4.7 Article

Multi-marker metabarcoding of coral skeletons reveals a rich microbiome and diverse evolutionary origins of endolithic algae

Related references

Note: Only part of the references are listed.
Article Environmental Sciences

The three steps of the carbonate biogenic dissolution process by microborers in coral reefs (New Caledonia)

J. S. Grange et al.

ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH (2015)

Review Biochemistry & Molecular Biology

Coral-the world's most diverse symbiotic ecosystem

Linda L. Blackall et al.

MOLECULAR ECOLOGY (2015)

Article Biochemistry & Molecular Biology

Tag jumps illuminated - reducing sequence-to-sample misidentifications in metabarcoding studies

Ida Baerholm Schnell et al.

MOLECULAR ECOLOGY RESOURCES (2015)

Article Ecology

Microbiota of the Major South Atlantic Reef Building Coral Mussismilia

Samodha C. Fernando et al.

MICROBIAL ECOLOGY (2015)

Editorial Material Biology

The Earth Microbiome project: successes and aspirations

Jack A. Gilbert et al.

BMC BIOLOGY (2014)

Article Biodiversity Conservation

Ocean acidification and warming scenarios increase microbioerosion of coral skeletons

Catalina Reyes-Nivia et al.

GLOBAL CHANGE BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture

Nadin Rohland et al.

GENOME RESEARCH (2012)

Article Biochemistry & Molecular Biology

Towards next-generation biodiversity assessment using DNA metabarcoding

Pierre Taberlet et al.

MOLECULAR ECOLOGY (2012)

Article Ecology

phytools: an R package for phylogenetic comparative biology (and other things)

Liam J. Revell

METHODS IN ECOLOGY AND EVOLUTION (2012)

Article Biochemical Research Methods

Quality control and preprocessing of metagenomic datasets

Robert Schmieder et al.

BIOINFORMATICS (2011)

Article Biochemical Research Methods

FLASH: fast length adjustment of short reads to improve genome assemblies

Tanja Magoc et al.

BIOINFORMATICS (2011)

Article Marine & Freshwater Biology

Genotypic diversity and distribution of Ostreobium quekettii within scleractinian corals

Eldad Gutner-Hoch et al.

CORAL REEFS (2011)

Editorial Material Biochemistry & Molecular Biology

Boring algae

Heroen Verbruggen et al.

CURRENT BIOLOGY (2011)

Article Ecology

Endolithic chlorophyll d-containing phototrophs

Lars Behrendt et al.

ISME JOURNAL (2011)

Article Biochemical Research Methods

PyNAST: a flexible tool for aligning sequences to a template alignment

J. Gregory Caporaso et al.

BIOINFORMATICS (2010)

Letter Biochemical Research Methods

QIIME allows analysis of high-throughput community sequencing data

J. Gregory Caporaso et al.

NATURE METHODS (2010)

Article Biochemical Research Methods

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

Nicolas Lartillot et al.

BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

Evaluating high-throughput sequencing as a method for metagenomic analysis of nematode diversity

Dorota L. Porazinska et al.

MOLECULAR ECOLOGY RESOURCES (2009)

Article Biochemistry & Molecular Biology

A multi-locus time-calibrated phylogeny of the siphonous green algae

Heroen Verbruggen et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2009)

Article Biotechnology & Applied Microbiology

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

Qiong Wang et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)

Article Multidisciplinary Sciences

Dissecting biological dark matter with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth

Yann Marcy et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Review Microbiology

The role of microorganisms in coral health, disease and evolution

Eugene Rosenberg et al.

NATURE REVIEWS MICROBIOLOGY (2007)

Article Biochemical Research Methods

RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Alexandros Stamatakis

BIOINFORMATICS (2006)

Article Biology

The role of zooxanthellae in the thermal tolerance of corals: a 'nugget of hope' for coral reefs in an era of climate change

Ray Berkelmans et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2006)

Article Plant Sciences

Identification of conserved regions in the plastid genome: implications for DNA barcoding and biological function

Gernot G. Presting

CANADIAN JOURNAL OF BOTANY-REVUE CANADIENNE DE BOTANIQUE (2006)

Article Biotechnology & Applied Microbiology

PCR-induced sequence artifacts and bias: Insights from comparison of two 16S rRNA clone libraries constructed from the same sample

SG Acinas et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)

Review Geosciences, Multidisciplinary

The evolution of modern corals and their early history

GD Stanley

EARTH-SCIENCE REVIEWS (2003)

Review Microbiology

The uncultured microbial majority

MS Rappe et al.

ANNUAL REVIEW OF MICROBIOLOGY (2003)

Article Biochemistry & Molecular Biology

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

K Katoh et al.

NUCLEIC ACIDS RESEARCH (2002)

Article Biology

Endolithic algae: an alternative source of photoassimilates during coral bleaching

M Fine et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2002)

Article Multidisciplinary Sciences

The challenge of Siphonous Green Algae

PS Vroom et al.

AMERICAN SCIENTIST (2001)