Related references
Note: Only part of the references are listed.DNA methylation changes induced by long and short photoperiods in Nasonia
Mirko Pegoraro et al.
GENOME RESEARCH (2016)
Identification of methylated deoxyadenosines in vertebrates reveals diversity in DNA modifications
Magdalena J. Koziol et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)
Identification of methylated deoxyadenosines in vertebrates reveals diversity in DNA modifications
Magdalena J. Koziol et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)
DNA methylation of cord blood cell types: Applications for mixed cell birth studies
Kelly M. Bakulski et al.
EPIGENETICS (2016)
DNA methylation on N6-adenine in mammalian embryonic stem cellse
Tao P. Wu et al.
NATURE (2016)
Validation of a DNA methylation microarray for 850,000 CpG sites of the human genome enriched in enhancer sequences
Sebastian Moran et al.
EPIGENOMICS (2016)
methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data
Kamal Kishore et al.
BMC BIOINFORMATICS (2015)
BSPAT: a fast online tool for DNA methylation co-occurrence pattern analysis based on high-throughput bisulfite sequencing data
Ke Hu et al.
BMC BIOINFORMATICS (2015)
MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data
Wen-Wei Liao et al.
BMC GENOMICS (2015)
Genome-wide analysis of DNA methylation in subjects with type 1 diabetes identifies epigenetic modifications associated with proliferative diabetic retinopathy
Elisabet Agardh et al.
BMC MEDICINE (2015)
DNA Methylation on N6-Adenine in C-elegans
Eric Lieberman Greer et al.
CELL (2015)
N6-Methyladenine DNA Modification in Drosophila
Guoqiang Zhang et al.
CELL (2015)
N6-Methyldeoxyadenosine Marks Active Transcription Start Sites in Chlamydomonas
Ye Fu et al.
CELL (2015)
DNA Demethylation Dynamics in the Human Prenatal Germline
Sofia Gkountela et al.
CELL (2015)
Epigenome-Wide Association of Liver Methylation Patterns and Complex Metabolic Traits in Mice
Luz D. Orozco et al.
CELL METABOLISM (2015)
DNA methylation and application in forensic sciences
Farzeen Kader et al.
FORENSIC SCIENCE INTERNATIONAL (2015)
Combining MeDIP-seq and MRE-seq to investigate genome-wide CpG methylation
Daofeng Li et al.
METHODS (2015)
Genome-wide signature of local adaptation linked to variable CpG methylation in oak populations
Alexander Platt et al.
MOLECULAR ECOLOGY (2015)
MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing
Mark A. Urich et al.
NATURE PROTOCOLS (2015)
Profiling DNA methylome landscapes of mammalian cells with single-cell reduced-representation bisulfite sequencing
Hongshan Guo et al.
NATURE PROTOCOLS (2015)
Single-cell epigenomics: techniques and emerging applications
Omer Schwartzman et al.
NATURE REVIEWS GENETICS (2015)
Charting oxidized methylcytosines at base resolution
Hao Wu et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)
Reading the unique DNA methylation landscape of the brain: Non-CpG methylation, hydroxymethylation, and MeCP2
Benyam Kinde et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Base resolution methylome profiling: considerations in platform selection, data preprocessing and analysis
Zhifu Sun et al.
EPIGENOMICS (2015)
Charting oxidized methylcytosines at base resolution
Hao Wu et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)
A preliminary exploration on DNA methylation of transgene across generations in transgenic rats
Qiling Li et al.
Scientific Reports (2015)
Single-Cell DNA Methylome Sequencing and Bioinformatic Inference of Epigenomic Cell-State Dynamics
Matthias Farlik et al.
CELL REPORTS (2015)
Whole-genome bisulfite sequencing of cell-free DNA identifies signature associated with metastatic breast cancer
Christophe Legendre et al.
CLINICAL EPIGENETICS (2015)
5-hydroxymethylcytosine marks promoters in colon that resist DNA hypermethylation in cancer
Santiago Uribe-Lewis et al.
GENOME BIOLOGY (2015)
SMAP: a streamlined methylation analysis pipeline for bisulfite sequencing
Shengjie Gao et al.
GIGASCIENCE (2015)
PacBio Sequencing and Its Applications
Anthony Rhoads et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2015)
Genome-Wide Epigenetic Regulation of Gene Transcription in Maize Seeds
Xiaoduo Lu et al.
PLOS ONE (2015)
MethylSig: a whole genome DNA methylation analysis pipeline
Yongseok Park et al.
BIOINFORMATICS (2014)
Accessing epigenetic variation in the plant methylome
Kyung Do Kim et al.
BRIEFINGS IN FUNCTIONAL GENOMICS (2014)
Methylated DNA Immunoprecipitation and High-Throughput Sequencing (MeDIP-seq) Using Low Amounts of Genomic DNA
Ming-Tao Zhao et al.
CELLULAR REPROGRAMMING (2014)
Application of a low cost array-based technique - TAB-Array - for quantifying and mapping both 5mC and 5hmC at single base resolution in human pluripotent stem cells
Kristopher L. Nazor et al.
GENOMICS (2014)
The DNA Methyltransferase Dnmt1 Directly Interacts with the SET and RING Finger-associated (SRA) Domain of the Multifunctional Protein Uhrf1 to Facilitate Accession of the Catalytic Center to Hemi-methylated DNA
Ahmet Can Berkyurek et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2014)
5-Hydroxymethylcytosine is a predominantly stable DNA modification
Martin Bachman et al.
NATURE CHEMISTRY (2014)
Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity
Sebastien A. Smallwood et al.
NATURE METHODS (2014)
Advances in the profiling of DNA modifications: cytosine methylation and beyond
Nongluk Plongthongkum et al.
NATURE REVIEWS GENETICS (2014)
WBSA: Web Service for Bisulfite Sequencing Data Analysis
Fang Liang et al.
PLOS ONE (2014)
Mining cancer methylomes: prospects and challenges
Clare Stirzaker et al.
TRENDS IN GENETICS (2014)
Statistical methods for detecting differentially methylated loci and regions
Mark D. Robinson et al.
FRONTIERS IN GENETICS (2014)
Methylation plotter: a web tool for dynamic visualization of DNAmethylation data
Izaskun Mallona et al.
SOURCE CODE FOR BIOLOGY AND MEDICINE (2014)
Non-exhaustive DNA methylation-mediated transposon silencing in the black truffle genome, a complex fungal genome with massive repeat element content
Barbara Montanini et al.
GENOME BIOLOGY (2014)
Detection of significantly differentially methylated regions in targeted bisulfite sequencing data
Katja Hebestreit et al.
BIOINFORMATICS (2013)
BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data
Weilong Guo et al.
BMC GENOMICS (2013)
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
Helga Thorvaldsdottir et al.
BRIEFINGS IN BIOINFORMATICS (2013)
Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition
Alika K. Maunakea et al.
CELL RESEARCH (2013)
Genome-wide DNA methylation assay reveals novel candidate biomarker genes in cervical cancer
Sanja A. Farkas et al.
EPIGENETICS (2013)
Mapping the zebrafish brain methylome using reduced representation bisulfite sequencing
Aniruddha Chatterjee et al.
EPIGENETICS (2013)
CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize
Jonathan I. Gent et al.
GENOME RESEARCH (2013)
The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA
Michael Regulski et al.
GENOME RESEARCH (2013)
Patterns of population epigenomic diversity
Robert J. Schmitz et al.
NATURE (2013)
Oxidative bisulfite sequencing of 5-methylcytosine and 5-hydroxymethylcytosine
Michael J. Booth et al.
NATURE PROTOCOLS (2013)
DNA methylation: roles in mammalian development
Zachary D. Smith et al.
NATURE REVIEWS GENETICS (2013)
GBSA: a comprehensive software for analysing whole genome bisulfite sequencing data
Touati Benoukraf et al.
NUCLEIC ACIDS RESEARCH (2013)
Comparison of Methods for Quantification of Global DNA Methylation in Human Cells and Tissues
Sofia Lisanti et al.
PLOS ONE (2013)
DNA methylation dynamics during the mammalian life cycle
Jamie A. Hackett et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2013)
Detection and mapping of 5-methylcytosine and 5-hydroxymethylcytosine with nanopore MspA
Andrew H. Laszlo et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
BRAT-BW: efficient and accurate mapping of bisulfite-treated reads
Elena Y. Harris et al.
BIOINFORMATICS (2012)
SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing
Zhifu Sun et al.
BIOINFORMATICS (2012)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
Mapping recently identified nucleotide variants in the genome and transcriptome
Chun-Xiao Song et al.
NATURE BIOTECHNOLOGY (2012)
BLUEPRINT to decode the epigenetic signature written in blood
David Adams et al.
NATURE BIOTECHNOLOGY (2012)
Tet-assisted bisulfite sequencing of 5-hydroxymethylcytosine
Miao Yu et al.
NATURE PROTOCOLS (2012)
Methylome analysis using MeDIP-seq with low DNA concentrations
Oluwatosin Taiwo et al.
NATURE PROTOCOLS (2012)
Functions of DNA methylation: islands, start sites, gene bodies and beyond
Peter A. Jones
NATURE REVIEWS GENETICS (2012)
Analysing and interpreting DNA methylation data
Christoph Bock
NATURE REVIEWS GENETICS (2012)
Amplification-free whole-genome bisulfite sequencing by post-bisulfite adaptor tagging
Fumihito Miura et al.
NUCLEIC ACIDS RESEARCH (2012)
A Comparison of the Whole Genome Approach of MeDIP-Seq to the Targeted Approach of the Infinium HumanMethylation450 BeadChip® for Methylome Profiling
Christine Clark et al.
PLOS ONE (2012)
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
Kasper D. Hansen et al.
GENOME BIOLOGY (2012)
methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles
Altuna Akalin et al.
GENOME BIOLOGY (2012)
Resources for methylome analysis suitable for gene knockout studies of potential epigenome modifiers
Gareth A. Wilson et al.
GIGASCIENCE (2012)
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
Felix Krueger et al.
BIOINFORMATICS (2011)
MethylCoder: software pipeline for bisulfite-treated sequences
Brent Pedersen et al.
BIOINFORMATICS (2011)
Adaptive seeds tame genomic sequence comparison
Szymon M. Kielbasa et al.
GENOME RESEARCH (2011)
A novel approach identifies new differentially methylated regions (DMRs) associated with imprinted genes
Sanaa Choufani et al.
GENOME RESEARCH (2011)
High density DNA methylation array with single CpG site resolution
Marina Bibikova et al.
GENOMICS (2011)
Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling
Hongcang Gu et al.
NATURE PROTOCOLS (2011)
The UCSC Genome Browser database: update 2011
Pauline A. Fujita et al.
NUCLEIC ACIDS RESEARCH (2011)
A comparative analysis of DNA methylation across human embryonic stem cell lines
Pao-Yang Chen et al.
GENOME BIOLOGY (2011)
Quantification of Fetal DNA by Use of Methylation-Based DNA Discrimination
Anders O. H. Nygren et al.
CLINICAL CHEMISTRY (2010)
Evaluation of affinity-based genome-wide DNA methylation data: Effects of CpG density, amplification bias, and copy number variation
Mark D. Robinson et al.
GENOME RESEARCH (2010)
Dynamic changes in the human methylome during differentiation
Louise Laurent et al.
GENOME RESEARCH (2010)
A window into third-generation sequencing
Eric E. Schadt et al.
HUMAN MOLECULAR GENETICS (2010)
Conserved role of intragenic DNA methylation in regulating alternative promoters
Alika K. Maunakea et al.
NATURE (2010)
Quantitative comparison of genome-wide DNA methylation mapping technologies
Christoph Bock et al.
NATURE BIOTECHNOLOGY (2010)
Single base-resolution methylome of the silkworm reveals a sparse epigenomic map
Hui Xiang et al.
NATURE BIOTECHNOLOGY (2010)
The NIH Roadmap Epigenomics Mapping Consortium
Bradley E. Bernstein et al.
NATURE BIOTECHNOLOGY (2010)
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
Julie A. Law et al.
NATURE REVIEWS GENETICS (2010)
Principles and challenges of genome-wide DNA methylation analysis
Peter W. Laird
NATURE REVIEWS GENETICS (2010)
Whole-genome DNA methylation profiling using MethylCap-seq
Arie B. Brinkman et al.
METHODS (2010)
MBD-isolated Genome Sequencing provides a high-throughput and comprehensive survey of DNA methylation in the human genome
David Serre et al.
NUCLEIC ACIDS RESEARCH (2010)
The Behaviour of 5-Hydroxymethylcytosine in Bisulfite Sequencing
Yun Huang et al.
PLOS ONE (2010)
Conservation and divergence of methylation patterning in plants and animals
Suhua Feng et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
BSMAP: whole genome bisulfite sequence MAPping program
Yuanxin Li et al.
BMC BIOINFORMATICS (2009)
Human DNA methylomes at base resolution show widespread epigenomic differences
Ryan Lister et al.
NATURE (2009)
The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores
Rafael A. Irizarry et al.
NATURE GENETICS (2009)
High-throughput bisulfite sequencing in mammalian genomes
Zachary D. Smith et al.
METHODS (2009)
Real-Time DNA Sequencing from Single Polymerase Molecules
John Eid et al.
SCIENCE (2009)
Genome-Wide Demethylation of Arabidopsis Endosperm
Tzung-Fu Hsieh et al.
SCIENCE (2009)
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
Ryan Lister et al.
CELL (2008)
Comprehensive high-throughput arrays for relative methylation (CHARM)
Rafael A. Irizarry et al.
GENOME RESEARCH (2008)
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
Shawn J. Cokus et al.
NATURE (2008)
A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis
Thomas A. Down et al.
NATURE BIOTECHNOLOGY (2008)
Development -: DNA methylation in Drosophila melanogaster
F Lyko et al.
NATURE (2000)
Share Paper
