Related references
Note: Only part of the references are listed.Automated physics-based design of synthetic riboswitches from diverse RNA aptamers
Amin Espah Borujeni et al.
NUCLEIC ACIDS RESEARCH (2016)
Cooperativity, allostery and synergism in ligand binding to riboswitches
Alla Peselis et al.
BIOCHIMIE (2015)
RNA-Based Fluorescent Biosensors for Live Cell Imaging of Second Messenger Cyclic di-AMP
Colleen A. Kellenberger et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2015)
Systematic reconstruction of binding and stability landscapes of the fluorogenic aptamer spinach
Simon Ketterer et al.
NUCLEIC ACIDS RESEARCH (2015)
Imaging metabolite dynamics in living cells using a Spinach-based riboswitch
Mingxu You et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Unexpected versatility in bacterial riboswitches
J. R. Mellin et al.
TRENDS IN GENETICS (2015)
Rapid RNA-ligand interaction analysis through high-information content conformational and stability landscapes
Nathan J. Baird et al.
NATURE COMMUNICATIONS (2015)
Synthetic riboswitches - A tool comes of age
Florian Groher et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2014)
Themes and variations in riboswitch structure and function
Alla Peselis et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2014)
DNA-rescuable allosteric inhibition of aptamer II ligand affinity by aptamer I element in the shortened Vibrio cholerae glycine riboswitch
Eileen M. Sherman et al.
JOURNAL OF BIOCHEMISTRY (2014)
Plug-and-Play Fluorophores Extend the Spectral Properties of Spinach
Wenjiao Song et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2014)
A general design strategy for protein-responsive riboswitches in mammalian cells
Simon Auslaender et al.
NATURE METHODS (2014)
Ligand binding by the tandem glycine riboswitch depends on aptamer dimerization but not double ligand occupancy
Karen M. Ruff et al.
RNA (2014)
RNA-Based Fluorescent Biosensors for Live Cell Imaging of Second Messengers Cyclic di-GMP and Cyclic AMP-GMP
Colleen A. Kellenberger et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2013)
Metabolite Recognition Principles and Molecular Mechanisms Underlying Riboswitch Function
Alexander Serganov et al.
ANNUAL REVIEW OF BIOPHYSICS, VOL 41 (2012)
Patch oligodeoxynucleotide synthesis (POS): a novel method for synthesis of long DNA sequences and full-length genes
Guanghua Yang et al.
BIOTECHNOLOGY LETTERS (2012)
Nanomolar fluorescent detection of c-di-GMP using a modular aptamer strategy
Shizuka Nakayama et al.
CHEMICAL COMMUNICATIONS (2012)
Systematic reconstruction of RNA functional motifs with high-throughput microfluidics
Lance Martin et al.
NATURE METHODS (2012)
A high-throughput, quantitative cell-based screen for efficient tailoring of RNA device activity
Joe C. Liang et al.
NUCLEIC ACIDS RESEARCH (2012)
An energetically beneficial leader-linker interaction abolishes ligand-binding cooperativity in glycine riboswitches
Eileen M. Sherman et al.
RNA (2012)
Fluorescence Imaging of Cellular Metabolites with RNA
Jeremy S. Paige et al.
SCIENCE (2012)
Structural Basis of Cooperative Ligand Binding by the Glycine Riboswitch
Ethan B. Butler et al.
CHEMISTRY & BIOLOGY (2011)
Prospects for Riboswitch Discovery and Analysis
Ronald R. Breaker
MOLECULAR CELL (2011)
Identification of a tertiary interaction important for cooperative ligand binding by the glycine riboswitch
Thanh V. Erion et al.
RNA (2011)
RNA Mimics of Green Fluorescent Protein
Jeremy S. Paige et al.
SCIENCE (2011)
Ribozymes and Riboswitches: Modulation of RNA Function by Small Molecules
Jinwei Zhang et al.
BIOCHEMISTRY (2010)
Structural Insights into Ligand Recognition by a Sensing Domain of the Cooperative Glycine Riboswitch
Lili Huang et al.
MOLECULAR CELL (2010)
Dissecting electrostatic screening, specific ion binding, and ligand binding in an energetic model for glycine riboswitch folding
Jan Lipfert et al.
RNA (2010)
Amino acid recognition and gene regulation by riboswitches
Alexander Serganov et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2009)
The Vienna RNA Websuite
Andreas R. Gruber et al.
NUCLEIC ACIDS RESEARCH (2008)
Chemical basis of glycine riboswitch cooperativity
Miyun Kwon et al.
RNA (2008)
Ligand-induced folding of the thiM TPP riboswitch investigated by a structure-based fluorescence spectroscopic approach
Kathrin Lang et al.
NUCLEIC ACIDS RESEARCH (2007)
Structural transitions and thermodynamics of a glycine-dependent riboswitch from Vibrio cholerae
Jan Lipfert et al.
JOURNAL OF MOLECULAR BIOLOGY (2007)
A systems approach to measuring the binding energy landscapes of transcription factors
Sebastian J. Maerkl et al.
SCIENCE (2007)
Thermodynamic and kinetic characterization of ligand binding to the purine riboswitch aptamer domain
Sunny D. Gilbert et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
The kinetics of ligand binding by an adenine-sensing riboswitch
JK Wickiser et al.
BIOCHEMISTRY (2005)
The speed of RNA transcription and metabolite binding kinetics operate an FMN riboswitch
JK Wickiser et al.
MOLECULAR CELL (2005)
Gene regulation by riboswitches
M Mandal et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2004)
A glycine-dependent riboswitch that uses cooperative binding to control gene expression
M Mandal et al.
SCIENCE (2004)
Genetic control by a metabolite binding mRNA
A Nahvi et al.
CHEMISTRY & BIOLOGY (2002)