4.8 Article

A three-dimensional movie of structural changes in bacteriorhodopsin

Journal

SCIENCE
Volume 354, Issue 6319, Pages 1552-1557

Publisher

AMER ASSOC ADVANCEMENT SCIENCE
DOI: 10.1126/science.aah3497

Keywords

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Funding

  1. X-ray Free-Electron Laser Priority Strategy Program (Ministry of Education, Culture, Sports, Science and Technology of Japan)
  2. Strategic Basic Research Program (JST)
  3. RIKEN Pioneering Project Dynamic Structural Biology
  4. Swedish Research Council [VR 349-2011-6485, 2015-00560]
  5. Swedish Foundation for Strategic Research [SSF SRL 10-0036]
  6. Knut and Alice Wallenberg Foundation [KAW 2012.0284]
  7. French National Research Agency [ANR-11-JSV5-0009]
  8. Japan Society for the Promotion of Science KAKENHI [15H05476]
  9. European Community's Seventh Framework Program [290605]
  10. Swiss National Science Foundation [SNF 31003A_159558, SNF 310030_153145]
  11. NCCR-MUST/FAST program
  12. National Research Foundation of Korea [NRF-2015R1A5A1009962, NRF-2016R1A2B3010980]
  13. POSCO Green Science program
  14. Excellence Initiative of the German Federal Government via the Freie Universitat Berlin
  15. Excellence Initiative of the German State Government via the Freie Universitat Berlin
  16. Deutsche Forschungsgemeinschaft (DFG) through the Collaborative Research Center [SFB1078]
  17. Exploratory Research for Advanced Technology of the JST
  18. National Research Foundation of Korea [2016R1A2B3010980] Funding Source: Korea Institute of Science & Technology Information (KISTI), National Science & Technology Information Service (NTIS)
  19. Grants-in-Aid for Scientific Research [15H01055, 15K18523, 16H06315, 15H04338, 15H05476] Funding Source: KAKEN

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Bacteriorhodopsin (bR) is a light-driven proton pump and a model membrane transport protein. We used time-resolved serial femtosecond crystallography at an x-ray free electron laser to visualize conformational changes in bR from nanoseconds to milliseconds following photoactivation. An initially twisted retinal chromophore displaces a conserved tryptophan residue of transmembrane helix F on the cytoplasmic side of the protein while dislodging a key water molecule on the extracellular side. The resulting cascade of structural changes throughout the protein shows how motions are choreographed as bR transports protons uphill against a transmembrane concentration gradient.

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