4.8 Article

The target spectrum of SdsR small RNA in Salmonella

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Diverse mechanisms of post-transcriptional repression by the small RNA regulator of glucose-phosphate stress

Maksym Bobrovskyy et al.

MOLECULAR MICROBIOLOGY (2016)

Article Biochemistry & Molecular Biology

A 3′ UTR-Derived Small RNA Provides the Regulatory Noncoding Arm of the Inner Membrane Stress Response

Yanjie Chao et al.

MOLECULAR CELL (2016)

Review Biochemistry & Molecular Biology

Interplay of regulatory RNAs and mobile genetic elements in enteric pathogens

Kathrin S. Froehlich et al.

MOLECULAR MICROBIOLOGY (2016)

Article Multidisciplinary Sciences

Dual RNA-seq unveils noncoding RNA functions in host-pathogen interactions

Alexander J. Westermann et al.

NATURE (2016)

Article Biochemistry & Molecular Biology

Protection against deleterious nitrogen compounds: role of σS-dependent small RNAs encoded adjacent to sdiA

Yue Hao et al.

NUCLEIC ACIDS RESEARCH (2016)

Review Genetics & Heredity

Accelerating Discovery and Functional Analysis of Small RNAs with New Technologies

Lars Barquist et al.

ANNUAL REVIEW OF GENETICS, VOL 49 (2015)

Review Biochemistry & Molecular Biology

Cross talk between ABC transporter mRNAs via a target mRNA-derived sponge of the GcvB small RNA

Masatoshi Miyakoshi et al.

EMBO JOURNAL (2015)

Article Infectious Diseases

Systematic analysis of the role of bacterial Hfq-interacting sRNAs in the response to antibiotics

Taeyeon Kim et al.

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2015)

Article Biochemistry & Molecular Biology

Identification of bacterial sRNA regulatory targets using ribosome profiling

Jing Wang et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Multidisciplinary Sciences

Differential RNA-seq of Vibrio cholerae identifies the VqmR small RNA as a regulator of biofilm formation

Kai Papenfort et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Multidisciplinary Sciences

Small RNA-based feedforward loop with AND-gate logic regulates extrachromosomal DNA transfer in Salmonella

Kai Papenfort et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Review Biochemistry & Molecular Biology

An assessment of bacterial small RNA target prediction programs

Adrien Pain et al.

RNA BIOLOGY (2015)

Review Biotechnology & Applied Microbiology

Regulated Control of the Assembly and Diversity of LPS by Noncoding sRNAs

Gracjana Klein et al.

BIOMED RESEARCH INTERNATIONAL (2015)

Review Microbiology

How do base-pairing small RNAs evolve?

Taylor B. Updegrove et al.

FEMS MICROBIOLOGY REVIEWS (2015)

Review Microbiology

Target activation by regulatory RNAs in bacteria

Kai Papenfort et al.

FEMS MICROBIOLOGY REVIEWS (2015)

Article Biochemistry & Molecular Biology

Identification of Bacteriophage-Encoded Anti-sRNAs in Pathogenic Escherichia coli

Jai J. Tree et al.

MOLECULAR CELL (2014)

Article Multidisciplinary Sciences

Structure of the AcrAB-TolC multidrug efflux pump

Dijun Du et al.

NATURE (2014)

Article Biochemistry & Molecular Biology

TargetRNA2: identifying targets of small regulatory RNAs in bacteria

Mary Beth Kery et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

Revisiting the coding potential of the E. coli genome through Hfq co-immunoprecipitation

Ivana Bilusic et al.

RNA BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Evolutionary patterns of Escherichia coli small RNAs and their regulatory interactions

Asaf Peer et al.

Review Biochemistry & Molecular Biology

Planting the seed: target recognition of short guide RNAs

Tim Kunne et al.

TRENDS IN MICROBIOLOGY (2014)

Review Biochemistry & Molecular Biology

Regulatory RNAS and target mRNA decay in prokaryotes

David Lalaouna et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2013)

Article Biochemistry & Molecular Biology

Small RNA-Mediated Activation of Sugar Phosphatase mRNA Regulates Glucose Homeostasis

Kai Papenfort et al.

Article Biochemistry & Molecular Biology

A small RNA activates CFA synthase by isoform-specific mRNA stabilization

Kathrin Sophie Froehlich et al.

EMBO JOURNAL (2013)

Review Biochemistry & Molecular Biology

Bacterial Small RNA-based Negative Regulation: Hfq and Its Accomplices

Nicholas De Lay et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2013)

Article Biochemistry & Molecular Biology

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more

Heladia Salgado et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

EcoCyc: fusing model organism databases with systems biology

Ingrid M. Keseler et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Multidisciplinary Sciences

Comparative genomics boosts target prediction for bacterial small RNAs

Patrick R. Wright et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Biochemistry & Molecular Biology

An RpoS-dependent sRNA regulates the expression of a chaperone involved in protein folding

Ines Jesus Silva et al.

Article Multidisciplinary Sciences

β-lactam antibiotics promote bacterial mutagenesis via an RpoS-mediated reduction in replication fidelity

A. Gutierrez et al.

NATURE COMMUNICATIONS (2013)

Review Microbiology

The bacterial protein Hfq: much more than a mere RNA-binding factor

Patricio Sobrero et al.

CRITICAL REVIEWS IN MICROBIOLOGY (2012)

Article Biochemistry & Molecular Biology

Multiple factors dictate target selection by Hfq-binding small RNAs

Chase L. Beisel et al.

EMBO JOURNAL (2012)

Article Biochemistry & Molecular Biology

An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs

Yanjie Chao et al.

EMBO JOURNAL (2012)

Article Biochemistry & Molecular Biology

The Seed Region of a Small RNA Drives the Controlled Destruction of the Target mRNA by the Endoribonuclease RNase E

Katarzyna J. Bandyra et al.

MOLECULAR CELL (2012)

Article Biochemistry & Molecular Biology

Superfolder GFP reporters validate diverse new mRNA targets of the classic porin regulator, MicF RNA

Colin P. Corcoran et al.

MOLECULAR MICROBIOLOGY (2012)

Article Biochemistry & Molecular Biology

A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD

Kathrin S. Froehlich et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Multidisciplinary Sciences

The ancestral SgrS RNA discriminates horizontally acquired Salmonella mRNAs through a single G-U wobble pair

Kai Papenfort et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium

Carsten Kroeger et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Review Biochemistry & Molecular Biology

Molecular call and response: The physiology of bacterial small RNAs

Gregory R. Richards et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2011)

Review Biochemistry & Molecular Biology

Transient RNA-protein interactions in RNA folding

Martina Doetsch et al.

FEBS JOURNAL (2011)

Review Biochemistry & Molecular Biology

Regulation by Small RNAs in Bacteria: Expanding Frontiers

Gisela Storz et al.

MOLECULAR CELL (2011)

Article Biochemistry & Molecular Biology

Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA

Cynthia M. Sharma et al.

MOLECULAR MICROBIOLOGY (2011)

Review Microbiology

Hfq and its constellation of RNA

Joerg Vogel et al.

NATURE REVIEWS MICROBIOLOGY (2011)

Article Biochemistry & Molecular Biology

RNApredator: fast accessibility-based prediction of sRNA targets

Florian Eggenhofer et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Multidisciplinary Sciences

Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon

Emily B. Gogol et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Editorial Material Biochemistry & Molecular Biology

Discriminating tastes Physiological contributions of the Hfq-binding small RNA Spot 42 to catabolite repression

Chase L. Beisel et al.

RNA BIOLOGY (2011)

Review Microbiology

The role of Hfq in bacterial pathogens

Yanjie Chao et al.

CURRENT OPINION IN MICROBIOLOGY (2010)

Article Biochemistry & Molecular Biology

Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis

Erik Holmqvist et al.

EMBO JOURNAL (2010)

Article Biochemistry & Molecular Biology

Turn-over of the small non-coding RNA RprA in E. coli is influenced by osmolarity

Ramakanth Madhugiri et al.

MOLECULAR GENETICS AND GENOMICS (2010)

Article Biochemistry & Molecular Biology

Reprogramming of anaerobic metabolism by the FnrS small RNA

Sylvain Durand et al.

MOLECULAR MICROBIOLOGY (2010)

Article Multidisciplinary Sciences

Evidence for an autonomous 5′ target recognition domain in an Hfq-associated small RNA

Kai Papenfort et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Review Microbiology

Base pairing small RNAs and their roles in global regulatory networks

Chase L. Beisel et al.

FEMS MICROBIOLOGY REVIEWS (2010)

Review Biochemistry & Molecular Biology

Regulatory RNAs in Bacteria

Lauren S. Waters et al.

Article Biochemistry & Molecular Biology

The H-NS-like protein StpA represses the RpoS (σ38) regulon during exponential growth of Salmonella Typhimurium

Sacha Lucchini et al.

MOLECULAR MICROBIOLOGY (2009)

Review Biochemistry & Molecular Biology

Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA

Kai Papenfort et al.

MOLECULAR MICROBIOLOGY (2009)

Article Biochemistry & Molecular Biology

Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation

Verena Pfeiffer et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Down-regulation of Outer Membrane Proteins by Noncoding RNAs: Unraveling the cAMP-CRP- and σE-Dependent CyaR-ompX Regulatory Case

Jesper Johansen et al.

JOURNAL OF MOLECULAR BIOLOGY (2008)

Review Microbiology

Carbon catabolite repression in bacteria:: many ways to make the most out of nutrients

Boris Goerke et al.

NATURE REVIEWS MICROBIOLOGY (2008)

Article Biochemistry & Molecular Biology

The 5 end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator

Maude Guillier et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

Translational control and target recognition by Escherichia coli small RNAs in vivo

Johannes H. Urban et al.

NUCLEIC ACIDS RESEARCH (2007)

Review Biochemistry & Molecular Biology

The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium

Alexandra Sittka et al.

MOLECULAR MICROBIOLOGY (2007)

Article Biochemistry & Molecular Biology

σE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay

Kai Papenfort et al.

MOLECULAR MICROBIOLOGY (2006)

Article Biochemistry & Molecular Biology

Remodelling of the Escherichia coli outer membrane by two small regulatory RNAs

M Guillier et al.

MOLECULAR MICROBIOLOGY (2006)

Article Microbiology

GadY, a small-RNA regulator of acid response genes in Escherichia coli

JA Opdyke et al.

JOURNAL OF BACTERIOLOGY (2004)

Article Biochemistry & Molecular Biology

RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria

J Vogel et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Microbiology

Global regulation of the Salmonella enterica serovar Typhimurium major porin, OmpD

CA Santiviago et al.

JOURNAL OF BACTERIOLOGY (2003)

Review Microbiology

Identifying global regulators in transcriptional regulatory networks in bacteria

A Martínez-Antonio et al.

CURRENT OPINION IN MICROBIOLOGY (2003)

Article Biochemistry & Molecular Biology

Global analysis of small RNA and mRNA targets of Hfq

AX Zhang et al.

MOLECULAR MICROBIOLOGY (2003)

Article Cell Biology

Spot 42 RNA mediates discoordinate expression of the E-coli galactose operon

T Moller et al.

GENES & DEVELOPMENT (2002)

Article Multidisciplinary Sciences

Epitope tagging of chromosomal genes in Salmonella

S Uzzau et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)

Article Biochemistry & Molecular Biology

Novel small RNA-encoding genes in the intergenic regions of Escherichia coli

L Argaman et al.

CURRENT BIOLOGY (2001)