4.5 Review

RNA binding to APOBEC deaminases; Not simply a substrate for C to U editing

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

DNA Editing of LTR Retrotransposons Reveals the Impact of APOBECs on Vertebrate Genomes

Binyamin A. Knisbacher et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Review Cell Biology

Trypanosome RNA editing: the complexity of getting U in and taking U out

Laurie K. Read et al.

WILEY INTERDISCIPLINARY REVIEWS-RNA (2016)

Review Cell Biology

To edit or not to edit: regulation of ADAR editing specificity and efficiency

Sarah N. Deffit et al.

WILEY INTERDISCIPLINARY REVIEWS-RNA (2016)

Review Cell Biology

Rapid and dynamic transcriptome regulation by RNA editing and RNA modifications

Konstantin Licht et al.

JOURNAL OF CELL BIOLOGY (2016)

Article Biochemistry & Molecular Biology

1.92 Angstrom Zinc-Free APOBEC3F Catalytic Domain Crystal Structure

Nadine M. Shaban et al.

JOURNAL OF MOLECULAR BIOLOGY (2016)

Article Biochemical Research Methods

Structural and functional assessment of APOBEC3G macromolecular complexes

Bogdan Polevoda et al.

METHODS (2016)

Review Biochemistry & Molecular Biology

The APOBEC Protein Family: United by Structure, Divergent in Function

Jason D. Salter et al.

TRENDS IN BIOCHEMICAL SCIENCES (2016)

Review Genetics & Heredity

DNA Editing by APOBECs: A Genomic Preserver and Transformer

Binyamin A. Knisbacher et al.

TRENDS IN GENETICS (2016)

Article Virology

The emerging role of long non-coding RNAs in HIV infection

Daniel C. Lazar et al.

VIRUS RESEARCH (2016)

Article Multidisciplinary Sciences

The DNA cytosine deaminase APOBEC3H haplotype I likely contributes to breast and lung cancer mutagenesis

Gabriel J. Starrett et al.

NATURE COMMUNICATIONS (2016)

Article Multidisciplinary Sciences

Crystal structures of APOBEC3G N-domain alone and its complex with DNA

Xiao Xiao et al.

NATURE COMMUNICATIONS (2016)

Article Microbiology

A Single Nucleotide Polymorphism in Human APOBEC3C Enhances Restriction of Lentiviruses

Cristina J. Wittkopp et al.

PLOS PATHOGENS (2016)

Article Biochemistry & Molecular Biology

Distribution of ADAT-Dependent Codons in the Human Transcriptome

Albert Rafels-Ybern et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2015)

Article Biochemistry & Molecular Biology

Natural Polymorphisms and Oligomerization of Human APOBEC3H Contribute to Single-stranded DNA Scanning Ability

Yuqing Feng et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2015)

Article Biochemistry & Molecular Biology

Crystal Structure of the DNA Deaminase APOBEC3B Catalytic Domain

Ke Shi et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2015)

Article Biochemistry & Molecular Biology

Characterization of the Catalytic Domain of Human APOBEC3B and the Critical Structural Role for a Conserved Methionine

Sachini U. Siriwardena et al.

JOURNAL OF MOLECULAR BIOLOGY (2015)

Editorial Material Biochemistry & Molecular Biology

RNA modification: the Golden Period 1995-2015

Henri Grosjean

Article Biochemistry & Molecular Biology

The ssDNA Mutator APOBEC3A Is Regulated by Cooperative Dimerization

Markus-Frederik Bohn et al.

STRUCTURE (2015)

Review Biochemistry & Molecular Biology

RNA rewriting, recoding, and rewiring in human disease

Maria Anna Zipeto et al.

TRENDS IN MOLECULAR MEDICINE (2015)

Review Biochemistry & Molecular Biology

APOBEC3 genes: retroviral restriction factors to cancer drivers

Stephen Henderson et al.

TRENDS IN MOLECULAR MEDICINE (2015)

Review Virology

APOBECs and virus restriction

Reuben S. Harris et al.

VIROLOGY (2015)

Article Multidisciplinary Sciences

APOBEC3A cytidine deaminase induces RNA editing in monocytes and macrophages

Shraddha Sharma et al.

NATURE COMMUNICATIONS (2015)

Article Biochemistry & Molecular Biology

RNA editing of microRNA prevents RNA-induced silencing complex recognition of target mRNA

Yalei Cui et al.

OPEN BIOLOGY (2015)

Article Oncology

RNA editing, epitranscriptomics, and processing in cancer progression

Keren L. Witkin et al.

CANCER BIOLOGY & THERAPY (2015)

Review Biochemistry & Molecular Biology

New Insights into the Biological Role of Mammalian ADARs; the RNA Editing Proteins

Niamh Mannion et al.

BIOMOLECULES (2015)

Review Biochemistry & Molecular Biology

The emerging role of RNA and DNA editing in cancer

Lotta Avesson et al.

BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER (2014)

Article Biochemistry & Molecular Biology

C to U RNA editing mediated by APOBEC1 requires RNA-binding protein RBM47

Nicolas Fossat et al.

EMBO REPORTS (2014)

Article Biochemistry & Molecular Biology

A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes

Lily Bazak et al.

GENOME RESEARCH (2014)

Article Multidisciplinary Sciences

Interaction of APOBEC3A with DNA Assessed by Atomic Force Microscopy

Luda S. Shlyakhtenko et al.

PLOS ONE (2014)

Article Multidisciplinary Sciences

A DNA Sequence Recognition Loop on APOBEC3A Controls Substrate Specificity

Eric C. Logue et al.

PLOS ONE (2014)

Review Biochemistry & Molecular Biology

Structure-Guided Analysis of the Human APOBEC3-HIV Restrictome

Halil Aydin et al.

STRUCTURE (2014)

Review Genetics & Heredity

AID and APOBEC deaminases: balancing DNA damage in epigenetics and immunity

Don-Marc Franchini et al.

EPIGENOMICS (2014)

Review Cell Biology

The multifaceted roles of RNA binding in APOBEC cytidine deaminase functions

Kimberly M. Prohaska et al.

WILEY INTERDISCIPLINARY REVIEWS-RNA (2014)

Review Biochemistry & Molecular Biology

ADAR Enzyme and miRNA Story: A Nucleotide that Can Make the Difference

Sara Tomaselli et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2013)

Article Biochemistry & Molecular Biology

Atomic force microscopy studies of APOBEC3G oligomerization and dynamics

Luda S. Shlyakhtenko et al.

JOURNAL OF STRUCTURAL BIOLOGY (2013)

Review Neurosciences

Deciphering the functions and regulation of brain-enriched A-to-I RNA editing

Jin Billy Li et al.

NATURE NEUROSCIENCE (2013)

Article Biochemistry & Molecular Biology

MODOMICS: a database of RNA modification pathways-2013 update

Magdalena A. Machnicka et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

Crystal Structure of the DNA Cytosine Deaminase APOBEC3F: The Catalytically Active and HIV-1 Vif-Binding Domain

Markus-Frederik Bohn et al.

STRUCTURE (2013)

Article Multidisciplinary Sciences

Structural determinants of HIV-1 Vif susceptibility and DNA binding in APOBEC3F

Karen K. Siu et al.

NATURE COMMUNICATIONS (2013)

Article Multidisciplinary Sciences

NMR structure of human restriction factor APOBEC3A reveals substrate binding and enzyme specificity

In-Ja L. Byeon et al.

NATURE COMMUNICATIONS (2013)

Review Cell Biology

Transfer RNA modifications: nature's combinatorial chemistry playground

Jane E. Jackman et al.

WILEY INTERDISCIPLINARY REVIEWS-RNA (2013)

Article Biochemistry & Molecular Biology

APOBEC2 Is a Monomer in Solution: Implications for APOBEC3G Models

Troy C. Krzysiak et al.

BIOCHEMISTRY (2012)

Article Biochemistry & Molecular Biology

Systematic identification of edited microRNAs in the human brain

Shahar Alon et al.

GENOME RESEARCH (2012)

Article Biochemistry & Molecular Biology

Single-stranded DNA Scanning and Deamination by APOBEC3G Cytidine Deaminase at Single Molecule Resolution

Gayan Senavirathne et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2012)

Review Immunology

An Evolutionary View of the Mechanism for Immune and Genome Diversity

Lucia Kato et al.

JOURNAL OF IMMUNOLOGY (2012)

Article Biochemistry & Molecular Biology

The APOBEC3C crystal structure and the interface for HIV-1 Vif binding

Shingo Kitamura et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)

Review Cell Biology

Functions and regulation of the APOBEC family of proteins

Harold C. Smith et al.

SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY (2012)

Review Biotechnology & Applied Microbiology

The ADAR protein family

Yiannis A. Savva et al.

GENOME BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Direct evidence that RNA inhibits APOBEC3G ssDNA cytidine deaminase activity

William M. McDougall et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2011)

Article Biochemistry & Molecular Biology

Transcriptome-wide sequencing reveals numerous APOBEC1 mRNA-editing targets in transcript 3′ UTRs

Brad R. Rosenberg et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2011)

Review Biochemistry & Molecular Biology

APOBEC3G: a double agent in defense

Harold C. Smith

TRENDS IN BIOCHEMICAL SCIENCES (2011)

Article Biochemistry & Molecular Biology

Deficiency in APOBEC2 Leads to a Shift in Muscle Fiber Type, Diminished Body Mass, and Myopathy

Yusuke Sato et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2010)

Article Biochemistry & Molecular Biology

Structural Model for Deoxycytidine Deamination Mechanisms of the HIV-1 Inactivation Enzyme APOBEC3G

Linda Chelico et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2010)

Article Biochemistry & Molecular Biology

Definition of the interacting interfaces of Apobec3G and HIV-1 Vif using MAPPIT mutagenesis analysis

Delphine Lavens et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

Quantitative profiling of the full APOBEC3 mRNA repertoire in lymphocytes and tissues: implications for HIV-1 restriction

Eric W. Refsland et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

Crystal Structure of the APOBEC3G Catalytic Domain Reveals Potential Oligomerization Interfaces

Shivender M. D. Shandilya et al.

STRUCTURE (2010)

Article Cell Biology

The mechanisms regulating the subcellular localization of AID

Anne-Marie Patenaude et al.

NUCLEUS (2010)

Article Biochemistry & Molecular Biology

Structure, interaction and real-time monitoring of the enzymatic reaction of wild-type APOBEC3G

Ayako Furukawa et al.

EMBO JOURNAL (2009)

Article Biochemistry & Molecular Biology

An Extended Structure of the APOBEC3G Catalytic Domain Suggests a Unique Holoenzyme Model

Elena Harjes et al.

JOURNAL OF MOLECULAR BIOLOGY (2009)

Article Virology

Defining APOBEC3 Expression Patterns in Human Tissues and Hematopoietic Cell Subsets

Fransje A. Koning et al.

JOURNAL OF VIROLOGY (2009)

Letter Biochemistry & Molecular Biology

Mechanisms of APOBEC3G-catalyzed processive deamination of deoxycytidine on single-stranded DNA

Linda Chelico et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Editing of HIV-1 RNA by the double-stranded RNA deaminase ADAR1 stimulates viral infection

Margherita Doria et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biology

Stochastic properties of processive cytidine DNA deaminases AID and APOBEC3G

Linda Chelico et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2009)

Article Multidisciplinary Sciences

Carboxy-terminal domain of AID required for its mRNA complex formation in vivo

Taichiro Nonaka et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Multidisciplinary Sciences

Model structure of APOBEC3C reveals a binding pocket modulating ribonucleic acid interaction required for encapsidation

Benjamin Stauch et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Microbiology

RNA-Dependent Oligomerization of APOBEC3G Is Required for Restriction of HIV-1

Hendrik Huthoff et al.

PLOS PATHOGENS (2009)

Article Biochemistry & Molecular Biology

AID Is Required for the Chromosomal Breaks in c-myc that Lead to c-myc/IgH Translocations

Davide F. Robbiani et al.

Article Biochemistry & Molecular Biology

APOBEC3G Subunits Self-associate via the C-terminal Deaminase Domain

Ryan P. Bennett et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2008)

Article Biochemistry & Molecular Biology

A model for oligomeric regulation of APOBEC3G cytosine deaminase-dependent restriction of HIV

Linda Chelico et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2008)

Article Immunology

Proteasomal degradation restricts the nuclear lifespan of AID

Said Aoufouchi et al.

JOURNAL OF EXPERIMENTAL MEDICINE (2008)

Review Biochemistry & Molecular Biology

Interaction with 7SL RNA but not with HIV-1 genomic RNA or p bodies is required for APOBEC3F virion packaging

Tao Wang et al.

JOURNAL OF MOLECULAR BIOLOGY (2008)

Article Multidisciplinary Sciences

Structure of the DNA deaminase domain of the HIV-1 restriction factor APOBEC3G

Kuan-Ming Chen et al.

NATURE (2008)

Article Biochemistry & Molecular Biology

Single-stranded RNA facilitates nucleocapsid: APOBEC3G complex formation

Hal P. Bogerd et al.

Article Biochemistry & Molecular Biology

All APOBEC3 family proteins differentially inhibit LINE-1 retrotransposition

Masanobu Kinomoto et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Genetics & Heredity

Population stratification of a common APOBEC gene deletion polymorphism

Jeffrey M. Kidd et al.

PLOS GENETICS (2007)

Article Biochemistry & Molecular Biology

Distinct patterns of cytokine regulation of APOBEC3G expression and activity in primary lymphocytes, macrophages, and dendritic cells

Kim S. Stopak et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2007)

Article Multidisciplinary Sciences

The APOBEC-2 crystal structure and functional implications for the deaminase AID

Courtney Prochnow et al.

NATURE (2007)

Article Biochemistry & Molecular Biology

Nanostructures of APOBEC3G support a hierarchical assembly model of high molecular mass ribonucleoprotein particles from dimeric subunits

Joseph E. Wedekind et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2006)

Article Biochemistry & Molecular Biology

APOBEC-1 and AID are nucleo-cytoplasmic trafficking proteins but APOBEC3G cannot traffic

Ryan P. Bennett et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2006)

Article Biochemistry & Molecular Biology

The anti-HIV-1 editing enzyme APOBEC3G binds HIV-1 RNA and messenger RNAs that shuttle between polysomes and stress granules

Susan L. Kozak et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2006)

Article Immunology

Structural phylogenetic analysis of activation-induced deaminase. function

H. Travis Ichikawa et al.

JOURNAL OF IMMUNOLOGY (2006)

Article Virology

Monomeric APOBEC3G is catalytically active and has antiviral activity

Sandrine Opi et al.

JOURNAL OF VIROLOGY (2006)

Review Immunology

AID in somatic hypermutation and class switch recombination

S Longerich et al.

CURRENT OPINION IN IMMUNOLOGY (2006)

Article Biochemistry & Molecular Biology

Metabolic regulation of ApoB mRNA editing is associated with phosphorylation of APOBEC-1 complementation factor

David M. Lehmann et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

Targeted deletion of the murine apobec-1 complementation factor (acf) gene results in embryonic lethality

V Blanc et al.

MOLECULAR AND CELLULAR BIOLOGY (2005)

Article Biochemistry & Molecular Biology

Mice deficient in APOBEC2 and APOBEC3

MC Mikl et al.

MOLECULAR AND CELLULAR BIOLOGY (2005)

Article Biochemistry & Molecular Biology

Crystal structure of tRNA adenosine deaminase (TadA) from Aquifex aeolicus

M Kuratani et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2005)

Review Biochemistry & Molecular Biology

Complex management: RNA editing in trypanosomes

KD Stuart et al.

TRENDS IN BIOCHEMICAL SCIENCES (2005)

Article Biochemistry & Molecular Biology

Evolution of the AID/APOBEC family of polynucleotide (deoxy)cytidine deaminases

SG Conticello et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Article Biochemistry & Molecular Biology

Ancient adaptive evolution of the primate antiviral DNA-editing enzyme APOBEC3G

SL Sawyer et al.

PLOS BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Rapid evolution of primate antiviral enzyme APOBEC3G

JZ Zhang et al.

HUMAN MOLECULAR GENETICS (2004)

Article Biochemistry & Molecular Biology

APOBEC3G is incorporated into virus-like particles by a direct interaction with HIV-1 Gag nucleocapsid protein

TM Alce et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2004)

Article Biochemistry & Molecular Biology

The interaction between HIV-1 Gag and APOBEC3G

S Cen et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2004)

Article Biochemistry & Molecular Biology

Functional domains of APOBEC3G required for antiviral activity

JL Li et al.

JOURNAL OF CELLULAR BIOCHEMISTRY (2004)

Review Immunology

AID: How does it aid antibody diversity?

T Honjo et al.

IMMUNITY (2004)

Article Multidisciplinary Sciences

The structure of a yeast RNA-editing deaminase provides insight into the fold and function of activation-induced deaminase and APOBEC-1

KF Xie et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Immunology

AID mediates hypermutation by deaminating single stranded DNA

SK Dickerson et al.

JOURNAL OF EXPERIMENTAL MEDICINE (2003)

Article Multidisciplinary Sciences

Transcription-targeted DNA deamination by the AID antibody diversification enzyme

J Chaudhuri et al.

NATURE (2003)

Article Biochemistry & Molecular Biology

RNA editing enzyme APOBEC1 and some of its homologs can act as DNA mutators

RS Harris et al.

MOLECULAR CELL (2002)

Article Immunology

DNA double-strand breaks: Prior to but not sufficient in targeting hypermutation

L Bross et al.

JOURNAL OF EXPERIMENTAL MEDICINE (2002)

Article Biochemistry & Molecular Biology

Two proteins essential for apolipoprotein B mRNA editing are expressed from a single gene through alternative splicing

GSC Dance et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2002)

Review Biochemistry & Molecular Biology

Somatic hypermutation of immunoglobulin genes: Merging mechanisms for genetic diversity

FN Papavasiliou et al.

Article Biotechnology & Applied Microbiology

An anthropoid-specific locus of orphan C to U RNA-editing enzymes on chromosome 22

A Jarmuz et al.

GENOMICS (2002)

Article Biochemistry & Molecular Biology

Identification of the yeast cytidine deaminase CDD1 as an orphan C→U RNA editase

GSC Dance et al.

NUCLEIC ACIDS RESEARCH (2001)

Review Biochemistry & Molecular Biology

Molecular mechanisms of apolipoprotein B mRNA editing

S Anant et al.

CURRENT OPINION IN LIPIDOLOGY (2001)