Peptidomics

Peptidomics employs techniques of genomics, modern proteomics, state-of-the-art analytical chemistry and computational biology. In this Primer, Hellinger et al. describe the techniques and workflows required for peptide discovery and characterization and give an overview of biological and clinical applications of peptidomics. Peptides are biopolymers, typically consisting of 2-50 amino acids. They are biologically produced by the cellular ribosomal machinery or by non-ribosomal enzymes and, sometimes, other dedicated ligases. Peptides are arranged as linear chains or cycles, and include post-translational modifications, unusual amino acids and stabilizing motifs. Their structure and molecular size render them a unique chemical space, between small molecules and larger proteins. Peptides have important physiological functions as intrinsic signalling molecules, such as neuropeptides and peptide hormones, for cellular or interspecies communication, as toxins to catch prey or as defence molecules to fend off enemies and microorganisms. Clinically, they are gaining popularity as biomarkers or innovative therapeutics; to date there are more than 60 peptide drugs approved and more than 150 in clinical development. The emerging field of peptidomics comprises the comprehensive qualitative and quantitative analysis of the suite of peptides in a biological sample (endogenously produced, or exogenously administered as drugs). Peptidomics employs techniques of genomics, modern proteomics, state-of-the-art analytical chemistry and innovative computational biology, with a specialized set of tools. The complex biological matrices and often low abundance of analytes typically examined in peptidomics experiments require optimized sample preparation and isolation, including in silico analysis. This Primer covers the combination of techniques and workflows needed for peptide discovery and characterization and provides an overview of various biological and clinical applications of peptidomics.

Automated summary

Peptidomics combines genomics, modern proteomics, analytical chemistry, and computational biology techniques for peptide discovery and characterization. Peptides are biopolymers composed of 2-50 amino acids, often produced by cellular machinery or enzymes. They play important physiological roles as signaling molecules and toxins, and have emerging applications in biomarker discovery and therapeutics. Peptidomics involves qualitative and quantitative analysis of peptides in biological samples using a specialized set of tools and workflows.