & Heredity

Robust Demographic Inference from Genomic and SNP Data

Laurent Excoffier et al.

PLOS GENETICS (2013)

Article Agriculture, Dairy & Animal Science

Methods to estimate effective population size using pedigree data: Examples in dog, sheep, cattle and horse

Gregoire Leroy et al.

GENETICS SELECTION EVOLUTION (2013)

Article Agriculture, Dairy & Animal Science

High-density marker imputation accuracy in sixteen French cattle breeds

Chris Hoze et al.

GENETICS SELECTION EVOLUTION (2013)

Article Agriculture, Dairy & Animal Science

Estimation of historical effective population size using linkage disequilibria with marker data

L. J. Corbin et al.

JOURNAL OF ANIMAL BREEDING AND GENETICS (2012)

Article Biochemistry & Molecular Biology

Inferring the History of Population Size Change from Genome-Wide SNP Data

Christoph Theunert et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Article Biochemistry & Molecular Biology

Recent population decline and selection shape diversity of taxol-related genes

C. Burgarella et al.

MOLECULAR ECOLOGY (2012)

Article Multidisciplinary Sciences

Analyses of pig genomes provide insight into porcine demography and evolution

Martien A. M. Groenen et al.

NATURE (2012)

Article Multidisciplinary Sciences

Genetic data suggest a natural prehuman origin of open habitats in northern Madagascar and question the deforestation narrative in this region

Erwan Quemere et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Ecology

abc: an R package for approximate Bayesian computation (ABC)

Katalin Csillery et al.

METHODS IN ECOLOGY AND EVOLUTION (2012)

Article Genetics & Heredity

Genetic Variants in REC8, RNF212, and PRDM9 Influence Male Recombination in Cattle

Cynthia Sandor et al.

PLOS GENETICS (2012)

Article Genetics & Heredity

GCTA: A Tool for Genome-wide Complex Trait Analysis

Jian Yang et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2011)

Review Biochemistry & Molecular Biology

Skyline-plot methods for estimating demographic history from nucleotide sequences

Simon Y. W. Ho et al.

MOLECULAR ECOLOGY RESOURCES (2011)

Article Multidisciplinary Sciences

Inference of human population history from individual whole-genome sequences

Heng Li et al.

NATURE (2011)

Article Multidisciplinary Sciences

Species-specific responses of Late Quaternary megafauna to climate and humans

Eline D. Lorenzen et al.

NATURE (2011)

Article Biochemistry & Molecular Biology

Demographic History of Oceania Inferred from Genome-wide Data

Andreas Wollstein et al.

CURRENT BIOLOGY (2010)

Article Agriculture, Dairy & Animal Science

Effective population size of an indigenous Swiss cattle breed estimated from linkage disequilibrium

C. Flury et al.

JOURNAL OF ANIMAL BREEDING AND GENETICS (2010)

Article Biochemistry & Molecular Biology

Distinguishing between population bottleneck and population subdivision by a Bayesian model choice procedure

Benjamin M. Peter et al.

MOLECULAR ECOLOGY (2010)

Article Multidisciplinary Sciences

Insights into the Genetic History of French Cattle from Dense SNP Data on 47 Worldwide Breeds

Mathieu Gautier et al.

PLOS ONE (2010)

Article Computer Science, Theory & Methods

Non-linear regression models for Approximate Bayesian Computation

Michael G. B. Blum et al.

STATISTICS AND COMPUTING (2010)

Review Ecology

Approximate Bayesian Computation (ABC) in practice

Katalin Csillery et al.

TRENDS IN ECOLOGY & EVOLUTION (2010)

Article Genetics & Heredity

Linkage Disequilibrium Between Loci With Unknown Phase

Alan R. Rogers et al.

GENETICS (2009)

Article Multidisciplinary Sciences

Genome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds

Richard A. Gibbs et al.

SCIENCE (2009)

Article Biochemical Research Methods

Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation

Jean-Marie Cornuet et al.

BIOINFORMATICS (2008)

Article Multidisciplinary Sciences

Domestication and early agriculture in the Mediterranean Basin: Origins, diffusion, and impact

Melinda A. Zeder

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Genetics & Heredity

Fast coalescent simulation

P Marjoram et al.

BMC GENETICS (2006)

Article Biology

Approximating the coalescent with recombination

GAT McVean et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2005)

Article Agriculture, Dairy & Animal Science

Inbreeding in Danish dairy cattle breeds

AC Sorensen et al.

JOURNAL OF DAIRY SCIENCE (2005)

Article Biochemistry & Molecular Biology

Novel multilocus measure of linkage disequilibrium to estimate past effective population size

BJ Hayes et al.

GENOME RESEARCH (2003)

Article Biochemistry & Molecular Biology

Interrogating a high-density SNP map for signatures of natural selection

JM Akey et al.

GENOME RESEARCH (2002)

Article Biochemical Research Methods

Generating samples under a Wright-Fisher neutral model of genetic variation

RR Hudson

BIOINFORMATICS (2002)