Related references
Note: Only part of the references are listed.Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea): Loss of the ndh gene suite and inverted repeat
Michael J. Sanderson et al.
AMERICAN JOURNAL OF BOTANY (2015)
Shifts in diversification rates linked to biogeographic movement into new areas: An example of a recent radiation in the Andes
Simon Uribe-Convers et al.
AMERICAN JOURNAL OF BOTANY (2015)
Plastome Evolution in Hemiparasitic Mistletoes
Gitte Petersen et al.
GENOME BIOLOGY AND EVOLUTION (2015)
Exploring the Limits for Reduction of Plastid Genomes: A Case Study of the Mycoheterotrophic Orchids Epipogium aphyllum and Epipogium roseum
Mikhail I. Schelkunov et al.
GENOME BIOLOGY AND EVOLUTION (2015)
A metacalibrated time-tree documents the early rise of flowering plant phylogenetic diversity
Susana Magallon et al.
NEW PHYTOLOGIST (2015)
A Revised Time Tree of the Asterids: Establishing a Temporal Framework For Evolutionary Studies of the Coffee Family (Rubiaceae)
Niklas Wikstrom et al.
PLOS ONE (2015)
The location and translocation of ndh genes of chloroplast origin in the Orchidaceae family
Choun-Sea Lin et al.
SCIENTIFIC REPORTS (2015)
Seven New Complete Plastome Sequences Reveal Rampant Independent Loss of the ndh Gene Family across Orchids and Associated Instability of the Inverted Repeat/Small Single-Copy Region Boundaries
Hyoung Tae Kim et al.
PLOS ONE (2015)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
A precise chloroplast genome of Nelumbo nucifera (Nelumbonaceae) evaluated with Sanger, Illumina MiSeq, and PacBio RS II sequencing platforms: insight into the plastid evolution of basal eudicots
Zhihua Wu et al.
BMC PLANT BIOLOGY (2014)
The Plastid Genome of Mycoheterotrophic Monocot Petrosavia stellaris Exhibits Both Gene Losses and Multiple Rearrangements
Maria D. Logacheva et al.
GENOME BIOLOGY AND EVOLUTION (2014)
Disproportional Plastome-Wide Increase of Substitution Rates and Relaxed Purifying Selection in Genes of Carnivorous Lentibulariaceae
Susann K. Wicke et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Investigating the Path of Plastid Genome Degradation in an Early-Transitional Clade of Heterotrophic Orchids, and Implications for Heterotrophic Angiosperms
Craig F. Barrett et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
On the adaptive value of cytoplasmic genomes in plants
Dan G. Bock et al.
MOLECULAR ECOLOGY (2014)
Whole Mitochondrial and Plastid Genome SNP Analysis of Nine Date Palm Cultivars Reveals Plastid Heteroplasmy and Close Phylogenetic Relationships among Cultivars
Jamal S. M. Sabir et al.
PLOS ONE (2014)
A LONG PCR BASED APPROACH FOR DNA ENRICHMENT PRIOR TO NEXT-GENERATION SEQUENCING FOR SYSTEMATIC STUDIES
Simon Uribe-Convers et al.
APPLICATIONS IN PLANT SCIENCES (2014)
PHYLOGENY AND ORIGINS OF HOLOPARASITISM IN OROBANCHACEAE
Joel R. McNeal et al.
AMERICAN JOURNAL OF BOTANY (2013)
Parasitic plants have increased rates of molecular evolution across all three genomes
Lindell Bromham et al.
BMC EVOLUTIONARY BIOLOGY (2013)
DAMBE5: A Comprehensive Software Package for Data Analysis in Molecular Biology and Evolution
Xuhua Xia
MOLECULAR BIOLOGY AND EVOLUTION (2013)
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
Koichiro Tamura et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Mechanisms of Functional and Physical Genome Reduction in Photosynthetic and Nonphotosynthetic Parasitic Plants of the Broomrape Family
Susann Wicke et al.
PLANT CELL (2013)
Complete Chloroplast Genome Sequence of Holoparasite Cistanche deserticola (Orobanchaceae) Reveals Gene Loss and Horizontal Gene Transfer from Its Host Haloxylon ammodendron (Chenopodiaceae)
Xi Li et al.
PLOS ONE (2013)
The Plastid Genome of Najas flexilis: Adaptation to Submersed Environments Is Accompanied by the Complete Loss of the NDH Complex in an Aquatic Angiosperm
Elena L. Peredo et al.
PLOS ONE (2013)
Single-Copy Nuclear Genes Place Haustorial Hydnoraceae within Piperales and Reveal a Cretaceous Origin of Multiple Parasitic Angiosperm Lineages
Julia Naumann et al.
PLOS ONE (2013)
THE PLASTID GENOME OF THE MYCOHETEROTROPHIC CORALLORHIZA STRIATA (ORCHIDACEAE) IS IN THE RELATIVELY EARLY STAGES OF DEGRADATION
Craig F. Barrett et al.
AMERICAN JOURNAL OF BOTANY (2012)
CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences
Chang Liu et al.
BMC GENOMICS (2012)
Multiple and different genomic rearrangements of the rbcL gene are present in the parasitic orchid Neottia nidus-avis
Donata Cafasso et al.
GENOME (2012)
Recent Acceleration of Plastid Sequence and Structural Evolution Coincides with Extreme Mitochondrial Divergence in the Angiosperm Genus Silene
Daniel B. Sloan et al.
GENOME BIOLOGY AND EVOLUTION (2012)
PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses
Robert Lanfear et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
The Complete Chloroplast and Mitochondrial Genome Sequences of Boea hygrometrica: Insights into the Evolution of Plant Organellar Genomes
Tongwu Zhang et al.
PLOS ONE (2012)
Recent loss of plastid-encoded ndh genes within Erodium (Geraniaceae)
J. Chris Blazier et al.
PLANT MOLECULAR BIOLOGY (2011)
THE AGE AND DIVERSIFICATION OF THE ANGIOSPERMS RE-REVISITED
Charles D. Bell et al.
AMERICAN JOURNAL OF BOTANY (2010)
Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae
Fu-Hui Wu et al.
BMC PLANT BIOLOGY (2010)
Insights into the Evolution of Mitochondrial Genome Size from Complete Sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae)
Andrew J. Alverson et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
The evolution of parasitism in plants
James H. Westwood et al.
TRENDS IN PLANT SCIENCE (2010)
Functional gene losses occur with minimal size reduction in the plastid genome of the parasitic liverwort Aneura mirabilis
Norman J. Wickett et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Genome-wide analyses of Geraniaceae plastid DNA reveal unprecedented patterns of increased nucleotide substitutions
Mary M. Guisinger et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genus Cuscuta
Joel R. McNeal et al.
BMC PLANT BIOLOGY (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Arabidopsis orthologs of maize chloroplast splicing factors promote splicing of orthologous and species-specific group II introns
Yukari Asakura et al.
PLANT PHYSIOLOGY (2006)
Phylogeny of the parasitic plant family Orobanchaceae inferred from phytochrome A
Jonathan R. Bennett et al.
AMERICAN JOURNAL OF BOTANY (2006)
The chloroplast genome of Phalaenopsis aphrodite (Orchidaceae):: Comparative analysis of evolutionary rate with that of grasses and its phylogenetic implications
CC Chang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
JZ Zhang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
The evolution and expression of rbcL in holoparasitic sister-genera Harveya and Hyobanche (Orobanchaceae)
CP Randle et al.
AMERICAN JOURNAL OF BOTANY (2005)
Rate variation in parasitic plants: correlated and uncorrelated patterns among plastid genes of different function
ND Young et al.
BMC EVOLUTIONARY BIOLOGY (2005)
Phylogeny and biogeography of Orobanchaceae
AD Wolfe et al.
FOLIA GEOBOTANICA (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Molecular phylogenetic dating of asterid flowering plants shows early Cretaceous diversification
K Bremer et al.
SYSTEMATIC BIOLOGY (2004)
An index of substitution saturation and its application
XH Xia et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2003)
Disintegration of the Scrophulariaceae
RG Olmstead et al.
AMERICAN JOURNAL OF BOTANY (2001)
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
J Castresana
MOLECULAR BIOLOGY AND EVOLUTION (2000)