Related references
Note: Only part of the references are listed.The UCSC Genome Browser database: 2016 update
Matthew L. Speir et al.
NUCLEIC ACIDS RESEARCH (2016)
Genome-wide identification and characterisation of HOT regions in the human genome
Hao Li et al.
BMC GENOMICS (2016)
Functional annotation of HOT regions in the human genome: implications for human disease and cancer
Hao Li et al.
SCIENTIFIC REPORTS (2015)
An integrative analysis of TFBS-clustered regions reveals new transcriptional regulation models on the accessible chromatin landscape
Hebing Chen et al.
SCIENTIFIC REPORTS (2015)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
FIMO: scanning for occurrences of a given motif
Charles E. Grant et al.
BIOINFORMATICS (2011)
Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
Roger Pique-Regi et al.
GENOME RESEARCH (2011)
UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DNA interactions
Kimberly Robasky et al.
NUCLEIC ACIDS RESEARCH (2011)
RSAT 2011: regulatory sequence analysis tools
Morgane Thomas-Chollier et al.
NUCLEIC ACIDS RESEARCH (2011)
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
Sven Heinz et al.
MOLECULAR CELL (2010)
The NIH Roadmap Epigenomics Mapping Consortium
Bradley E. Bernstein et al.
NATURE BIOTECHNOLOGY (2010)
JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles
Elodie Portales-Casamar et al.
NUCLEIC ACIDS RESEARCH (2010)
Binding Site Turnover Produces Pervasive Quantitative Changes in Transcription Factor Binding between Closely Related Drosophila Species
Robert K. Bradley et al.
PLOS BIOLOGY (2010)
Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions
Stewart MacArthur et al.
GENOME BIOLOGY (2009)
Statistical significance of cis-regulatory modules
Dustin E. Schones et al.
BMC BIOINFORMATICS (2007)
Practical strategies for discovering regulatory DNA sequence motifs
Kenzie D. MacIsaac et al.
PLOS COMPUTATIONAL BIOLOGY (2006)
TRANSFAC (R) and its module TRANSCompel (R): transcriptional gene regulation in eukaryotes
V. Matys et al.
NUCLEIC ACIDS RESEARCH (2006)
Assessing computational tools for the discovery of transcription factor binding sites
M Tompa et al.
NATURE BIOTECHNOLOGY (2005)
Transcriptional regulatory code of a eukaryotic genome
CT Harbison et al.
NATURE (2004)
CisML: an XML-based format for sequence motif detection software
PM Haverty et al.
BIOINFORMATICS (2004)
The positive false discovery rate: A Bayesian interpretation and the q-value
JD Storey
ANNALS OF STATISTICS (2003)
A direct approach to false discovery rates
JD Storey
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY (2002)
Share Paper
