4.8 Article

Synthetic recombinase-based state machines in living cells

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

A population-based temporal logic gate for timing and recording chemical events

Victoria Hsiao et al.

MOLECULAR SYSTEMS BIOLOGY (2016)

Article Medicine, General & Internal

Effect of Mutation Order on Myeloproliferative Neoplasms

Christina A. Ortmann et al.

NEW ENGLAND JOURNAL OF MEDICINE (2015)

Article Biotechnology & Applied Microbiology

Development and Characterization of AND-Gate Dynamic Controllers With a Modular Synthetic GAL1 Core Promoter in Saccharomyces cerevisiae

Wei Suong Teo et al.

BIOTECHNOLOGY AND BIOENGINEERING (2014)

Article Biochemistry & Molecular Biology

Multi-input CRISPR/Cas genetic circuits that interface host regulatory networks

Alec Ak Nielsen et al.

MOLECULAR SYSTEMS BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Designable DNA-binding domains enable construction of logic circuits in mammalian cells

Rok Gaber et al.

NATURE CHEMICAL BIOLOGY (2014)

Article Biochemical Research Methods

Permanent genetic memory with >1-byte capacity

Lei Yang et al.

NATURE METHODS (2014)

Article Biochemistry & Molecular Biology

Rapid metabolic pathway assembly and modification using serine integrase site-specific recombination

Sean D. Colloms et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Multidisciplinary Sciences

Highly modular bow-tie gene circuits with programmable dynamic behaviour

Laura Prochazka et al.

NATURE COMMUNICATIONS (2014)

Article Biochemical Research Methods

Framework for Engineering Finite State Machines in Gene Regulatory Networks

Kevin Oishi et al.

ACS SYNTHETIC BIOLOGY (2014)

Article Biotechnology & Applied Microbiology

Preadaptation to Cold Stress in Salmonella enterica Serovar Typhimurium Increases Survival during Subsequent Acid Stress Exposure

Jigna Shah et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)

Article Multidisciplinary Sciences

Dynamic regulatory network controlling TH17 cell differentiation

Nir Yosef et al.

NATURE (2013)

Article Multidisciplinary Sciences

Amplifying Genetic Logic Gates

Jerome Bonnet et al.

SCIENCE (2013)

Article Multidisciplinary Sciences

Genetic programs constructed from layered logic gates in single cells

Tae Seok Moon et al.

NATURE (2012)

Article Biotechnology & Applied Microbiology

Ribozyme-based insulator parts buffer synthetic circuits from genetic context

Chunbo Lou et al.

NATURE BIOTECHNOLOGY (2012)

Review Genetics & Heredity

Biomolecular computing systems: principles, progress and potential

Yaakov Benenson

NATURE REVIEWS GENETICS (2012)

Article Biochemistry & Molecular Biology

A tunable zinc finger-based framework for Boolean logic computation in mammalian cells

Jason J. Lohmueller et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Multidisciplinary Sciences

Rewritable digital data storage in live cells via engineered control of recombination directionality

Jerome Bonnet et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Review Immunology

Transcriptional control of effector and memory CD8+ T cell differentiation

Susan M. Kaech et al.

NATURE REVIEWS IMMUNOLOGY (2012)

Article Multidisciplinary Sciences

Distributed biological computation with multicellular engineered networks

Sergi Regot et al.

NATURE (2011)

Review Biochemical Research Methods

Serine recombinases as tools for genome engineering

William R. A. Brown et al.

METHODS (2011)

Article Biochemistry & Molecular Biology

Design, construction and characterization of a set of insulated bacterial promoters

Joseph H. Davis et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Multidisciplinary Sciences

Engineering modular and orthogonal genetic logic gates for robust digital-like synthetic biology

Baojun Wang et al.

NATURE COMMUNICATIONS (2011)

Article Multidisciplinary Sciences

Tracking, tuning, and terminating microbial physiology using synthetic riboregulators

Jarred M. Callura et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biotechnology & Applied Microbiology

Automated design of synthetic ribosome binding sites to control protein expression

Howard M. Salis et al.

NATURE BIOTECHNOLOGY (2009)

Article Biochemical Research Methods

Enzymatic assembly of DNA molecules up to several hundred kilobases

Daniel G. Gibson et al.

NATURE METHODS (2009)

Article Multidisciplinary Sciences

Synthetic Gene Networks That Count

Ari E. Friedland et al.

SCIENCE (2009)

Review Biochemistry & Molecular Biology

Stem cells, the molecular circuitry of pluripotency and nuclear reprogramming

Rudolf Jaenisch et al.

Article Cell & Tissue Engineering

Sequential expression of pluripotency markers during direct reprogramming of mouse somatic cells

Tobias Brambrink et al.

CELL STEM CELL (2008)

Article Biochemistry & Molecular Biology

Conversion of Red Fluorescent Protein into a Bright Blue Probe

Oksana M. Subach et al.

CHEMISTRY & BIOLOGY (2008)

Article Biochemistry & Molecular Biology

A motif in the C-terminal domain of φC31 integrase controls the directionality of recombination

Paul A. Rowley et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Multidisciplinary Sciences

Two-step site selection for serine-integrase-mediated excision: DNA-directed integrase conformation and central dinucleotide proofreading

Pallavi Ghosh et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

Higher-order cellular information processing with synthetic RNA devices

Maung Nyan Win et al.

SCIENCE (2008)

Article Cell & Tissue Engineering

Efficient differentiation of functional hepatocytes from human embryonic stem cells

Sadhana Agarwal et al.

STEM CELLS (2008)

Article Biochemistry & Molecular Biology

A diversity of serine phage integrases mediate site-specific recombination in mammalian cells

Annahita Keravala et al.

MOLECULAR GENETICS AND GENOMICS (2006)

Article Biochemistry & Molecular Biology

Initial transcribed sequence mutations specifically affect promoter escape properties

Lilian M. Hsu et al.

BIOCHEMISTRY (2006)

Article Biotechnology & Applied Microbiology

A tightly regulated inducible expression system utilizing the fim inversion recombination switch

TS Ham et al.

BIOTECHNOLOGY AND BIOENGINEERING (2006)

Article Biochemistry & Molecular Biology

Synapsis in phage Bxb1 integration: Selection mechanism for the correct pair of recombination sites

P Ghosh et al.

JOURNAL OF MOLECULAR BIOLOGY (2005)

Article Biochemistry & Molecular Biology

Switching the polarity of a bacteriophage integration system

MCA Smith et al.

MOLECULAR MICROBIOLOGY (2004)

Article Biochemistry & Molecular Biology

Transcriptional interference between convergent promoters caused by elongation over the promoter

BP Callen et al.

MOLECULAR CELL (2004)

Review Multidisciplinary Sciences

Engineered gene circuits

J Hasty et al.

NATURE (2002)

Article Biochemistry & Molecular Biology

Conditionally amplifiable BACs: Switching from single-copy to high-copy vectors and genomic clones

J Wild et al.

GENOME RESEARCH (2002)

Article Microbiology

Phage TP901-1 site-specific integrase functions in human cells

SM Stoll et al.

JOURNAL OF BACTERIOLOGY (2002)

Article Multidisciplinary Sciences

A monomeric red fluorescent protein

RE Campbell et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Genetics & Heredity

Phage R4 integrase mediates site-specific integration in human cells

EC Olivares et al.

Article Multidisciplinary Sciences

A phage integrase directs efficient site-specific integration in human cells

AC Groth et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)