4.7 Article

Virome reveals effect of Ulva prolifera green tide on the structural and functional profiles of virus communities in coastal environments

Related references

Note: Only part of the references are listed.
Article Environmental Sciences

A new assessment of the algal biomass of green tide in the Yellow Sea

Chao Yuan et al.

Summary: The research team developed a model to predict the magnitude of Yellow Sea green tide more accurately, indicating that the potential maximum biomass is significantly higher than previously estimated. This will help in developing effective measures to reduce the impact of the green tide disaster.

MARINE POLLUTION BULLETIN (2022)

Article Environmental Sciences

Ulva macroalgae within local aquaculture ponds along the estuary of Dagu River, Jiaozhou Bay, Qingdao

Jinlin Liu et al.

Summary: Green macroalgal blooms caused by Ulva species have been affecting Shandong Province for 15 years, and a study in Qingdao found that multiple species of Ulva, including U. prolifera and U. meridionalis, were present in aquaculture ponds along the coast. This research highlights the importance of controlling the spread of these macroalgae to prevent further green tides in the region.

MARINE POLLUTION BULLETIN (2022)

Article Microbiology

Metagenomic Assessment of DNA Viral Diversity in Freshwater Sponges, Baikalospongia bacillifera

Tatyana V. Butina et al.

Summary: This study assessed the diversity of DNA viruses in the associated community of Baikal endemic sponge using metagenomics, revealing significant differences in terms of taxonomy and functional composition compared to Baikal water. The diversity shift in viral communities of diseased sponges reflects changes in microbial communities. Viruses in Baikal sponges regulate the associated community and contribute to the vitality, especially under unfavorable conditions. Similar viral genotypes were found in both marine and freshwater sponges.

MICROORGANISMS (2022)

Article Ecology

Highly diverse flavobacterial phages isolated from North Sea spring blooms

Nina Bartlau et al.

Summary: This study suggests that phages may modulate the succession of heterotrophic bacteria following phytoplankton blooms in spring. The diverse flavophages identified have the potential to affect their respective host populations in the North Sea microbial community, as stable components.

ISME JOURNAL (2022)

Article Environmental Sciences

Controlling the main source of green tides in the Yellow Sea through the method of biological competition

Meilin Fu et al.

Summary: Macroalgal blooms pose a serious threat to public health, fisheries, ecosystems, and global economies. The elimination of Ulva attached to aquaculture rafts can effectively prevent and control blooms. This study found that dried Neopyropia yezoensis and its culture filtrates and thalli have strong inhibitory effects on Ulva prolifera germination and attachment, suggesting their potential use to control green tides at the source.

MARINE POLLUTION BULLETIN (2022)

Article Multidisciplinary Sciences

Diversity and ecological footprint of Global Ocean RNA viruses

Guillermo Dominguez-Huerta et al.

Summary: This study reveals patterns and predictors of marine RNA virus diversity and identifies their ecological impacts on marine ecosystems. The research also highlights unexpectedly high polar ecological interactions.

SCIENCE (2022)

Article Microbiology

Variations in Marine Bacterial and Archaeal Communities during an Ulva prolifera Green Tide in Coastal Qingdao Areas

Guihua Zhao et al.

Summary: In this study, the bacterial and archaeal communities during an Ulva prolifera green tide in coastal Qingdao areas were analyzed using Illumina high-throughput sequencing. The diversity and structure of these communities, as well as the microbial co-occurrence network, were found to vary during the green tide. The decline phase was found to favor bacterial and archaeal diversity and richness. Significant differences were observed in the bacterial and archaeal communities between outbreak and decline phases. The microbial co-occurrence network was simpler and less connected during the outbreak phase. Flavobacteriales, Rhodobacterales, and Marine Group II (MGII) were identified as important organisms during the green tide. Temperature, chlorophyll a content, and salinity were found to have an important impact on the variations in bacterial and archaeal communities during the green tide.

MICROORGANISMS (2022)

Article Biochemical Research Methods

VPF-Class: taxonomic assignment and host prediction of uncultivated viruses based on viral protein families

Joan Carles Pons et al.

Summary: The study focused on utilizing Viral Protein Families (VPFs) for the taxonomic classification and host prediction of uncultured viruses, developing an automated tool VPF-Class for classification of viral contigs. VPF-Class demonstrated high accuracy in both viral contig classification and host prediction, showcasing its potential for use in large metagenomics datasets.

BIOINFORMATICS (2021)

Editorial Material Multidisciplinary Sciences

Revisiting marine lytic and lysogenic virus-host interactions: Kill-the-Winner and Piggyback-the-Winner

Xiaowei Chen et al.

SCIENCE BULLETIN (2021)

Article Environmental Sciences

The communities and functional profiles of virioplankton along a salinity gradient in a subtropical estuary

Chen Zhang et al.

Summary: The study found that in a subtropical estuary, viruses are mainly bacteriophages, and their community structure and function vary significantly along a salinity gradient, with carbohydrate-active enzymes being the main functional potential. Viruses have a negative effect on multiple host taxa. Salinity, ammonium, and dissolved oxygen are the dominant factors influencing the community composition of viruses.

SCIENCE OF THE TOTAL ENVIRONMENT (2021)

Article Plant Sciences

Assessing Herbivorous Impacts of Apohyale sp. on the Ulva prolifera Green Tide in China

Xiaoxiang Miao et al.

Summary: The epiphytic gammarid species, Apohyale sp., plays a significant role in controlling the floating algal biomass in the Yellow Sea Green Tide. The grazing behavior of Apohyale sp. affects the growth rate of algae, potentially leading to positive feedback on the floating algal biomass. Further research is needed to understand the population dynamics of these primary predators and their correlation with the expansion or decline of the Green Tide in the Yellow Sea.

FRONTIERS IN PLANT SCIENCE (2021)

Article Biotechnology & Applied Microbiology

Viral Characteristics of the Warm Atlantic and Cold Arctic Water Masses in the Nordic Seas

Chen Gao et al.

Summary: The Nordic Seas are experiencing abrupt climate change, connecting the Arctic Ocean and North Atlantic Ocean with complex water masses. The viromes in this region show distinct features in the cold Arctic waters and warm Atlantic waters, with Caudovirales and NCLDVs dominating in different conditions. This study provides important insights into the viral communities in response to climate change in the subarctic seas.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2021)

Review Biotechnology & Applied Microbiology

Implications of bacteriophages on the acquisition and spread of antibiotic resistance in the environment

Jose Luis Balcazar

INTERNATIONAL MICROBIOLOGY (2020)

Article Engineering, Environmental

Functional profiles of phycospheric microorganisms during a marine dinoflagellate bloom

Jin Zhou et al.

WATER RESEARCH (2020)

Review Biochemistry & Molecular Biology

Diversity of Viruses Infecting Eukaryotic Algae

Steven M. Short et al.

CURRENT ISSUES IN MOLECULAR BIOLOGY (2020)

Review Multidisciplinary Sciences

Ulva prolifera green-tide outbreaks and their environmental impact in the Yellow Sea, China

Yongyu Zhang et al.

NATIONAL SCIENCE REVIEW (2019)

Article Biochemistry & Molecular Biology

Marine DNA Viral Macro- and Microdiversity from Pole to Pole

Ann C. Gregory et al.

Article Microbiology

Elucidating Viral Communities During a Phytoplankton Bloom on the West Antarctic Peninsula

Tomas Alarcon-Schumacher et al.

FRONTIERS IN MICROBIOLOGY (2019)

Article Limnology

Tracing the settlement region of massive floating green algae in the Yellow Sea

Geng Huixia et al.

JOURNAL OF OCEANOLOGY AND LIMNOLOGY (2019)

Article Microbiology

First Viruses Infecting the Marine Diatom Guinardia delicatula

Laure Arsenieff et al.

FRONTIERS IN MICROBIOLOGY (2019)

Article Biotechnology & Applied Microbiology

Robust taxonomic classification of uncharted microbial sequences and bins with CAT and BAT

F. A. Bastiaan von Meijenfeldt et al.

GENOME BIOLOGY (2019)

Review Biochemistry & Molecular Biology

Insights into toxic Prymnesium parvum blooms: the role of sugars and algal viruses

Ben A. Wagstaff et al.

BIOCHEMICAL SOCIETY TRANSACTIONS (2018)

Review Biochemistry & Molecular Biology

The 'Neglected' Soil Virome - Potential Role and Impact

Akbar Adjie Pratama et al.

TRENDS IN MICROBIOLOGY (2018)

Article Biotechnology & Applied Microbiology

Microbial Community Dynamics and Assembly Follow Trajectories of an Early-Spring Diatom Bloom in a Semienclosed Bay

Huajun Zhang et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2018)

Article Multidisciplinary Sciences

Communication between viruses guides lysis-lysogeny decisions

Zohar Erez et al.

NATURE (2017)

Article Biochemical Research Methods

Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data

David Paez-Espino et al.

NATURE PROTOCOLS (2017)

Article Multidisciplinary Sciences

Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans

Felipe H. Coutinho et al.

NATURE COMMUNICATIONS (2017)

Article Multidisciplinary Sciences

Virus-host relationships of marine single-celled eukaryotes resolved from metatranscriptomics

Mohammad Moniruzzaman et al.

NATURE COMMUNICATIONS (2017)

Article Multidisciplinary Sciences

Unveiling the role and life strategies of viruses from the surface to the dark ocean

Elena Lara et al.

SCIENCE ADVANCES (2017)

Review Microbiology

Viral metabolic reprogramming in marine ecosystems

Bonnie L. Hurwitz et al.

CURRENT OPINION IN MICROBIOLOGY (2016)

Article Multidisciplinary Sciences

Lytic to temperate switching of viral communities

B. Knowles et al.

NATURE (2016)

Article Multidisciplinary Sciences

Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses

Simon Roux et al.

NATURE (2016)

Article Microbiology

Genomes of Abundant and Widespread Viruses from the Deep Ocean

Carolina Megumi Mizuno et al.

Article Multidisciplinary Sciences

Patterns and ecological drivers of ocean viral communities

Jennifer R. Brum et al.

SCIENCE (2015)

Article Multidisciplinary Sciences

Spatial and temporal changes in cumulative human impacts on the world's ocean

Benjamin S. Halpern et al.

NATURE COMMUNICATIONS (2015)

Article Multidisciplinary Sciences

VirSorter: mining viral signal from microbial genomic data

Simon Roux et al.

PEERJ (2015)

Article Biotechnology & Applied Microbiology

Discovery of Two Novel Viruses Expands the Diversity of Single-Stranded DNA and Single-Stranded RNA Viruses Infecting a Cosmopolitan Marine Diatom

Kei Kimura et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)

Article Microbiology

Top-down and bottom-up control on bacterial diversity in a western Norwegian deep-silled fjord

Julia E. Storesund et al.

FEMS MICROBIOLOGY ECOLOGY (2015)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Biodiversity Conservation

Macroalgal blooms alter community structure and primary productivity in marine ecosystems

Devin A. Lyons et al.

GLOBAL CHANGE BIOLOGY (2014)

Article Biochemical Research Methods

Metagenomic approaches for direct and cell culture evaluation of the virological quality of wastewater

Tiong Gim Aw et al.

JOURNAL OF VIROLOGICAL METHODS (2014)

Review Microbiology

Master recyclers: features and functions of bacteria associated with phytoplankton blooms

Alison Buchan et al.

NATURE REVIEWS MICROBIOLOGY (2014)

Review Microbiology

Environmental bacteriophages: viruses of microbes in aquatic ecosystems

Telesphore Sime-Ngando

FRONTIERS IN MICROBIOLOGY (2014)

Article Multidisciplinary Sciences

Metagenomic Exploration of Viruses throughout the Indian Ocean

Shannon J. Williamson et al.

PLOS ONE (2012)

Article Multidisciplinary Sciences

Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism

Luke R. Thompson et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Bacteria-Phage Antagonistic Coevolution in Soil

Pedro Gomez et al.

SCIENCE (2011)

Article Environmental Sciences

A simple and efficient method for concentration of ocean viruses by chemical flocculation

Seth G. John et al.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2011)

Review Microbiology

Anthropogenic perturbations in marine microbial communities

Balbina Nogales et al.

FEMS MICROBIOLOGY REVIEWS (2011)

Article Biochemical Research Methods

RNA-Seq gene expression estimation with read mapping uncertainty

Bo Li et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

Prodigal: prokaryotic gene recognition and translation initiation site identification

Doug Hyatt et al.

BMC BIOINFORMATICS (2010)

Article Marine & Freshwater Biology

Microbial availability and degradation of dissolved organic carbon and nitrogen in two coastal areas

Christian Lonborg et al.

ESTUARINE COASTAL AND SHELF SCIENCE (2009)

Article Biology

Dangerous nutrients: Evolution of phytoplankton resource uptake subject to virus attack

Duncan N. L. Menge et al.

JOURNAL OF THEORETICAL BIOLOGY (2009)

Article Environmental Sciences

World's largest macroalgal bloom caused by expansion of seaweed aquaculture in China

Dongyan Liu et al.

MARINE POLLUTION BULLETIN (2009)

Review Multidisciplinary Sciences

Viruses manipulate the marine environment

Forest Rohwer et al.

NATURE (2009)

Review Microbiology

Marine viruses - major players in the global ecosystem

Curtis A. Suttle

NATURE REVIEWS MICROBIOLOGY (2007)

Article Biochemistry & Molecular Biology

Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts

Matthew B. Sullivan et al.

PLOS BIOLOGY (2006)

Review Microbiology

Ecology of prokaryotic viruses

MG Weinbauer

FEMS MICROBIOLOGY REVIEWS (2004)

Article Plant Sciences

Novel morphology in Enteromorpha (Ulvophyceae) forming green tides

J Blomster et al.

AMERICAN JOURNAL OF BOTANY (2002)

Article Oceanography

Virus dynamics in a coccolithophore-dominated bloom in the North Sea

WH Wilson et al.

DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY (2002)

Review Microbiology

Virioplankton: Viruses in aquatic ecosystems

KE Wommack et al.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2000)