Related references
Note: Only part of the references are listed.Phylogenomics of Lophotrochozoa with Consideration of Systematic Error
Kevin M. Kocot et al.
SYSTEMATIC BIOLOGY (2017)
Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics
Scott V. Edwards et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2016)
The gene tree delusion
Mark S. Springer et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2016)
Bone-eating Osedax worms lived on Mesozoic marine reptile deadfalls
Silvia Danise et al.
BIOLOGY LETTERS (2015)
Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants
Stephen A. Smith et al.
BMC EVOLUTIONARY BIOLOGY (2015)
A Dwarf Male Reversal in Bone-Eating Worms
Greg W. Rouse et al.
CURRENT BIOLOGY (2015)
Mitogenomics reveals phylogeny and repeated motifs in control regions of the deep-sea family Siboglinidae (Annelida)
Yuanning Li et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2015)
Error, signal, and the placement of Ctenophora sister to all other animals
Nathan V. Whelan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Coalescent methods for estimating species trees from phylogenomic data
Liang Liu et al.
JOURNAL OF SYSTEMATICS AND EVOLUTION (2015)
ASTRAL: genome-scale coalescent-based species tree estimation
S. Mirarab et al.
BIOINFORMATICS (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Selecting optimal partitioning schemes for phylogenomic datasets
Robert Lanfear et al.
BMC EVOLUTIONARY BIOLOGY (2014)
Phylogenomics Resolves a Spider Backbone Phylogeny and Rejects a Prevailing Paradigm for Orb Web Evolution
Jason E. Bond et al.
CURRENT BIOLOGY (2014)
Illuminating the Base of the Annelid Tree Using Transcriptomics
Anne Weigert et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
BaCoCa - A heuristic software tool for the parallel assessment of sequence biases in hundreds of gene and taxon partitions
Patrick Kueck et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2014)
Species tree estimation of North American chorus frogs (Hylidae: Pseudacris) with parallel tagged amplicon sequencing
Lisa N. Barrow et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2014)
Phylogenetic analysis at deep timescales: Unreliable gene trees, bypassed hidden support, and the coalescence/concatalescence conundrum
John Gatesy et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2014)
Phylogenomics resolves the timing and pattern of insect evolution
Bernhard Misof et al.
SCIENCE (2014)
The multispecies coalescent model and land plant origins: a reply to Springer and Gatesy
Bojian Zhong et al.
TRENDS IN PLANT SCIENCE (2014)
MICROEVOLUTIONARY PROCESSES GENERATE PHYLOGENOMIC DISCORDANCE AT ANCIENT DIVERGENCES
Jeffrey C. Oliver
EVOLUTION (2013)
STRAW: Species TRee Analysis Web server
Timothy I. Shaw et al.
NUCLEIC ACIDS RESEARCH (2013)
Concatenation versus coalescence versus concatalescence
John Gatesy et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Reply to Gatesy and Springer: The multispecies coalescent model can effectively handle recombination and gene tree heterogeneity
Shaoyuan Wu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Bone-eating worms from the Antarctic: the contrasting fate of whale and wood remains on the Southern Ocean seafloor
Adrian G. Glover et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2013)
Origin of land plants using the multispecies coalescent model
Bojian Zhong et al.
TRENDS IN PLANT SCIENCE (2013)
PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses
Robert Lanfear et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
Is Recombination a Problem for Species-Tree Analyses?
Hayley C. Lanier et al.
SYSTEMATIC BIOLOGY (2012)
Detecting the symplesiomorphy trap: a multigene phylogenetic analysis of terebelliform annelids
Min Zhong et al.
BMC EVOLUTIONARY BIOLOGY (2011)
Acoelomorph flatworms are deuterostomes related to Xenoturbella
Herve Philippe et al.
NATURE (2011)
Phylogenomics reveals deep molluscan relationships
Kevin M. Kocot et al.
NATURE (2011)
Phylogenomic analyses unravel annelid evolution
Torsten H. Struck et al.
NATURE (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
New Perspectives on the Ecology and Evolution of Siboglinid Tubeworms
Ana Hilario et al.
PLOS ONE (2011)
Estimating Species Trees from Unrooted Gene Trees
Liang Liu et al.
SYSTEMATIC BIOLOGY (2011)
BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis
Bret R. Larget et al.
BIOINFORMATICS (2010)
A maximum pseudo-likelihood approach for estimating species trees under the coalescent model
Liang Liu et al.
BMC EVOLUTIONARY BIOLOGY (2010)
Bayesian Inference of Species Trees from Multilocus Data
Joseph Heled et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price et al.
PLOS ONE (2010)
PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
Nicolas Lartillot et al.
BIOINFORMATICS (2009)
HaMStR: Profile hidden markov model based search for orthologs in ESTs
Ingo Ebersberger et al.
BMC EVOLUTIONARY BIOLOGY (2009)
Phylogenomics Revives Traditional Views on Deep Animal Relationships
Herve Philippe et al.
CURRENT BIOLOGY (2009)
A Monte Carlo Approach Successfully Identifies Randomness in Multiple Sequence Alignments : A More Objective Means of Data Exclusion
Bernhard Misof et al.
SYSTEMATIC BIOLOGY (2009)
The Effect of Ambiguous Data on Phylogenetic Estimates Obtained by Maximum Likelihood and Bayesian Inference
Alan R. Lemmon et al.
SYSTEMATIC BIOLOGY (2009)
Estimating Species Phylogenies Using Coalescence Times among Sequences
Liang Liu et al.
SYSTEMATIC BIOLOGY (2009)
Endosymbionts of Siboglinum fiordicum and the phylogeny of bacterial endosymbionts in Siboglinidae (Annelida)
Daniel J. Thornhill et al.
BIOLOGICAL BULLETIN (2008)
Additional Molecular Support for the New Chordate Phylogeny
Frederic Delsuc et al.
GENESIS (2008)
Broad phylogenomic sampling improves resolution of the animal tree of life
Casey W. Dunn et al.
NATURE (2008)
Characterization of bacterial community structure in vestimentiferan tubeworm Ridgeia piscesae trophosomes
Leslie S. -L. Chao et al.
MARINE ECOLOGY-AN EVOLUTIONARY PERSPECTIVE (2007)
Subtype variation among bacterial endosymbionts of tubeworms (Annelida : Siboglinidae) from the Gulf of California
Robert C. Vrijenhoek et al.
BIOLOGICAL BULLETIN (2007)
Broad taxon and gene sampling indicate that chaetognaths are protostomes
David Q. Matus et al.
CURRENT BIOLOGY (2006)
Horizontal endosymbiont transmission in hydrothermal vent tubeworms
AD Nussbaumer et al.
NATURE (2006)
Tunicates and not cephalochordates are the closest living relatives of vertebrates
F Delsuc et al.
NATURE (2006)
World-wide whale worms?: A new species of Osedax from the shallow north Atlantic
AG Glover et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2005)
Genome sequencing in microfabricated high-density picolitre reactors
M Margulies et al.
NATURE (2005)
Evolutionary innovation: a bone-eating marine symbiosis
SK Goffredi et al.
ENVIRONMENTAL MICROBIOLOGY (2005)
Phylogenomics and the reconstruction of the tree of life
F Delsuc et al.
NATURE REVIEWS GENETICS (2005)
ProtTest: selection of best-fit models of protein evolution
F Abascal et al.
BIOINFORMATICS (2005)
Osedax:: Bone-eating marine worms with dwarf males
GW Rouse et al.
SCIENCE (2004)
The phylogenetic position of Siboglinidae (Annelida) inferred from 18S rRNA, 28S rRNA and morphological data
V Rousset et al.
CLADISTICS (2004)
Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models
JP Huelsenbeck et al.
SYSTEMATIC BIOLOGY (2004)
A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process
N Lartillot et al.
MOLECULAR BIOLOGY AND EVOLUTION (2004)
MrBayes 3: Bayesian phylogenetic inference under mixed models
F Ronquist et al.
BIOINFORMATICS (2003)
Phylogeny of Vestimentifera (Siboglinidae, Annelida) inferred from morphology
A Schulze
ZOOLOGICA SCRIPTA (2003)
Siboglinid evolution shaped by habitat preference and sulfide tolerance
A Schulze et al.
HYDROBIOLOGIA (2003)
Are hydrothermal vent animals living fossils?
CTS Little et al.
TRENDS IN ECOLOGY & EVOLUTION (2003)
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
K Katoh et al.
NUCLEIC ACIDS RESEARCH (2002)
Unsegmented annelids? Possible origins of four lophotrochozoan worm taxa
KM Halanych et al.
INTEGRATIVE AND COMPARATIVE BIOLOGY (2002)
An approximately unbiased test of phylogenetic tree selection
H Shimodaira
SYSTEMATIC BIOLOGY (2002)
CONSEL: for assessing the confidence of phylogenetic tree selection
H Shimodaira et al.
BIOINFORMATICS (2001)
Molecular evidence that Sclerolinum brattstromi is closely related to vestimentiferans, not to frenulate pogonophorans (Siboglinidae, Annelida)
KM Halanych et al.
BIOLOGICAL BULLETIN (2001)