4.8 Article

g:Profiler-a web server for functional interpretation of gene lists (2016 update)

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

Cytoscape.js: a graph theory library for visualisation and analysis

Max Franz et al.

BIOINFORMATICS (2016)

Article Biochemistry & Molecular Biology

Genetic subdivision and candidate genes under selection in North American grey wolves

Rena M. Schweizer et al.

MOLECULAR ECOLOGY (2016)

Article Biochemistry & Molecular Biology

Ensembl Genomes 2016: more genomes, more complexity

Paul Julian Kersey et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

The Reactome pathway Knowledgebase

Antonio Fabregat et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

Ensembl 2016

Andrew Yates et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

Functional Genomic Landscape of Human Breast Cancer Drivers, Vulnerabilities, and Resistance

Richard Marcotte et al.

Article Psychiatry

Human DNA methylomes of neurodegenerative diseases show common epigenomic patterns

J. V. Sanchez-Mut et al.

TRANSLATIONAL PSYCHIATRY (2016)

Article Biochemical Research Methods

Pathway and network analysis of cancer genomes

Pau Creixell et al.

NATURE METHODS (2015)

Article Biochemistry & Molecular Biology

Babelomics 5.0: functional interpretation for new generations of genomic data

Roberto Alonso et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap

Tauno Metsalu et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Multidisciplinary Sciences

Single cell-derived clonal analysis of human glioblastoma links functional and genomic heterogeneity

Mona Meyer et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Multidisciplinary Sciences

Tissue-based map of the human proteome

Mathias Uhlen et al.

SCIENCE (2015)

Article Biochemistry & Molecular Biology

Gene Ontology Consortium: going forward

J. A. Blake et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

The BioGRID interaction database: 2015 update

Andrew Chatr-aryamontri et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

OMIM.org: Online Mendelian Inheritance in Man (OMIM®), an online catalog of human genes and genetic disorders

Joanna S. Amberger et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

ArrayExpress update-simplifying data submissions

Nikolay Kolesnikov et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

Gene: a gene-centered information resource at NCBI

Garth R. Brown et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data

Sebastian Koehler et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

miRBase: annotating high confidence microRNAs using deep sequencing data

Ana Kozomara et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

Data, information, knowledge and principle: back to metabolism in KEGG

Minoru Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biotechnology & Applied Microbiology

Dissemination of scientific software with Galaxy ToolShed

Daniel Blankenberg et al.

GENOME BIOLOGY (2014)

Article Biochemical Research Methods

BioJS: an open source JavaScript framework for biological data visualization

John Gomez et al.

BIOINFORMATICS (2013)

Article Biochemistry & Molecular Biology

Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers

Jueri Reimand et al.

MOLECULAR SYSTEMS BIOLOGY (2013)

Article Biochemical Research Methods

Large-scale gene function analysis with the PANTHER classification system

Huaiyu Mi et al.

NATURE PROTOCOLS (2013)

Article Biochemistry & Molecular Biology

NCBI GEO: archive for functional genomics data sets-update

Tanya Barrett et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013

Jing Wang et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemical Research Methods

DAVID-WS: a stateful web service to facilitate gene/protein list analysis

Xiaoli Jiao et al.

BIOINFORMATICS (2012)

Article Biotechnology & Applied Microbiology

Chipster: user-friendly analysis software for microarray and other high-throughput data

M. Aleksi Kallio et al.

BMC GENOMICS (2011)

Article Biochemistry & Molecular Biology

g:Profiler-a web server for functional interpretation of gene lists (2011 update)

Jueri Reimand et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemistry & Molecular Biology

CORUM: the comprehensive resource of mammalian protein complexes-2009

Andreas Ruepp et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemical Research Methods

Next generation software for functional trend analysis

Gabriel F. Berriz et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

Eran Eden et al.

BMC BIOINFORMATICS (2009)

Article Biotechnology & Applied Microbiology

Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods

Priit Adler et al.

GENOME BIOLOGY (2009)

Article Biochemical Research Methods

Ontologizer 2.0 - a multifunctional tool for GO term enrichment analysis and data exploration

Sebastian Bauer et al.

BIOINFORMATICS (2008)

Article Biochemical Research Methods

The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation

Edgar Wingender

BRIEFINGS IN BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

g:Profiler -: a web-based toolset for functional profiling of gene lists from large-scale experiments

Jueri Reimand et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biochemical Research Methods

Using GOstats to test gene lists for GO term association

S. Falcon et al.

BIOINFORMATICS (2007)

Article Biotechnology & Applied Microbiology

The Sequence Ontology: a tool for the unification of genome annotations

K Eilbeck et al.

GENOME BIOLOGY (2005)

Article Biochemistry & Molecular Biology

dbSNP: the NCBI database of genetic variation

ST Sherry et al.

NUCLEIC ACIDS RESEARCH (2001)