Related references
Note: Only part of the references are listed.Effects of tRNA modification on translational accuracy depend on intrinsic codon-anticodon strength
Nandini Manickam et al.
NUCLEIC ACIDS RESEARCH (2016)
Nucleotide modifications within bacterial messenger RNAs regulate their translation and are able to rewire the genetic code
Thomas Philipp Hoernes et al.
NUCLEIC ACIDS RESEARCH (2016)
Post-transcriptional Modifications Modulate rRNA Structure and Ligand Interactions
Jun Jiang et al.
ACCOUNTS OF CHEMICAL RESEARCH (2016)
Facile Recoding of Selenocysteine in Nature
Takahito Mukai et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2016)
Structural Basis for Translation Termination on a Pseudouridylated Stop Codon
Egor Svidritskiy et al.
JOURNAL OF MOLECULAR BIOLOGY (2016)
Expanding the amino acid repertoire of ribosomal polypeptide synthesis via the artificial division of codon boxes
Yoshihiko Iwane et al.
NATURE CHEMISTRY (2016)
The evolution of Class II Aminoacyl-tRNA synthetases and the first code
Temple F. Smith et al.
FEBS LETTERS (2015)
Codon Bias as a Means to Fine-Tune Gene Expression
Tessa E. F. Quax et al.
MOLECULAR CELL (2015)
Essentiality of threonylcarbamoyladenosine (t6A), a universal tRNA modification, in bacteria
Patrick C. Thiaville et al.
MOLECULAR MICROBIOLOGY (2015)
Genetic code flexibility in microorganisms: novel mechanisms and impact on physiology
Jiqiang Ling et al.
NATURE REVIEWS MICROBIOLOGY (2015)
Structural insights into the role of rRNA modifications in protein synthesis and ribosome assembly
Yury S. Polikanov et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)
A common tRNA modification at an unusual location: the discovery of wyosine biosynthesis in mitochondria
Paul J. Sample et al.
NUCLEIC ACIDS RESEARCH (2015)
Accuracy of initial codon selection by aminoacyl-tRNAs on the mRNA-programmed bacterial ribosome
Jingji Zhang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
O6-Methylguanosine leads to position-dependent effects on ribosome speed and fidelity
Benjamin H. Hudson et al.
RNA (2015)
'View From A Bricge': A New Perspective on Eukaryotic rRNA Base Modification
Sunny Sharma et al.
TRENDS IN BIOCHEMICAL SCIENCES (2015)
Structural insights into the translational infidelity mechanism
Alexey Rozov et al.
NATURE COMMUNICATIONS (2015)
Structural insights into the role of rRNA modifications in protein synthesis and ribosome assembly
Yury S. Polikanov et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)
Recoding the Genetic Code with Selenocysteine
Markus J. Broecker et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2014)
Expanding and Reprogramming the Genetic Code of Cells and Animals
Jason W. Chin
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 83 (2014)
Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA
Schraga Schwartz et al.
CELL (2014)
A complete landscape of post-transcriptional modifications in mammalian mitochondrial tRNAs
Takeo Suzuki et al.
NUCLEIC ACIDS RESEARCH (2014)
Distribution and frequencies of post-transcriptional modifications in tRNAs
Magdalena A. Machnicka et al.
RNA BIOLOGY (2014)
Predicting the Minimal Translation Apparatus: Lessons from the Reductive Evolution of Mollicutes
Henri Grosjean et al.
PLOS GENETICS (2014)
Decoding Mechanism of Non-universal Genetic Codes in Loligo bleekeri Mitochondria
Takayuki Ohira et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2013)
Steric Complementarity in the Decoding Center Is Important for tRNA Selection by the Ribosome
Prashant K. Khade et al.
JOURNAL OF MOLECULAR BIOLOGY (2013)
A Realistic Model Under Which the Genetic Code is Optimal
Harry Buhrman et al.
JOURNAL OF MOLECULAR EVOLUTION (2013)
Unusual base pairing during the decoding of a stop codon by the ribosome
Israel S. Fernandez et al.
NATURE (2013)
MODOMICS: a database of RNA modification pathways-2013 update
Magdalena A. Machnicka et al.
NUCLEIC ACIDS RESEARCH (2013)
Expanded use of sense codons is regulated by modified cytidines in tRNA
William A. Cantara et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
tRNA residues evolved to promote translational accuracy
Irina Shepotinovskaya et al.
RNA (2013)
Thermodynamic contribution and nearest-neighbor parameters of pseudouridine-adenosine base pairs in oligoribonucleotides
Graham A. Hudson et al.
RNA (2013)
The central role of protein S12 in organizing the structure of the decoding site of the ribosome
Hasan Demirci et al.
RNA (2013)
Testing the Nearest Neighbor Model for Canonical RNA Base Pairs: Revision of GU Parameters
Jonathan L. Chen et al.
BIOCHEMISTRY (2012)
A Role for tRNA Modifications in Genome Structure and Codon Usage
Eva Maria Novoa et al.
CELL (2012)
Human tRNALYs3UUU Is Pre-Structured by Natural Modifications for Cognate and Wobble Codon Binding through Keto-Enol Tautomerism
Franck A. P. Vendeix et al.
JOURNAL OF MOLECULAR BIOLOGY (2012)
A new understanding of the decoding principle on the ribosome
Natalia Demeshkina et al.
NATURE (2012)
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
Dan Dominissini et al.
NATURE (2012)
Codon usage bias in prokaryotic pyrimidine-ending codons is associated with the degeneracy of the encoded amino acids
Naama Wald et al.
NUCLEIC ACIDS RESEARCH (2012)
Taurine-containing Uridine Modifications in tRNA Anticodons Are Required to Decipher Non-universal Genetic Codes in Ascidian Mitochondria
Takeo Suzuki et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2011)
Error-Prone and Error-Restrictive Mutations Affecting Ribosomal Protein S12
Deepali Agarwal et al.
JOURNAL OF MOLECULAR BIOLOGY (2011)
Unassigned Codons, Nonsense Suppression, and Anticodon Modifications in the Evolution of the Genetic Code
Peter T. S. van der Gulik et al.
JOURNAL OF MOLECULAR EVOLUTION (2011)
Converting nonsense codons into sense codons by targeted pseudouridylation
John Karijolich et al.
NATURE (2011)
How mutations in tRNA distant from the anticodon affect the fidelity of decoding
T. Martin Schmeing et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2011)
The RNA modification database, RNAMDB: 2011 update
William A. Cantara et al.
NUCLEIC ACIDS RESEARCH (2011)
Evolutionary optimization of speed and accuracy of decoding on the ribosome
Ingo Wohlgemuth et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2011)
tRNA Modification and Genetic Code Variations in Animal Mitochondria
Kimitsuna Watanabe et al.
JOURNAL OF NUCLEIC ACIDS (2011)
Adding New Chemistries to the Genetic Code
Chang C. Liu et al.
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 79 (2010)
tRNA Stabilization by Modified Nucleotides
Yuri Motorin et al.
BIOCHEMISTRY (2010)
Optimization of speed and accuracy of decoding in translation
Ingo Wohlgemuth et al.
EMBO JOURNAL (2010)
Deciphering synonymous codons in the three domains of life: Co-evolution with specific tRNA modification enzymes
Henri Grosjean et al.
FEBS LETTERS (2010)
The Distinction Between Recoding and Codon Reassignment
John F. Atkins et al.
GENETICS (2010)
The Influence of Anticodon-Codon Interactions and Modified Bases on Codon Usage Bias in Bacteria
Wenqi Ran et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
Hyperaccurate and Error-Prone Ribosomes Exploit Distinct Mechanisms during tRNA Selection
Hani S. Zaher et al.
MOLECULAR CELL (2010)
Structural aspects of messenger RNA reading frame maintenance by the ribosome
Lasse B. Jenner et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)
Structural rearrangements of the ribosome at the tRNA proofreading step
Lasse Jenner et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)
RNA-Amino Acid Binding: A Stereochemical Era for the Genetic Code
Michael Yarus et al.
JOURNAL OF MOLECULAR EVOLUTION (2009)
Bases in the anticodon loop of tRNAGGCAla prevent misreading
Hiroshi Murakami et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)
A sequence element that tunes Escherichia coli tRNAGGCAla to ensure accurate decoding
Sarah Ledoux et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)
tRNAdb 2009: compilation of tRNA sequences and tRNA genes
Frank Juehling et al.
NUCLEIC ACIDS RESEARCH (2009)
Unconventional decoding of the AUA codon as methionine by mitochondrial tRNAMet with the anticodon f5CAU as revealed with a mitochondrial in vitro translation system
Chie Takemoto et al.
NUCLEIC ACIDS RESEARCH (2009)
An extension of the coevolution theory of the origin of the genetic code
Massimo Di Giulio
BIOLOGY DIRECT (2008)
Bringing order to translation: the contributions of transfer RNA anticodon-domain modifications
Paul F. Agris
EMBO REPORTS (2008)
Modified uridines with c5-methylene substituents at the first position of the tRNA anticodon stabilize U•G wobble pairing during decoding
Shinya Kurata et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2008)
The role of alternative genetic codes in viral evolution and emergence
Laura A. Shackelton et al.
JOURNAL OF THEORETICAL BIOLOGY (2008)
A unique conformation of the anticodon stem-loop is associated with the capacity of tRNAfMet to initiate protein synthesis
Pierre Barraud et al.
NUCLEIC ACIDS RESEARCH (2008)
Degeneracy of the genetic code and stability of the base pair at the second position of the anticodon
Jean Lehmann et al.
RNA (2008)
The wobble hypothesis revisited:: Uridine-5-oxyacetic acid is critical for reading of G-ending codons
S. Joakim Nasvall et al.
RNA (2007)
Role of a tRNA base modification and its precursors in frameshifting in eukaryotes
William F. Waas et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2007)
tRNA's wobble decoding of the genome: 40 years of modification
Paul F. Agris et al.
JOURNAL OF MOLECULAR BIOLOGY (2007)
An asymmetric underlying rule in the assignment of codons: Possible clue to a quick early evolution of the genetic code via successive binary choices
Marc Delarue
RNA (2007)
Natural expansion of the genetic code
Alexandre Ambrogelly et al.
NATURE CHEMICAL BIOLOGY (2007)
Comparative RNomics and modomics in mollicutes: Prediction of gene function and evolutionary implications
Valerie de Crecy-Lagard et al.
IUBMB LIFE (2007)
Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines
Albert Weixlbaumer et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2007)
Diversity of tRNA genes in eukaryotes
Jeffrey M. Goodenbour et al.
NUCLEIC ACIDS RESEARCH (2006)
Structure of the 70S ribosome complexed with mRNA and tRNA
Maria Selmer et al.
SCIENCE (2006)
tRNA residues that have coevolved with their anticodon to ensure uniform and accurate codon recognition
Mikolaj Olejniczak et al.
BIOCHIMIE (2006)
Collective evolution and the genetic code
Kalin Vetsigian et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Quantitative analysis of deoxynucleotide substitutions in the codon-anticodon helix
RP Fahlman et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
Evolution of the genetic code in yeasts
I Miranda et al.
YEAST (2006)
An active role for tRNA in decoding beyond codon:anticodon pairing
L Cochella et al.
SCIENCE (2005)
Horizontal gene transfer: Perspectives at a crossroads of scientific disciplines
BF Smets et al.
NATURE REVIEWS MICROBIOLOGY (2005)
Reprogrammed genetic decoding in cellular gene expression
O Namy et al.
MOLECULAR CELL (2004)
Aminoacylation of the anticodon stem by a tRNA-synthetase paralog:: relic of an ancient code?
H Grosjean et al.
TRENDS IN BIOCHEMICAL SCIENCES (2004)
Uniform binding of aminoacylated transfer RNAs to the ribosomal A and P sites
RP Fahlman et al.
MOLECULAR CELL (2004)
The role of modifications in codon discrimination by tRNALys UUU
FV Murphy et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2004)
Structure of a purine-purine wobble base pair in the decoding center of the ribosome
FV Murphy et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2004)
Purine bases at position 37 of tRNA stabilize codon-anticodon interaction in the ribosomal A site by stacking and Mg2+-dependent interactions
AL Konevega et al.
RNA (2004)
Amino acid biogenesis, evolution of the genetic code and aminoacyl-tRNA synthetases
L Klipcan et al.
JOURNAL OF THEORETICAL BIOLOGY (2004)
A new classification scheme of the genetic code
T Wilhelm et al.
JOURNAL OF MOLECULAR EVOLUTION (2004)
Codon usage bias from tRNA's point of view: Redundancy, specialization, and efficient decoding for translation optimization
EPC Rocha
GENOME RESEARCH (2004)
The case for an error minimizing standard genetic code
SJ Freeland et al.
ORIGINS OF LIFE AND EVOLUTION OF BIOSPHERES (2003)
tRNAT1Ser(G34)with the anticodon GGA can recognize not only UCC and UCU codons but also UCA and UCG codons
Y Yamada et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION (2003)
Selection of tRNA by the ribosome requires a transition from an open to a closed form
JM Ogle et al.
CELL (2002)
tRNomics: Analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features
C Marck et al.
RNA (2002)
Molecular evolution from abiotic scratch
EN Trifonov et al.
FEBS LETTERS (2002)
Origins of gene, genetic code, protein and life: comprehensive view of life systems from a GNC-SNS primitive genetic code hypothesis
K Ikehara
JOURNAL OF BIOSCIENCES (2002)
Misreading of termination codons in eukaryotes by natural nonsense suppressor tRNAs
H Beier et al.
NUCLEIC ACIDS RESEARCH (2001)
The path of messenger RNA through the ribosome
GZ Yusupova et al.
CELL (2001)
Recognition of cognate transfer RNA by the 30S ribosomal subunit
JM Ogle et al.
SCIENCE (2001)
A universal mode of helix packing in RNA
EA Doherty et al.
NATURE STRUCTURAL BIOLOGY (2001)
An extended structural signature for the tRNA anticodon loop
P Auffinger et al.
RNA (2001)
Molecular evolution: Please release me, genetic code
N Lehman
CURRENT BIOLOGY (2001)
A primordial tRNA modification required for the evolution of life?
GR Björk et al.
EMBO JOURNAL (2001)
Rewiring the keyboard evolvability of the genetic code
RD Knight et al.
NATURE REVIEWS GENETICS (2001)
Consensus temporal order of amino acids and evolution of the triplet code
EN Trifonov
GENE (2000)
Testing a biosynthetic theory of the genetic code: Fact or artifact?
TA Ronneberg et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)
Physico-chemical constraints connected with the coding properties of the genetic system
J Lehmann
JOURNAL OF THEORETICAL BIOLOGY (2000)
Codon usage tabulated from international DNA sequence databases: status for the year 2000
Y Nakamura et al.
NUCLEIC ACIDS RESEARCH (2000)