4.3 Article

Identification of activated enhancers and linked transcription factors in breast, prostate, and kidney tumors by tracing enhancer networks using epigenetic traits

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Enhancer methylation dynamics contribute to cancer plasticity and patient mortality

Rachel E. Bell et al.

GENOME RESEARCH (2016)

Article Biochemistry & Molecular Biology

The Molecular Taxonomy of Primary Prostate Cancer

Adam Abeshouse et al.

Article Oncology

Identification of a Candidate Gene Panel for the Early Diagnosis of Prostate Cancer

Gisele H. J. M. Leyten et al.

CLINICAL CANCER RESEARCH (2015)

Article Biochemical Research Methods

Highly specific epigenome editing by CRISPR-Cas9 repressors for silencing of distal regulatory elements

Pratiksha I. Thakore et al.

NATURE METHODS (2015)

Article Endocrinology & Metabolism

The role of HOXC6 in prostate cancer development

Agus Rizal A. H. Hamid et al.

PROSTATE (2015)

Article Biotechnology & Applied Microbiology

Inferring regulatory element landscapes and transcription factor networks from cancer methylomes

Lijing Yao et al.

GENOME BIOLOGY (2015)

Editorial Material Andrology

Prostate cancer metastasis-driving genes: hurdles and potential approaches in their identification

Yan Ting Chiang et al.

ASIAN JOURNAL OF ANDROLOGY (2014)

Review Genetics & Heredity

Identifying and mitigating bias in next-generation sequencing methods for chromatin biology

Clifford A. Meyer et al.

NATURE REVIEWS GENETICS (2014)

Article Biotechnology & Applied Microbiology

RNA Sequencing Reveals Upregulation of RUNX1-RUNX1T1 Gene Signatures in Clear Cell Renal Cell Carcinoma

Zuquan Xiong et al.

BIOMED RESEARCH INTERNATIONAL (2014)

Article Biotechnology & Applied Microbiology

Global loss of DNA methylation uncovers intronic enhancers in genes showing expression changes

Adam Blattler et al.

GENOME BIOLOGY (2014)

Article Biochemistry & Molecular Biology

GATA3 acts upstream of FOXA1 in mediating ESR1 binding by shaping enhancer accessibility

Vasiliki Theodorou et al.

GENOME RESEARCH (2013)

Review Biochemistry & Molecular Biology

CaMKK2: a novel target for shaping the androgen-regulated tumor ecosystem

Luigi Racioppi

TRENDS IN MOLECULAR MEDICINE (2013)

Article Biotechnology & Applied Microbiology

DNA methylation of distal regulatory sites characterizes dysregulation of cancer genes

Dvir Aran et al.

GENOME BIOLOGY (2013)

Article Biochemistry & Molecular Biology

GENCODE: The reference human genome annotation for The ENCODE Project

Jennifer Harrow et al.

GENOME RESEARCH (2012)

Editorial Material Multidisciplinary Sciences

FORUM: Genomics ENCODE explained

Joseph R. Ecker

NATURE (2012)

Article Multidisciplinary Sciences

An integrated encyclopedia of DNA elements in the human genome

Ian Dunham et al.

NATURE (2012)

Article Multidisciplinary Sciences

The accessible chromatin landscape of the human genome

Robert E. Thurman et al.

NATURE (2012)

Article Genetics & Heredity

Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer

Christopher E. Barbieri et al.

NATURE GENETICS (2012)

Article Biotechnology & Applied Microbiology

Cell type-specific binding patterns reveal that TCF7L2 can be tethered to the genome by association with GATA3

Seth Frietze et al.

GENOME BIOLOGY (2012)

Article Biochemical Research Methods

FIMO: scanning for occurrences of a given motif

Charles E. Grant et al.

BIOINFORMATICS (2011)

Article Multidisciplinary Sciences

A unique chromatin signature uncovers early developmental enhancers in humans

Alvaro Rada-Iglesias et al.

NATURE (2011)

Article Multidisciplinary Sciences

Mapping and analysis of chromatin state dynamics in nine human cell types

Jason Ernst et al.

NATURE (2011)

Article Oncology

Screening for Prostate Cancer

Otis W. Brawley et al.

CA-A CANCER JOURNAL FOR CLINICIANS (2009)

Article Multidisciplinary Sciences

Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

A Subramanian et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemistry & Molecular Biology

Loss of HOXC6 expression induces apoptosis in prostate cancer cells

S Ramachandran et al.

ONCOGENE (2005)