4.7 Article

Cellular responses to HSV-1 infection are linked to specific types of alterations in the host transcriptome

Related references

Note: Only part of the references are listed.
Article Multidisciplinary Sciences

Widespread disruption of host transcription termination in HSV-1 infection

Andrzej J. Rutkowski et al.

NATURE COMMUNICATIONS (2015)

Article Biochemistry & Molecular Biology

p32 Is a Novel Target for Viral Protein ICP34.5 of Herpes Simplex Virus Type 1 and Facilitates Viral Nuclear Egress

Yu Wang et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2014)

Review Microbiology

An Inquiry into the Molecular Basis of HSV Latency and Reactivation

Bernard Roizman et al.

ANNUAL REVIEW OF MICROBIOLOGY, VOL 67 (2013)

Article Biochemistry & Molecular Biology

Molecular cloning and characterization of a novel isoform of the non-canonical poly(A) polymerase PAPD7

Koichi Ogami et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2013)

Article Neurosciences

DNA damage promotes herpes simplex virus-1 protein expression in a neuroblastoma cell line

Ketna Volcy et al.

JOURNAL OF NEUROVIROLOGY (2013)

Article Virology

Activation of Human Herpesvirus Replication by Apoptosis

Alka Prasad et al.

JOURNAL OF VIROLOGY (2013)

Article Biotechnology & Applied Microbiology

Differential analysis of gene regulation at transcript resolution with RNA-seq

Cole Trapnell et al.

NATURE BIOTECHNOLOGY (2013)

Article Microbiology

The Spatial Organization of DNA Virus Genomes in the Nucleus

Roger D. Everett

PLOS PATHOGENS (2013)

Article Biochemistry & Molecular Biology

The mRNA-Bound Proteome and Its Global Occupancy Profile on Protein-Coding Transcripts

Alexander G. Baltz et al.

MOLECULAR CELL (2012)

Article Biochemical Research Methods

Identification of novel transcripts in annotated genomes using RNA-Seq

Adam Roberts et al.

BIOINFORMATICS (2011)

Review Biochemistry & Molecular Biology

Mechanisms and Consequences of Alternative Polyadenylation

Dafne Campigli Di Giammartino et al.

MOLECULAR CELL (2011)

Article Multidisciplinary Sciences

CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing

Sanjeev Shukla et al.

NATURE (2011)

Article Multidisciplinary Sciences

US3 protein kinase of HSV-1 cycles between the cytoplasm and nucleus and interacts with programmed cell death protein 4 (PDCD4) to block apoptosis

Xiaojia Wang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Biotechnology & Applied Microbiology

Improving RNA-Seq expression estimates by correcting for fragment bias

Adam Roberts et al.

GENOME BIOLOGY (2011)

Article Biochemistry & Molecular Biology

A viral E3 ligase targets RNF8 and RNF168 to control histone ubiquitination and DNA damage responses

Caroline E. Lilley et al.

EMBO JOURNAL (2010)

Article Biochemical Research Methods

Analysis and design of RNA sequencing experiments for identifying isoform regulation

Yarden Katz et al.

NATURE METHODS (2010)

Article Biochemical Research Methods

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell et al.

BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

Docking Motif-Guided Mapping of the Interactome of Protein Phosphatase-1

Annick Hendrickx et al.

CHEMISTRY & BIOLOGY (2009)

Article Biochemical Research Methods

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

Da Wei Huang et al.

NATURE PROTOCOLS (2009)

Article Biochemistry & Molecular Biology

Herpesvirus protein ICP27 switches PML isoform by altering mRNA splicing

Takayuki Nojima et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biotechnology & Applied Microbiology

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead et al.

GENOME BIOLOGY (2009)

Review Medicine, Research & Experimental

Herpes simplex: Insights on pathogenesis and possible vaccines

David M. Koelle et al.

ANNUAL REVIEW OF MEDICINE (2008)

Article Virology

Epstein-Barr virus SM protein functions as an alternative splicing factor

Dinesh Verma et al.

JOURNAL OF VIROLOGY (2008)

Article Biochemistry & Molecular Biology

The double bromodomain proteins Brd2 and Brd3 couple histone acetylation to transcription

Gary LeRoy et al.

MOLECULAR CELL (2008)

Article Biochemistry & Molecular Biology

Nonself RNA-sensing mechanism of RIG-I helicase and activation of antiviral immune responses

Kiyohiro Takahasi et al.

MOLECULAR CELL (2008)

Article Multidisciplinary Sciences

Alternative isoform regulation in human tissue transcriptomes

Eric T. Wang et al.

NATURE (2008)

Article Biochemistry & Molecular Biology

Isolation of XAB2 complex involved in pre-mRNA splicing, transcription, and transcription-coupled repair

Isao Kuraoka et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2008)

Article Biochemistry & Molecular Biology

Regulation of p73-mediated apoptosis by c-Jun N-terminal kinase

Emma V. Jones et al.

BIOCHEMICAL JOURNAL (2007)

Article Multidisciplinary Sciences

Foxp3 controls regulatory T-cell function by interacting with AML1/Runx1

Masahiro Ono et al.

NATURE (2007)

Article Biochemistry & Molecular Biology

Evidence that poly(A) binding protein C1 binds nuclear pre-mRNA poly(A) tails

N Hosoda et al.

MOLECULAR AND CELLULAR BIOLOGY (2006)

Article Multidisciplinary Sciences

The UL41 protein of herpes simplex virus 1 degrades RNA by endonucleolytic cleavage in absence of other cellular or viral proteins

B Taddeo et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Review Biotechnology & Applied Microbiology

The AP-2 family of transcription factors

Dawid Eckert et al.

GENOME BIOLOGY (2005)

Article Biochemistry & Molecular Biology

A large-scale analysis of mRNA polyadenylation of human and mouse genes

B Tian et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

MK2-induced tristetraprolin: 14-3-3 complexes prevent stress granule association and ARE-mRNA decay

G Stoecklin et al.

EMBO JOURNAL (2004)

Article Multidisciplinary Sciences

The herpes simplex virus 1 UL41 gene-dependent destabilization of cellular RNAs is selective and may be sequence-specific

A Esclatine et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Multidisciplinary Sciences

The UL41 protein of herpes simplex virus mediates selective stabilization or degradation of cellular mRNAs

A Esclatine et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biochemistry & Molecular Biology

Systematic identification of novel protein domain families associated with nuclear functions

T Doerks et al.

GENOME RESEARCH (2002)

Review Immunology

Modulation of apoptosis during herpes simplex virus infection in human cells

M Aubert et al.

MICROBES AND INFECTION (2001)

Review Medicine, General & Internal

Herpes simplex virus infections

RJ Whitley et al.

LANCET (2001)

Article Multidisciplinary Sciences

Pol κ:: A DNA polymerase required for sister chromatid cohesion

ZH Wang et al.

SCIENCE (2000)

Article Biochemistry & Molecular Biology

UV-induced stabilization of c-fos and other short-lived mRNAs

C Blattner et al.

MOLECULAR AND CELLULAR BIOLOGY (2000)