4.7 Article

Fast and Robust Single Particle Reconstruction in 3D Fluorescence Microscopy

Related references

Note: Only part of the references are listed.
Review Biophysics

Super-Resolution Microscopy for Structural Cell Biology

Sheng Liu et al.

Summary: This review introduces super-resolution microscopy techniques, focusing on SMLM and MINFLUX, and summarizes recent technical developments. It also outlines key experimental conditions and analysis methods, highlighting the application of SMLM in studying the structures of biologically relevant molecular machines.

ANNUAL REVIEW OF BIOPHYSICS (2022)

Review Biochemistry & Molecular Biology

Mapping molecular complexes with super-resolution microscopy and single-particle analysis

Afonso Mendes et al.

Summary: Understanding the structure of supramolecular complexes is important for studying their function and disease modulation. Super-resolution microscopy combined with single-particle analysis overcomes technical limitations and provides detailed structural information, broadening our knowledge.

OPEN BIOLOGY (2022)

Article Biochemistry & Molecular Biology

Overview of the centriole architecture

Maeva LeGuennec et al.

Summary: The centriole, a complex molecular assembly in eukaryotic cells, remains unsolved in terms of its atomic structure. However, advancements in electron microscopy, cryo-tomography, and super-resolution studies have allowed for a better understanding of its global architecture. This review highlights the current knowledge on the organization of centrioles, including substructural elements and differences between species, with a focus on the limitations hindering a complete atomic view of their architecture.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2021)

Article Multidisciplinary Sciences

3D particle averaging and detection of macromolecular symmetry in localization microscopy

Hamidreza Heydarian et al.

Summary: The authors introduce a method that significantly enhances signal-to-noise ratio and resolution of 3D single particle analysis in localization microscopy, enabling determination of the symmetry groups of macromolecular complexes.

NATURE COMMUNICATIONS (2021)

Article Mathematical & Computational Biology

3D Structure From 2D Microscopy Images Using Deep Learning

Benjamin Blundell et al.

Summary: This study introduces a deep learning solution for reconstructing protein complex structures from 2D microscopy images, utilizing a combination of convolutional neural network and differentiable renderer to predict and derive a structure model that fits the dataset.

FRONTIERS IN BIOINFORMATICS (2021)

Article Biochemical Research Methods

Homogeneous multifocal excitation for high-throughput super-resolution imaging

Dora Mahecic et al.

NATURE METHODS (2020)

Article Multidisciplinary Sciences

Deformed alignment of super-resolution images for semi-flexible structures

Xiaoyu Shi et al.

PLOS ONE (2019)

Article Multidisciplinary Sciences

Reconstitution and structure of a plant NLR resistosome conferring immunity

Jizong Wang et al.

SCIENCE (2019)

Review Engineering, Electrical & Electronic

Image Registration With Fourier-Based Image Correlation: A Comprehensive Review of Developments and Applications

Xiaohua Tong et al.

IEEE JOURNAL OF SELECTED TOPICS IN APPLIED EARTH OBSERVATIONS AND REMOTE SENSING (2019)

Article Biochemistry & Molecular Biology

Cryo-EM of multiple cage architectures reveals a universal mode of clathrin self-assembly

Kyle L. Morris et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2019)

Review Cell Biology

Super-resolution microscopy demystified

Lothar Schermelleh et al.

NATURE CELL BIOLOGY (2019)

Article Biochemical Research Methods

Imaging cellular ultrastructures using expansion microscopy (U-ExM)

Davide Gambarotto et al.

NATURE METHODS (2019)

Article Computer Science, Interdisciplinary Applications

Reconstruction From Multiple Particles for 3D Isotropic Resolution in Fluorescence Microscopy

Denis Fortun et al.

IEEE TRANSACTIONS ON MEDICAL IMAGING (2018)

Article Biochemical Research Methods

Multicolor single-particle reconstruction of protein complexes

Christian Sieben et al.

NATURE METHODS (2018)

Article Computer Science, Artificial Intelligence

Building Proteins in a Day: Efficient 3D Molecular Structure Estimation with Electron Cryomicroscopy

Ali Punjani et al.

IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE (2017)

Article Multidisciplinary Sciences

Angular reconstitution-based 3D reconstructions of nanomolecular structures from superresolution light-microscopy images

Desiree Salas et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Biochemistry & Molecular Biology

Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy

J. M. de la Rosa-Trevin et al.

JOURNAL OF STRUCTURAL BIOLOGY (2016)

Review Biochemistry & Molecular Biology

Three-dimensional reconstruction methods in Single Particle Analysis from transmission electron microscopy data

J. M. Carazo et al.

ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS (2015)

Article Biochemistry & Molecular Biology

Conical Fourier shell correlation applied to electron tomograms

C. A. Diebolder et al.

JOURNAL OF STRUCTURAL BIOLOGY (2015)

Article Multidisciplinary Sciences

Expansion microscopy

Fei Chen et al.

SCIENCE (2015)

Article Chemistry, Analytical

Resolution improvement by 3D particle averaging in localization microscopy

Jordi Broeken et al.

METHODS AND APPLICATIONS IN FLUORESCENCE (2015)

Article Biochemical Research Methods

Efficient initial volume determination from electron microscopy images of single particles

Javier Vargas et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

Efficient Bayesian-based multiview deconvolution

Stephan Preibisch et al.

NATURE METHODS (2014)

Article Multidisciplinary Sciences

Fast high-resolution 3D total internal reflection fluorescence microscopy by incidence angle scanning and azimuthal averaging

Jerome Boulanger et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Computer Science, Artificial Intelligence

Multiview Deblurring for 3-D Images from Light-Sheet-Based Fluorescence Microscopy

Maja Temerinac-Ott et al.

IEEE TRANSACTIONS ON IMAGE PROCESSING (2012)

Review Cell Biology

A guide to super-resolution fluorescence microscopy

Lothar Schermelleh et al.

JOURNAL OF CELL BIOLOGY (2010)

Review Statistics & Probability

Importance sampling: a review

Surya T. Tokdar et al.

WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL STATISTICS (2010)

Article Biochemistry & Molecular Biology

Fourier shell correlation threshold criteria

M van Heel et al.

JOURNAL OF STRUCTURAL BIOLOGY (2005)

Article Computer Science, Artificial Intelligence

Image quality assessment: From error visibility to structural similarity

Z Wang et al.

IEEE TRANSACTIONS ON IMAGE PROCESSING (2004)