Related references
Note: Only part of the references are listed.Chromosome-scale genome assembly of an important medicinal plant honeysuckle
Hang Yu et al.
SCIENTIFIC DATA (2022)
High temperature enhances anthocyanin coloration in Asiatic hybrid lily flowers via upregulation of the MYB12 positive regulator
Masumi Yamagishi
HORTICULTURAL PLANT JOURNAL (2022)
DNA demethylation affects imprinted gene expression in maize endosperm
Qiang Xu et al.
GENOME BIOLOGY (2022)
Integrated analysis of DNA methylome and transcriptome reveals epigenetic regulation of CAM photosynthesis in pineapple
Yan Shi et al.
BMC PLANT BIOLOGY (2021)
Asymmetric epigenome maps of subgenomes reveal imbalanced transcription and distinct evolutionary trends in Brassica napus
Qing Zhang et al.
MOLECULAR PLANT (2021)
Integrated metabolic profiling and transcriptome analysis of pigment accumulation in Lonicera japonica flower petals during colour-transition
Yan Xia et al.
BMC PLANT BIOLOGY (2021)
The honeysuckle genome provides insight into the molecular mechanism of carotenoid metabolism underlying dynamic flower coloration
Xiangdong Pu et al.
NEW PHYTOLOGIST (2020)
Comparative transcriptomics analysis revealing flower trichome development during flower development in two Lonicera japonica Thunb. cultivars using RNA-seq
Jianjun Li et al.
BMC PLANT BIOLOGY (2020)
Regulation of Leaf Longevity by DML3-Mediated DNA Demethylation
Lu Yuan et al.
MOLECULAR PLANT (2020)
Advances in Genomic, Transcriptomic, and Metabolomic Analyses of Fruit Quality in Fruit Crops
Chunmei Zhang et al.
HORTICULTURAL PLANT JOURNAL (2020)
Carotenoid Pigment Accumulation in Horticultural Plants
Anna S. Hermanns et al.
HORTICULTURAL PLANT JOURNAL (2020)
DNA methylome analysis provides evidence that the expansion of the tea genome is linked to TE bursts
Lei Wang et al.
PLANT BIOTECHNOLOGY JOURNAL (2019)
Integrative omics of Lonicera japonica Thunb. Flower development unravels molecular changes regulating secondary metabolites
Bingxian Yang et al.
JOURNAL OF PROTEOMICS (2019)
Transcriptome-based analysis of carotenoid accumulation-related gene expression in petals of Chinese cabbage (Brassica rapa L.)
Ning Zhang et al.
3 BIOTECH (2019)
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
Daehwan Kim et al.
NATURE BIOTECHNOLOGY (2019)
Global increase in DNA methylation during orange fruit development and ripening
Huan Huang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Transcriptome assembly from long-read RNA-seq alignments with StringTie2
Sam Kovaka et al.
GENOME BIOLOGY (2019)
Dynamics and function of DNA methylation in plants
Huiming Zhang et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2018)
Comparative epigenomics reveals evolution of duplicated genes in potato and tomato
Lin Wang et al.
PLANT JOURNAL (2018)
GOATOOLS: A Python library for Gene Ontology analyses
D. V. Klopfenstein et al.
SCIENTIFIC REPORTS (2018)
Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes
Silong Sun et al.
NATURE GENETICS (2018)
Carotenoid Accumulation and Its Contribution to Flower Coloration of Osmanthus fragrans
Yiguang Wang et al.
FRONTIERS IN PLANT SCIENCE (2018)
ViewBS: a powerful toolkit for visualization of high-throughput bisulfite sequencing data
Xiaosan Huang et al.
BIOINFORMATICS (2018)
Downregulation of RdDM during strawberry fruit ripening
Jingfei Cheng et al.
GENOME BIOLOGY (2018)
De novo transcriptome assembly and characterization of nine tissues of Lonicera japonica to identify potential candidate genes involved in chlorogenic acid, luteolosides, and secoiridoid biosynthesis pathways
Amit Rai et al.
JOURNAL OF NATURAL MEDICINES (2017)
Critical roles of DNA demethylation in the activation of ripening-induced genes and inhibition of ripening-repressed genes in tomato fruit
Zhaobo Lang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Analysis of Chromatin Regulators Reveals Specific Features of Rice DNA Methylation Pathways
Feng Tan et al.
PLANT PHYSIOLOGY (2016)
DNA demethylation is initiated in the central cells of Arabidopsis and rice
Kyunghyuk Park et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
A One Precursor One siRNA Model for Pol IV-Dependent siRNA Biogenesis
Jixian Zhai et al.
CELL (2015)
Disruption of a CAROTENOID CLEAVAGE DIOXYGENASE 4 gene converts flower colour from white to yellow in Brassica species
Bao Zhang et al.
NEW PHYTOLOGIST (2015)
Methylome analysis reveals an important role for epigenetic changes in the regulation of the Arabidopsis response to phosphate starvation
Lenin Yong-Villalobos et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
CG gene body DNA methylation changes and evolution of duplicated genes in cassava
Haifeng Wang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Whole-genome DNA methylation patterns and complex associations with gene structure and expression during flower development in Arabidopsis
Hongxing Yang et al.
PLANT JOURNAL (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
RNA-directed DNA methylation: an epigenetic pathway of increasing complexity
Marjori A. Matzke et al.
NATURE REVIEWS GENETICS (2014)
Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis
Hume Stroud et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening
Silin Zhong et al.
NATURE BIOTECHNOLOGY (2013)
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
Yupeng Wang et al.
NUCLEIC ACIDS RESEARCH (2012)
'Leveling' the playing field for analyses of single-base resolution DNA methylomes
Matthew D. Schultz et al.
TRENDS IN GENETICS (2012)
methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles
Altuna Akalin et al.
GENOME BIOLOGY (2012)
Molecular control of microsporogenesis in Arabidopsis
Fang Chang et al.
CURRENT OPINION IN PLANT BIOLOGY (2011)
Signaling and Transcriptional Control of Reproductive Development in Arabidopsis
Xiaochun Ge et al.
CURRENT BIOLOGY (2010)
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
Julie A. Law et al.
NATURE REVIEWS GENETICS (2010)
Differential expression of carotenoid-related genes determines diversified carotenoid coloration in floral tissues of Oncidium cultivars
Chung-Yi Chiou et al.
PLANTA (2010)
Active DNA Demethylation Mediated by DNA Glycosylases
Jian-Kang Zhu
ANNUAL REVIEW OF GENETICS (2009)
BSMAP: whole genome bisulfite sequence MAPping program
Yuanxin Li et al.
BMC BIOINFORMATICS (2009)
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
Shawn J. Cokus et al.
NATURE (2008)
The DNA glycosylase/lyase ROS1 functions in pruning DNA methylation patterns in Arabidopsis
Jianhua Zhu et al.
CURRENT BIOLOGY (2007)
Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis
Xiaoyu Zhang et al.
CELL (2006)
The genetics and biochemistry of floral pigments
Erich Grotewold
ANNUAL REVIEW OF PLANT BIOLOGY (2006)