Related references
Note: Only part of the references are listed.The Pfam protein families database: towards a more sustainable future
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2016)
GLProbs: Aligning Multiple Sequences Adaptively
Yongtao Ye et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2015)
A domain dictionary of trimeric autotransporter adhesins
Jens Bassler et al.
INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY (2015)
The EMBL-EBI bioinformatics web and programmatic tools framework
Weizhong Li et al.
NUCLEIC ACIDS RESEARCH (2015)
Anatomy of BioJS, an open source community for the life sciences
Guy Yachdav et al.
ELIFE (2015)
CDD: NCBI's conserved domain database
Aron Marchler-Bauer et al.
NUCLEIC ACIDS RESEARCH (2015)
STRING v10: protein-protein interaction networks, integrated over the tree of life
Damian Szklarczyk et al.
NUCLEIC ACIDS RESEARCH (2015)
UniProt: a hub for protein information
Alex Bateman et al.
NUCLEIC ACIDS RESEARCH (2015)
Axial helix rotation as a mechanism for signal regulation inferred from the crystallographic analysis of the E. coli serine chemoreceptor
Hedda U. Ferris et al.
JOURNAL OF STRUCTURAL BIOLOGY (2014)
SCOPe: Structural Classification of Proteins-extended, integrating SCOP and ASTRAL data and classification of new structures
Naomi K. Fox et al.
NUCLEIC ACIDS RESEARCH (2014)
PredictProtein-an open resource for online prediction of protein structural and functional features
Guy Yachdav et al.
NUCLEIC ACIDS RESEARCH (2014)
JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia
Robert M. Hanson et al.
ISRAEL JOURNAL OF CHEMISTRY (2013)
HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment
Michael Remmert et al.
NATURE METHODS (2012)
Mechanism of Regulation of Receptor Histidine Kinases
Hedda U. Ferris et al.
STRUCTURE (2012)
HHfrag: HMM-based fragment detection using HHpred
Ivan Kalev et al.
BIOINFORMATICS (2011)
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
Fabian Sievers et al.
MOLECULAR SYSTEMS BIOLOGY (2011)
GCView: the genomic context viewer for protein homology searches
Iwan Grin et al.
NUCLEIC ACIDS RESEARCH (2011)
The Mechanisms of HAMP-Mediated Signaling in Transmembrane Receptors
Hedda U. Ferris et al.
STRUCTURE (2011)
Accelerated Profile HMM Searches
Sean R. Eddy
PLOS COMPUTATIONAL BIOLOGY (2011)
ClubSub-P: cluster-based subcellular localization prediction for Gram-negative bacteria and archaea
Nagarajan Paramasivam et al.
FRONTIERS IN MICROBIOLOGY (2011)
Robust probabilistic superposition and comparison of protein structures
Martin Mechelke et al.
BMC BIOINFORMATICS (2010)
Measuring the conformational space of square four-helical bundles with the program samCC
Stanislaw Dunin-Horkawicz et al.
JOURNAL OF STRUCTURAL BIOLOGY (2010)
Evolution of Outer Membrane β-Barrels from an Ancestral ββ Hairpin
M. Remmert et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
Transmembrane protein topology prediction using support vector machines
Timothy Nugent et al.
BMC BIOINFORMATICS (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
SimShiftDB; local conformational restraints derived from chemical shift similarity searches on a large synthetic database
Simon W. Ginzinger et al.
JOURNAL OF BIOMOLECULAR NMR (2009)
HHomp-prediction and classification of outer membrane proteins
Michael Remmert et al.
NUCLEIC ACIDS RESEARCH (2009)
Sequence context-specific profiles for homology searching
A. Biegert et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Domain annotation of trimeric autotransporter adhesins - daTAA
Pawel Szczesny et al.
BIOINFORMATICS (2008)
Prediction of protein functional residues from sequence by probability density estimation
J. D. Fischer et al.
BIOINFORMATICS (2008)
De novo identification of highly diverged protein repeats by probabilistic consistency
A. Biegert et al.
BIOINFORMATICS (2008)
PDBalert: automatic, recurrent remote homology tracking and protein structure prediction
Vatsal Agarwal et al.
BMC STRUCTURAL BIOLOGY (2008)
TPRpred:: a tool for prediction of TPR-, PPR- and SELI-like repeats from protein sequences
Manjunatha R. Karpenahalli et al.
BMC BIOINFORMATICS (2007)
Comparative analysis of coiled-coil prediction methods
Markus Gruber et al.
JOURNAL OF STRUCTURAL BIOLOGY (2006)
The MPI Bioinformatics toolkit for protein sequence analysis
Andreas Biegert et al.
NUCLEIC ACIDS RESEARCH (2006)
HHsenser:: exhaustive transitive profile search using HMM-HMM comparison
Johannes Soeding et al.
NUCLEIC ACIDS RESEARCH (2006)
HHrep:: de novo protein repeat detection and the origin of TIM barrels
Johannes Soeding et al.
NUCLEIC ACIDS RESEARCH (2006)
Kalign - an accurate and fast multiple sequence alignment algorithm
T Lassmann et al.
BMC BIOINFORMATICS (2005)
The HHpred interactive server for protein homology detection and structure prediction
J Söding et al.
NUCLEIC ACIDS RESEARCH (2005)
REPPER-repeats and their periodicities in fibrous proteins
M Gruber et al.
NUCLEIC ACIDS RESEARCH (2005)
PAT: a protein analysis toolkit for integrated biocomputing on the web
J Gracy et al.
NUCLEIC ACIDS RESEARCH (2005)
ProbCons: Probabilistic consistency-based multiple sequence alignment
CB Do et al.
GENOME RESEARCH (2005)
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
R Overbeek et al.
NUCLEIC ACIDS RESEARCH (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Reconstruction of ancestral protein sequences and its applications
W Cai et al.
BMC EVOLUTIONARY BIOLOGY (2004)
Tracking repeats using significance and transitivity
Radek Szklarczyk et al.
BIOINFORMATICS (2004)
CLANS: a Java application for visualizing protein families based on pairwise similarity
T Frickey et al.
BIOINFORMATICS (2004)
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
K Katoh et al.
NUCLEIC ACIDS RESEARCH (2002)
An HMM model for coiled-coil domains and a comparison with PSSM-based predictions
M Delorenzi et al.
BIOINFORMATICS (2002)
T-Coffee: A novel method for fast and accurate multiple sequence alignment
C Notredame et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
The Protein Data Bank
HM Berman et al.
NUCLEIC ACIDS RESEARCH (2000)