Related references
Note: Only part of the references are listed.Where whole-genome duplication is most beneficial: Adaptation of mangroves to a wide salinity range between land and sea
Shaohua Xu et al.
MOLECULAR ECOLOGY (2023)
Genome-Wide Identification of WRKY Genes and Their Responses to Chilling Stress in Kandelia obovata
Zhaokui Du et al.
FRONTIERS IN GENETICS (2022)
Evolution of coastal forests based on a full set of mangrove genomes
Ziwen He et al.
NATURE ECOLOGY & EVOLUTION (2022)
Genomic Characterization of WRKY Transcription Factors Related to Andrographolide Biosynthesis in Andrographis paniculata
Rongrong Zhang et al.
FRONTIERS IN GENETICS (2021)
Genomic insights into molecular adaptation to intertidal environments in the mangrove Aegiceras corniculatum
Xiao Feng et al.
NEW PHYTOLOGIST (2021)
Polyploidy: an evolutionary and ecological force in stressful times
Yves Van de Peer et al.
PLANT CELL (2021)
Genetic Contribution of Paleopolyploidy to Adaptive Evolution in Angiosperms
Shengdan Wu et al.
MOLECULAR PLANT (2020)
Genome-Wide Identification and Expression Profile Analysis of WRKY Family Genes in the Autopolyploid Saccharum spontaneum
Zhen Li et al.
PLANT AND CELL PHYSIOLOGY (2020)
Improved estimates on global carbon stock and carbon pools in tidal wetlands
Xiaoguang Ouyang et al.
NATURE COMMUNICATIONS (2020)
Molecular adaptation to salinity fluctuation in tropical intertidal environments of a mangrove tree Sonneratia alba
Feng Xiao et al.
BMC PLANT BIOLOGY (2020)
Convergent adaptation of the genomes of woody plants at the land-sea interface
Ziwen He et al.
NATIONAL SCIENCE REVIEW (2020)
Chromosome-scale assembly of the Kandelia obovata genome
Hu Min-Jie et al.
HORTICULTURE RESEARCH (2020)
Phylogenetic analysis and transcriptional profiling of WRKY genes in sunflower (Helianthus annuus L.): Genetic diversity and their responses to different biotic and abiotic stresses
Ake Liu et al.
INDUSTRIAL CROPS AND PRODUCTS (2020)
Regulation of a Cytochrome P450 Gene CYP94B1 by WRKY33 Transcription Factor Controls Apoplastic Barrier Formation in Roots to Confer Salt Tolerance
Pannaga Krishnamurthy et al.
PLANT PHYSIOLOGY (2020)
Quantifying net loss of global mangrove carbon stocks from 20 years of land cover change
Daniel R. Richards et al.
NATURE COMMUNICATIONS (2020)
Speciation with gene flow via cycles of isolation and migration: insights from multiple mangrove taxa
Ziwen He et al.
NATIONAL SCIENCE REVIEW (2019)
Calcium-activated 14-3-3 proteins as a molecular switch in salt stress tolerance
Zhijia Yang et al.
NATURE COMMUNICATIONS (2019)
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
Alexey M. Kozlov et al.
BIOINFORMATICS (2019)
Genome-Wide Analysis of WRKY Genes and Their Response to Hormone and Mechanic Stresses in Carrot
Hong Nan et al.
FRONTIERS IN GENETICS (2019)
Genome-Wide Identification of WRKY Genes and Their Response to Cold Stress in Coffea canephora
Xiangshu Dong et al.
FORESTS (2019)
The State of the World's Mangrove Forests: Past, Present, and Future
Daniel A. Friess et al.
Annual Review of Environment and Resources (2019)
Genome Sequence of Striga asiatica Provides Insight into the Evolution of Plant Parasitism
Satoko Yoshida et al.
CURRENT BIOLOGY (2019)
The genome of the medicinal plant Andrographis paniculata provides insight into the biosynthesis of the bioactive diterpenoid neoandrographolide
Wei Sun et al.
PLANT JOURNAL (2019)
OrthoFinder: phylogenetic orthology inference for comparative genomics
David M. Emms et al.
GENOME BIOLOGY (2019)
Genome structure and evolution of Antirrhinum majus L
Miaomiao Li et al.
NATURE PLANTS (2019)
Convergent adaptive evolution in marginal environments: unloading transposable elements as a common strategy among mangrove genomes
Haomin Lyu et al.
NEW PHYTOLOGIST (2018)
Revisiting the Role of Plant Transcription Factors in the Battle against Abiotic Stress
Sardar-Ali Khan et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2018)
Whole-Genome Duplication and Plant Macroevolution
James W. Clark et al.
TRENDS IN PLANT SCIENCE (2018)
WRKY transcription factors in legumes
Hui Song et al.
BMC PLANT BIOLOGY (2018)
Desiccation Tolerance Evolved through Gene Duplication and Network Rewiring in Lindernia
Robert VanBuren et al.
PLANT CELL (2018)
GGTREE: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data
Guangchuang Yu et al.
METHODS IN ECOLOGY AND EVOLUTION (2017)
WRKY transcription factors in plant responses to stresses
Jingjing Jiang et al.
JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2017)
The evolutionary significance of polyploidy
Yves Van de Peer et al.
NATURE REVIEWS GENETICS (2017)
Long-read sequencing uncovers the adaptive topography of a carnivorous plant genome
Tianying Lan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Genome assembly of the Pink Ipe (Handroanthus impetiginosus, Bignoniaceae), a highly valued, ecologically keystone Neotropical timber forest tree
Orzenil Bonfim Silva-Junior et al.
GIGASCIENCE (2017)
The origin, diversification and adaptation of a major mangrove clade (Rhizophoreae) revealed by whole-genome sequencing
Shaohua Xu et al.
NATIONAL SCIENCE REVIEW (2017)
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV
James W. Byng et al.
BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2016)
Abiotic Stress Signaling and Responses in Plants
Jian-Kang Zhu
CELL (2016)
WRKY transcription factor genes in wild rice Oryza nivara
Hengjian Xu et al.
DNA RESEARCH (2016)
Analysis of the Genome Sequence of the Medicinal Plant Salvia miltiorrhiza
Haibin Xu et al.
MOLECULAR PLANT (2016)
iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases
Yi Zheng et al.
MOLECULAR PLANT (2016)
WRKY Transcription Factors: Molecular Regulation and Stress Responses in Plants
Ujjal J. Phukan et al.
FRONTIERS IN PLANT SCIENCE (2016)
Botany of Mangroves, 2nd Edition
PB Tomlinson
BOTANY OF MANGROVES, 2ND EDITION (2016)
The evolution of WRKY transcription factors
Charles I. Rinerson et al.
BMC PLANT BIOLOGY (2015)
Soil salinization and waterlogging: A threat to environment and agricultural sustainability
Ajay Singh
ECOLOGICAL INDICATORS (2015)
Plant hormones in salt stress tolerance
Hojin Ryu et al.
JOURNAL OF PLANT BIOLOGY (2015)
Genetic mechanisms of abiotic stress tolerance that translate to crop yield stability
Michael V. Mickelbart et al.
NATURE REVIEWS GENETICS (2015)
The resurrection genome of Boea hygrometrica: A blueprint for survival of dehydration
Lihong Xiao et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
The Role of Ethylene in Plants Under Salinity Stress
Jian-Jun Tao et al.
FRONTIERS IN PLANT SCIENCE (2015)
HTSeq-a Python framework to work with high-throughput sequencing data
Simon Anders et al.
BIOINFORMATICS (2015)
GSDS 2.0: an upgraded gene feature visualization server
Bo Hu et al.
BIOINFORMATICS (2015)
Sinbase: An Integrated Database to Study Genomics, Genetics and Comparative Genomics in Sesamum indicum
Linhai Wang et al.
PLANT AND CELL PHYSIOLOGY (2015)
De Novo Assembly of Coding Sequences of the Mangrove Palm (Nypa fruticans) Using RNA-Seq and Discovery of Whole-Genome Duplications in the Ancestor of Palms
Ziwen He et al.
PLOS ONE (2015)
Phylogeny and the inference of evolutionary trajectories
Lillian Hancock et al.
JOURNAL OF EXPERIMENTAL BOTANY (2014)
Role of root hydrophobic barriers in salt exclusion of a mangrove plant Avicennia officinalis
Pannaga Krishnamurthy et al.
PLANT CELL AND ENVIRONMENT (2014)
The coffee genome provides insight into the convergent evolution of caffeine biosynthesis
France Denoeud et al.
SCIENCE (2014)
The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes
Shengyi Liu et al.
NATURE COMMUNICATIONS (2014)
Glutathione and proline can coordinately make plants withstand the joint attack of metal(loid) and salinity stresses
Naser A. Anjum et al.
FRONTIERS IN PLANT SCIENCE (2014)
Genome and transcriptome analysis of the grapevine (Vitis vinifera L.) WRKY gene family
Min Wang et al.
HORTICULTURE RESEARCH (2014)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
The Salt Overly Sensitive (SOS) Pathway: Established and Emerging Roles
Hongtao Ji et al.
MOLECULAR PLANT (2013)
The fate of duplicated genes in a polyploid plant genome
Anne Roulin et al.
PLANT JOURNAL (2013)
Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing
Uffe Hellsten et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
Daehwan Kim et al.
GENOME BIOLOGY (2013)
Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora and Solanum Sp.) and rosid (Vitis vinifera) clades
Romain Guyot et al.
BMC GENOMICS (2012)
Genome-wide analysis of WRKY transcription factors in Solanum lycopersicum
Shengxiong Huang et al.
MOLECULAR GENETICS AND GENOMICS (2012)
The tomato genome sequence provides insights into fleshy fruit evolution
Shusei Sato et al.
NATURE (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
Yupeng Wang et al.
NUCLEIC ACIDS RESEARCH (2012)
WRKY transcription factors: key components in abscisic acid signalling
Deena L. Rushton et al.
PLANT BIOTECHNOLOGY JOURNAL (2012)
Dual-Level Regulation of ACC Synthase Activity by MPK3/MPK6 Cascade and Its Downstream WRKY Transcription Factor during Ethylene Induction in Arabidopsis
Guojing Li et al.
PLOS GENETICS (2012)
ProtTest 3: fast selection of best-fit models of protein evolution
Diego Darriba et al.
BIOINFORMATICS (2011)
Status and distribution of mangrove forests of the world using earth observation satellite data
C. Giri et al.
GLOBAL ECOLOGY AND BIOGEOGRAPHY (2011)
Approximate Likelihood Calculation on a Phylogeny for Bayesian Estimation of Divergence Times
Mario dos Reis et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Physiological and biochemical responses in the leaves of two mangrove plant seedlings (Kandelia candel and Bruguiera gymnorrhiza) exposed to multiple heavy metals
Guo-Yong Huang et al.
JOURNAL OF HAZARDOUS MATERIALS (2010)
The evolution of gene duplications: classifying and distinguishing between models
Hideki Innan et al.
NATURE REVIEWS GENETICS (2010)
The Pfam protein families database
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2010)
WRKY transcription factors
Paul J. Rushton et al.
TRENDS IN PLANT SCIENCE (2010)
KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies
Dapeng Wang et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2010)
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III
Birgitta Bremer et al.
BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2009)
Testing the ratio of two Poisson rates
Kangxia Gu et al.
BIOMETRICAL JOURNAL (2008)
Lindernia brevidens:: a novel desiccation-tolerant vascular plant, endemic to ancient tropical rainforests
Jonathan R. Phillips et al.
PLANT JOURNAL (2008)
The enigmatic LEA proteins and other hydrophilins
Marina Battaglia et al.
PLANT PHYSIOLOGY (2008)
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
Olivier Jaillon et al.
NATURE (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
The WRKY gene family in rice (Oryza sativa)
Christian A. Ross et al.
JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2007)
Crosstalk between abiotic and biotic stress responses: a current view from the points of convergence in the stress signaling networks
Miki Fujita et al.
CURRENT OPINION IN PLANT BIOLOGY (2006)
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
Mikita Suyama et al.
NUCLEIC ACIDS RESEARCH (2006)
Two rounds of whole genome duplication in the ancestral vertebrate
P Dehal et al.
PLOS BIOLOGY (2005)
Transcription factor families have much higher expansion rates in plants than in animals
SH Shiu et al.
PLANT PHYSIOLOGY (2005)
The WRKY family of transcription factors in rice and Arabidopsis and their origins
KL Wu et al.
DNA RESEARCH (2005)
Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution
G Blanc et al.
PLANT CELL (2004)
WRKY transcription factors:: from DNA binding towards biological function
B Ülker et al.
CURRENT OPINION IN PLANT BIOLOGY (2004)
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
S Guindon et al.
SYSTEMATIC BIOLOGY (2003)
Transcription regulation and animal diversity
M Levine et al.
NATURE (2003)
Plant responses to drought, salinity and extreme temperatures: towards genetic engineering for stress tolerance
WX Wang et al.
PLANTA (2003)
Abiotic stress signal transduction in plants: Molecular and genetic perspectives
LM Xiong et al.
PHYSIOLOGIA PLANTARUM (2001)
The WRKY superfamily of plant transcription factors
T Eulgem et al.
TRENDS IN PLANT SCIENCE (2000)
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
J Castresana
MOLECULAR BIOLOGY AND EVOLUTION (2000)