Related references
Note: Only part of the references are listed.JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles
Anthony Mathelier et al.
NUCLEIC ACIDS RESEARCH (2016)
Both H4K20 mono-methylation and H3K56 acetylation mark transcription-dependent histone turnover in fission yeast
Hanna Yang et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2016)
Direct GR Binding Sites Potentiate Clusters of TF Binding across the Human Genome
Christopher M. Vockley et al.
CELL (2016)
Comprehensive benchmarking reveals H2BK20 acetylation as a distinctive signature of cell-state-specific enhancers and promoters
Vibhor Kumar et al.
GENOME RESEARCH (2016)
Identification and characterization of DNA sequences that prevent glucocorticoid receptor binding to nearby response elements
Jonas Telorac et al.
NUCLEIC ACIDS RESEARCH (2016)
ChIP-exo signal associated with DNA-binding motifs provides insight into the genomic binding of the glucocorticoid receptor and cooperating transcription factors
Stephan R. Starick et al.
GENOME RESEARCH (2015)
DNA-dependent formation of transcription factor pairs alters their binding specificity
Arttu Jolma et al.
NATURE (2015)
Orchestrating high-throughput genomic analysis with Bioconductor
Wolfgang Huber et al.
NATURE METHODS (2015)
Modeling the relationship of epigenetic modifications to transcription factor binding
Liang Liu et al.
NUCLEIC ACIDS RESEARCH (2015)
Histone-Fold Domain Protein NF-Y Promotes Chromatin Accessibility for Cell Type-Specific Master Transcription Factors
Andrew J. Oldfield et al.
MOLECULAR CELL (2014)
Inference of interactions between chromatin modifiers and histone modifications: from ChIP-Seq data to chromatin-signaling
Juliane Perner et al.
NUCLEIC ACIDS RESEARCH (2014)
Transcription Factor Cooperativity in Early Adipogenic Hotspots and Super-Enhancers
Rasmus Siersbaek et al.
CELL REPORTS (2014)
Distinct and Predictive Histone Lysine Acetylation Patterns at Promoters, Enhancers, and Gene Bodies
Nisha Rajagopal et al.
G3-GENES GENOMES GENETICS (2014)
C/EBP maintains chromatin accessibility in liver and facilitates glucocorticoid receptor recruitment to steroid response elements
Lars Grontved et al.
EMBO JOURNAL (2013)
Distinct Properties of Cell-Type-Specific and Shared Transcription Factor Binding Sites
Jason Gertz et al.
MOLECULAR CELL (2013)
Modification of Enhancer Chromatin: What, How, and Why?
Eliezer Calo et al.
MOLECULAR CELL (2013)
A naturally occuring insertion of a single amino acid rewires transcriptional regulation by glucocorticoid receptor isoforms
Morgane Thomas-Chollier et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Software for Computing and Annotating Genomic Ranges
Michael Lawrence et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
Cell-type specificity of ChIP-predicted transcription factor binding sites
Tony Handstad et al.
BMC GENOMICS (2012)
Predicting cell-type-specific gene expression from regions of open chromatin
Anirudh Natarajan et al.
GENOME RESEARCH (2012)
Sequence and chromatin determinants of cell-type-specific transcription factor binding
Aaron Arvey et al.
GENOME RESEARCH (2012)
The p23 Molecular Chaperone and GCN5 Acetylase Jointly Modulate Protein-DNA Dynamics and Open Chromatin Status
Elena Zelin et al.
MOLECULAR CELL (2012)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Understanding the language of Lys36 methylation at histone H3
Eric J. Wagner et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2012)
Distinct roles of GCN5/PCAF-mediated H3K9ac and CBP/p300-mediated H3K18/27ac in nuclear receptor transactivation
Qihuang Jin et al.
EMBO JOURNAL (2011)
The diverse functions of Dot1 and H3K79 methylation
Anh Tram Nguyen et al.
GENES & DEVELOPMENT (2011)
Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
Roger Pique-Regi et al.
GENOME RESEARCH (2011)
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
Lingyun Song et al.
GENOME RESEARCH (2011)
Chromatin accessibility pre-determines glucocorticoid receptor binding patterns
Sam John et al.
NATURE GENETICS (2011)
Genome-wide analysis of the relationships between DNaseI HS, histone modifications and gene expression reveals distinct modes of chromatin domains
Wenjie Shu et al.
NUCLEIC ACIDS RESEARCH (2011)
The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding
Xiao-Yong Li et al.
GENOME BIOLOGY (2011)
The NIH Roadmap Epigenomics Mapping Consortium
Bradley E. Bernstein et al.
NATURE BIOTECHNOLOGY (2010)
Transcriptional Regulation of Human Dual Specificity Protein Phosphatase 1 (DUSP1) Gene by Glucocorticoids
Lauren E. Shipp et al.
PLOS ONE (2010)
Kinetic Complexity of the Global Response to Glucocorticoid Receptor Action
Sam John et al.
ENDOCRINOLOGY (2009)
Circadian rhythm transcription factor CLOCK regulates the transcriptional activity of the glucocorticoid receptor by acetylating its hinge region lysine cluster: potential physiological implications
Nancy Nader et al.
FASEB JOURNAL (2009)
Interaction of the glucocorticoid receptor with the chromatin landscape
Sam John et al.
MOLECULAR CELL (2008)
Combinatorial patterns of histone acetylations and methylations in the human genome
Zhibin Wang et al.
NATURE GENETICS (2008)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
Nathaniel D. Heintzman et al.
NATURE GENETICS (2007)
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis
S Durinck et al.
BIOINFORMATICS (2005)
JASPAR: an open-access database for eukaryotic transcription factor binding profiles
A Sandelin et al.
NUCLEIC ACIDS RESEARCH (2004)