Related references
Note: Only part of the references are listed.Mapping Allostery through Computational Glycine Scanning and Correlation Analysis of Residue-Residue Contacts
Quentin R. Johnson et al.
BIOCHEMISTRY (2015)
Dynamics and thermodynamic properties of CXCL7 chemokine
Charles A. Herring et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2015)
Allosteric sites can be identified based on the residue-residue interaction energy difference
Xiaomin Ma et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2015)
Sparse networks of directly coupled, polymorphic, and functional side chains in allosteric proteins
Laleh Soltan Ghoraie et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2015)
Identifying Key Residues for Protein Allostery through Rigid Residue Scan
Robert Kalescky et al.
JOURNAL OF PHYSICAL CHEMISTRY A (2015)
Principles of Allosteric Interactions in Cell Signaling
Ruth Nussinov et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2014)
The ensemble nature of allostery
Hesam N. Motlagh et al.
NATURE (2014)
Redistribution of Flexibility in Stabilizing Antibody Fragment Mutants Follows Le Chatelier's Principle
Tong Li et al.
PLOS ONE (2014)
A Unified View of How Allostery Works
Chung-Jung Tsai et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
The Underappreciated Role of Allostery in the Cellular Network
Ruth Nussinov et al.
ANNUAL REVIEW OF BIOPHYSICS, VOL 42 (2013)
Emerging computational approaches for the study of protein allostery
Galen Collier et al.
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS (2013)
Allostery in Disease and in Drug Discovery
Ruth Nussinov et al.
CELL (2013)
The role of allostery in the ubiquitin-proteasome system
Jin Liu et al.
CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY (2013)
A Mixed Protein Structure Network and Elastic Network Model Approach to Predict the Structural Communication in Biomolecular Systems: The PDZ2 Domain from Tyrosine Phosphatase 1E As a Case Study
Francesco Raimondi et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2013)
Solution NMR and Computational Methods for Understanding Protein Allostery
Gregory Manley et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2013)
MCPath: Monte Carlo path generation approach to predict likely allosteric pathways and functional residues
Cihan Kaya et al.
NUCLEIC ACIDS RESEARCH (2013)
Surface Dynamics in Allosteric Regulation of Protein-Protein Interactions: Modulation of Calmodulin Functions by Ca2+
Yosef Y. Kuttner et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
Allostery and the Monod-Wyman-Changeux Model After 50 Years
Jean-Pierre Changeux
ANNUAL REVIEW OF BIOPHYSICS, VOL 41 (2012)
Structural and Energetic Basis of Allostery
Vincent J. Hilser et al.
ANNUAL REVIEW OF BIOPHYSICS, VOL 41 (2012)
Allostery and cooperativity in Escherichia coli aspartate transcarbamoylase
Evan R. Kantrowitz
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS (2012)
Maintain rigid structures in Verlet based Cartesian molecular dynamics simulations
Peng Tao et al.
JOURNAL OF CHEMICAL PHYSICS (2012)
Protein Allostery at the Solid-Liquid Interface: Endoglucanase Attachment to Cellulose Affects Glucan Clenching in the Binding Cleft
Yuchun Lin et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2011)
Atomistic Kinetic Model for Population Shift and Allostery in Biomolecules
Dong Long et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2011)
Correlating allostery with rigidity
A. J. Rader et al.
MOLECULAR BIOSYSTEMS (2011)
A geometry-based generic predictor for catalytic and allosteric sites
Simon Mitternacht et al.
PROTEIN ENGINEERING DESIGN & SELECTION (2011)
Change in Allosteric Network Affects Binding Affinities of PDZ Domains: Analysis through Perturbation Response Scanning
Z. Nevin Gerek et al.
PLOS COMPUTATIONAL BIOLOGY (2011)
Global Dynamics of Proteins: Bridging Between Structure and Function
Ivet Bahar et al.
ANNUAL REVIEW OF BIOPHYSICS, VOL 39 (2010)
Crystallographic and Nuclear Magnetic Resonance Evaluation of the Impact of Peptide Binding to the Second PDZ Domain of Protein Tyrosine Phosphatase 1E
Jun Zhang et al.
BIOCHEMISTRY (2010)
Allosteric Response Is both Conserved and Variable across Three CheY Orthologs
James M. Mottonen et al.
BIOPHYSICAL JOURNAL (2010)
Interaction Energy Based Protein Structure Networks
M. S. Vijayabaskar et al.
BIOPHYSICAL JOURNAL (2010)
Protein dynamics investigated by inherent structure analysis
Francesco Rao et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Folding and binding cascades: Dynamic landscapes and population shifts
Sandeep Kumar et al.
PROTEIN SCIENCE (2010)
CHARMM: The Biomolecular Simulation Program
B. R. Brooks et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2009)
Protein allostery, signal transmission and dynamics: a classification scheme of allosteric mechanisms
Chung-Jung Tsai et al.
MOLECULAR BIOSYSTEMS (2009)
Signaling pathways of PDZ2 domain: A molecular dynamics interaction correlation analysis
Yifei Kong et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)
The Origin of Allosteric Functional Modulation: Multiple Pre-existing Pathways
Antonio del Sol et al.
STRUCTURE (2009)
Computation of Conformational Coupling in Allosteric Proteins
Brian A. Kidd et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Structure-Based Predictive Models for Allosteric Hot Spots
Omar N. A. Demerdash et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Dynamic Allostery in the Methionine Repressor Revealed by Force Distribution Analysis
Wolfram Stacklies et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Allosteric Communication Occurs via Networks of Tertiary and Quaternary Motions in Proteins
Michael D. Daily et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
The structure of a mutant insulin uncouples receptor binding from protein allostery - An electrostatic block to the TR transition
Zhu-li Wan et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2008)
An allosteric circuit in caspase-1
Debajyoti Datta et al.
JOURNAL OF MOLECULAR BIOLOGY (2008)
Engineering protein allostery:: 1.05Å resolution structure and enzymatic properties of a Na+-activated trypsin
Michael J. Page et al.
JOURNAL OF MOLECULAR BIOLOGY (2008)
Allostery: Absence of a change in shape does not imply that allostery is not at play
Chung-Jung Tsai et al.
JOURNAL OF MOLECULAR BIOLOGY (2008)
Allosteric regulation and catalysis emerge via a common route
Nina M. Goodey et al.
NATURE CHEMICAL BIOLOGY (2008)
Allostery and cooperativity revisited
Qiang Cui et al.
PROTEIN SCIENCE (2008)
The origin of protein interactions and allostery in colocalization
John Kuriyan et al.
NATURE (2007)
Identifying allosteric fluctuation transitions between different protein conformational states as applied to Cyclin Dependent Kinase 2
Jenny Gu et al.
BMC BIOINFORMATICS (2007)
Pump-probe molecular dynamics as a tool for studying protein motion and long range coupling
Kim Sharp et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)
Coupling of global and local vibrational modes in dynamic allostery of proteins
Rhoda J. Hawkins et al.
BIOPHYSICAL JOURNAL (2006)
Allostery of the two-state model of hemoglobin studied by ECEPP energy minimization
Y Seno
JOURNAL OF COMPUTATIONAL CHEMISTRY (2006)
Intramolecular signaling pathways revealed by modeling anisotropic thermal diffusion
N Ota et al.
JOURNAL OF MOLECULAR BIOLOGY (2005)
Functional dynamics of PDZ binding domains: A normal-mode analysis
P De Los Rios et al.
BIOPHYSICAL JOURNAL (2005)
Allosteric mechanisms of signal transduction
JP Changeux et al.
SCIENCE (2005)
Ligand-dependent dynamics and intramolecular signaling in a PDZ domain
EJ Fuentes et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
NMR study of nucleotide-induced changes in the nucleotide binding domain of Thermus thermophilus Hsp70 chaperone DnaK -: Implications for the allosteric mechanism
M Revington et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
Is allostery an intrinsic property of all dynamic proteins?
K Gunasekaran et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2004)
Allosteric transitions of Torpedo acetylcholine receptor in lipids, detergent and amphipols:: molecular interactions vs. physical constraints
KL Martinez et al.
FEBS LETTERS (2002)
On the calculation of entropy from covariance matrices of the atomic fluctuations
I Andricioaei et al.
JOURNAL OF CHEMICAL PHYSICS (2001)
Propagating conformational changes over long (and short) distances in proteins
EW Yu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Protein flexibility predictions using graph theory
DJ Jacobs et al.
PROTEINS-STRUCTURE FUNCTION AND GENETICS (2001)
Two-state allosteric behavior in a single-domain signaling protein
BF Volkman et al.
SCIENCE (2001)
Anisotropy of fluctuation dynamics of proteins with an elastic network model
AR Atilgan et al.
BIOPHYSICAL JOURNAL (2001)
Absolute entropies from molecular dynamics simulation trajectories
H Schäfer et al.
JOURNAL OF CHEMICAL PHYSICS (2000)
Binding sites in Escherichia coli dihydrofolate reductase communicate by modulating the conformational ensemble
H Pan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)
Share Paper
