Related references
Note: Only part of the references are listed.Coregulation of tandem duplicate genes slows evolution of subfunctionalization in mammals
Xun Lan et al.
SCIENCE (2016)
Rapid divergence and diversification of mammalian duplicate gene functions
Raquel Assis et al.
BMC EVOLUTIONARY BIOLOGY (2015)
Most Highly Expressed Protein-Coding Genes Have a Single Dominant Isoform
Iakes Ezkurdia et al.
JOURNAL OF PROTEOME RESEARCH (2015)
Maintenance and Loss of Duplicated Genes by Dosage Subfunctionalization
Jean-Francois Gout et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Tissue-Specific Evolution of Protein Coding Genes in Human and Mouse
Nadezda Kryuchkova-Mostacci et al.
PLOS ONE (2015)
Gene Family Level Comparative Analysis of Gene Expression in Mammals Validates the Ortholog Conjecture
Igor B. Rogozin et al.
GENOME BIOLOGY AND EVOLUTION (2014)
Comparison of D. melanogaster and C. elegans developmental stages, tissues, and cells by modENCODE RNA-seq data
Jingyi Jessica Li et al.
GENOME RESEARCH (2014)
Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics
Linn Fagerberg et al.
MOLECULAR & CELLULAR PROTEOMICS (2014)
Genome-wide identification of transcript start and end sites by transcript isoform sequencing
Vicent Pelechano et al.
NATURE PROTOCOLS (2014)
Evolutionary dynamics of coding and non-coding transcriptomes
Anamaria Necsulea et al.
NATURE REVIEWS GENETICS (2014)
Current status and new features of the Consensus Coding Sequence database
Catherine M. Farrell et al.
NUCLEIC ACIDS RESEARCH (2014)
Functional and evolutionary implications of gene orthology
Toni Gabaldon et al.
NATURE REVIEWS GENETICS (2013)
Ensembl 2013
Paul Flicek et al.
NUCLEIC ACIDS RESEARCH (2013)
Correcting for the bias due to expression specificity improves the estimation of constrained evolution of expression between mouse and human
Barbara Piasecka et al.
BIOINFORMATICS (2012)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
Evolutionary Dynamics of Gene and Isoform Regulation in Mammalian Tissues
Jason Merkin et al.
SCIENCE (2012)
Mechanisms and Evolutionary Patterns of Mammalian and Avian Dosage Compensation
Philippe Julien et al.
PLOS BIOLOGY (2012)
On the Use of Gene Ontology Annotations to Assess Functional Similarity among Orthologs and Paralogs: A Short Report
Paul D. Thomas et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
The Ortholog Conjecture Is Untestable by the Current Gene Ontology but Is Supported by RNA Sequencing Data
Xiaoshu Chen et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Resolving the Ortholog Conjecture: Orthologs Tend to Be Weakly, but Significantly, More Similar in Function than Paralogs
Adrian M. Altenhoff et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Evidence for short-time divergence and long-time conservation of tissue-specific expression after gene duplication
Jaime Huerta-Cepas et al.
BRIEFINGS IN BIOINFORMATICS (2011)
The Split-Apply-Combine Strategy for Data Analysis
Hadley Wickham
JOURNAL OF STATISTICAL SOFTWARE (2011)
The evolution of gene expression levels in mammalian organs
David Brawand et al.
NATURE (2011)
Mouse genomic variation and its effect on phenotypes and gene regulation
Thomas M. Keane et al.
NATURE (2011)
A User's Guide to the Encyclopedia of DNA Elements (ENCODE)
Richard M. Myers et al.
PLOS BIOLOGY (2011)
Testing the Ortholog Conjecture with Comparative Functional Genomic Data from Mammals
Nathan L. Nehrt et al.
PLOS COMPUTATIONAL BIOLOGY (2011)
Large-Scale Analysis of Orthologs and Paralogs under Covarion-Like and Constant-but-Different Models of Amino Acid Evolution
Romain A. Studer et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
Albert J. Vilella et al.
GENOME RESEARCH (2009)
How confident can we be that orthologs are similar, but paralogs differ?
Romain A. Studer et al.
TRENDS IN GENETICS (2009)
Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes
Romain A. Studer et al.
GENOME RESEARCH (2008)
TimeTree: a public knowledge-base of divergence times among organisms
S. Blair Hedges et al.
BIOINFORMATICS (2006)
Evolutionary conservation of expression profiles between human and mouse orthologous genes
BY Liao et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Fast-Find: A novel computational approach to analyzing combinatorial motifs
M Hamady et al.
BMC BIOINFORMATICS (2006)
Do disparate mechanisms of duplication add similar genes to the genome?
JC Davis et al.
TRENDS IN GENETICS (2005)
Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification
I Yanai et al.
BIOINFORMATICS (2005)
Incongruent expression profiles between human and mouse orthologous genes suggest widespread neutral evolution of transcription control
I Yanai et al.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2004)
Divergence of spatial gene expression profiles following species-specific gene duplications in human and mouse
L Huminiecki et al.
GENOME RESEARCH (2004)
Duplicate genes increase gene expression diversity within and between species
ZL Gu et al.
NATURE GENETICS (2004)
Share Paper
