Related references
Note: Only part of the references are listed.Megasphaera elsdenii Lactate Degradation Pattern Shifts in Rumen Acidosis Models
Lianmin Chen et al.
FRONTIERS IN MICROBIOLOGY (2019)
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
Dongwan D. Kang et al.
PEERJ (2019)
Practical feeding management recommendations to mitigate the risk of subacute ruminal acidosis in dairy cattle
E. Humer et al.
JOURNAL OF DAIRY SCIENCE (2018)
Review: Enhancing gastrointestinal health in dairy cows
J. C. Plaizier et al.
ANIMAL (2018)
Assessment of Rumen Microbiota from a Large Dairy Cattle Cohort Reveals the Pan and Core Bacteriomes Contributing to Varied Phenotypes
Mingyuan Xue et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2018)
dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
Matthew R. Olm et al.
ISME JOURNAL (2017)
Metatranscriptomic Profiling Reveals Linkages between the Active Rumen Microbiome and Feed Efficiency in Beef Cattle
Fuyong Li et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2017)
Stress Physiology of Lactic Acid Bacteria
Konstantinos Papadimitriou et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2016)
Fast and sensitive taxonomic classification for metagenomics with Kaiju
Peter Menzel et al.
NATURE COMMUNICATIONS (2016)
Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range (vol 5, 14567, 2015)
Gemma Henderson et al.
SCIENTIFIC REPORTS (2016)
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Dinghua Li et al.
BIOINFORMATICS (2015)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
Effect of dietary energy source and level on nutrient digestibility, rumen microbial protein synthesis, and milk performance in lactating dairy cows
X. Q. Zhou et al.
JOURNAL OF DAIRY SCIENCE (2015)
HTSeq-a Python framework to work with high-throughput sequencing data
Simon Anders et al.
BIOINFORMATICS (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Parallel labeling experiments validate Clostridium acetobutylicum metabolic network model for 13C metabolic flux analysis
Jennifer Au et al.
METABOLIC ENGINEERING (2014)
Porphyromonas gingivalis and Treponema denticola Exhibit Metabolic Symbioses
Kheng H. Tan et al.
PLOS PATHOGENS (2014)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
NAD-dependent lactate dehydrogenase catalyses the first step in respiratory utilization of lactate by Lactococcus lactis
Rui Zhao et al.
FEBS OPEN BIO (2013)
Crystal Structures of Acetobacter aceti Succinyl-Coenzyme A (CoA):Acetate CoA-Transferase Reveal Specificity Determinants and Illustrate the Mechanism Used by Class I CoA-Transferases
Elwood A. Mullins et al.
BIOCHEMISTRY (2012)
CD-HIT: accelerated for clustering the next-generation sequencing data
Limin Fu et al.
BIOINFORMATICS (2012)
SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
Evguenia Kopylova et al.
BIOINFORMATICS (2012)
An energy-rich diet enhances expression of Na+/H+ exchanger isoform 1 and 3 messenger RNA in rumen epithelium of goat
W. Yang et al.
JOURNAL OF ANIMAL SCIENCE (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Composition and Similarity of Bovine Rumen Microbiota across Individual Animals
Elie Jami et al.
PLOS ONE (2012)
Impact of subacute ruminal acidosis (SARA) adaptation and recovery on the density and diversity of bacteria in the rumen of dairy cows
Sarah E. Hook et al.
FEMS MICROBIOLOGY ECOLOGY (2011)
RUMINANT NUTRITION SYMPOSIUM: Role of fermentation acid absorption in the regulation of ruminal pH
J. R. Aschenbach et al.
JOURNAL OF ANIMAL SCIENCE (2011)
Rumen Microbial Population Dynamics during Adaptation to a High-Grain Diet
S. C. Fernando et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)
Quinone-dependent D-lactate dehydrogenase Dld (Cg1027) is essential for growth of Corynebacterium glutamicum on D-lactate
Osamu Kato et al.
BMC MICROBIOLOGY (2010)
FragGeneScan: predicting genes in short and error-prone reads
Mina Rho et al.
NUCLEIC ACIDS RESEARCH (2010)
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
Stephane Guindon et al.
SYSTEMATIC BIOLOGY (2010)
Genomic reconstruction of Shewanella oneidensis MR-1 metabolism reveals a previously uncharacterized machinery for lactate utilization
Grigory E. Pinchuk et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Advances in microbial ecosystem concepts and their consequences for ruminant agriculture
J. E. Edwards et al.
ANIMAL (2008)
The characterization of lactic acid producing bacteria from the rumen of dairy cattle grazing on improved pasture supplemented with wheat and barley grain
J. D. Hernandez et al.
JOURNAL OF APPLIED MICROBIOLOGY (2008)
A specialized citric acid cycle requiring succinyl-coenzyme a (CoA):: Acetate CoA-transferase (AarC) confers acetic acid resistance on the acidophile Acetobacter acet
Elwood A. Mullins et al.
JOURNAL OF BACTERIOLOGY (2008)
Subacute ruminal acidosis in dairy cows: The physiological causes, incidence and consequences
J. C. Plaizier et al.
VETERINARY JOURNAL (2008)
KAAS: an automatic genome annotation and pathway reconstruction server
Yuki Moriya et al.
NUCLEIC ACIDS RESEARCH (2007)
Ruminal acidosis in beef cattle: The current microbiological and nutritional outlook
T. G. Nagaraja et al.
JOURNAL OF DAIRY SCIENCE (2007)
Modulation of electroneutral Na transport in sheep rumen epithelium by luminal ammonia
K Abdoun et al.
AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY (2005)
The effect of basal diet on lactate-producing bacteria and the susceptibility of sheep to lactic acidosis
RAM Al Jassim et al.
ANIMAL SCIENCE (2003)
Dynamic response of catabolic pathways to autoacidification in Lactococcus lactis:: transcript profiling and stability in relation to metabolic and energetic constraints
S Even et al.
MOLECULAR MICROBIOLOGY (2002)
Share Paper
