Related references
Note: Only part of the references are listed.Diverse mechanisms of post-transcriptional repression by the small RNA regulator of glucose-phosphate stress
Maksym Bobrovskyy et al.
MOLECULAR MICROBIOLOGY (2016)
Global RNA recognition patterns of post-transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo
Erik Holmqvist et al.
EMBO JOURNAL (2016)
Small RNA Regulation of TolC, the Outer Membrane Component of Bacterial Multidrug Transporters
Ashley Parker et al.
JOURNAL OF BACTERIOLOGY (2016)
A 3′ UTR-Derived Small RNA Provides the Regulatory Noncoding Arm of the Inner Membrane Stress Response
Yanjie Chao et al.
MOLECULAR CELL (2016)
Interplay of regulatory RNAs and mobile genetic elements in enteric pathogens
Kathrin S. Froehlich et al.
MOLECULAR MICROBIOLOGY (2016)
Dual RNA-seq unveils noncoding RNA functions in host-pathogen interactions
Alexander J. Westermann et al.
NATURE (2016)
Protection against deleterious nitrogen compounds: role of σS-dependent small RNAs encoded adjacent to sdiA
Yue Hao et al.
NUCLEIC ACIDS RESEARCH (2016)
Accelerating Discovery and Functional Analysis of Small RNAs with New Technologies
Lars Barquist et al.
ANNUAL REVIEW OF GENETICS, VOL 49 (2015)
A Qrr Noncoding RNA Deploys Four Different Regulatory Mechanisms to Optimize Quorum-Sensing Dynamics
Lihui Feng et al.
CELL (2015)
Cross talk between ABC transporter mRNAs via a target mRNA-derived sponge of the GcvB small RNA
Masatoshi Miyakoshi et al.
EMBO JOURNAL (2015)
Systematic analysis of the role of bacterial Hfq-interacting sRNAs in the response to antibiotics
Taeyeon Kim et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2015)
Identification of bacterial sRNA regulatory targets using ribosome profiling
Jing Wang et al.
NUCLEIC ACIDS RESEARCH (2015)
Differential RNA-seq of Vibrio cholerae identifies the VqmR small RNA as a regulator of biofilm formation
Kai Papenfort et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Small RNA-based feedforward loop with AND-gate logic regulates extrachromosomal DNA transfer in Salmonella
Kai Papenfort et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
An assessment of bacterial small RNA target prediction programs
Adrien Pain et al.
RNA BIOLOGY (2015)
Characterization of the Escherichia coli σS core regulon by Chromatin Immunoprecipitation-sequencing (ChIP-seq) analysis
Clelia Peano et al.
SCIENTIFIC REPORTS (2015)
RNA-seq Brings New Insights to the Intra-Macrophage Transcriptome of Salmonella Typhimurium
Shabarinath Srikumar et al.
PLOS PATHOGENS (2015)
Regulated Control of the Assembly and Diversity of LPS by Noncoding sRNAs
Gracjana Klein et al.
BIOMED RESEARCH INTERNATIONAL (2015)
Effect of Global Regulators RpoS and Cyclic-AMP/CRP on the Catabolome and Transcriptome of Escherichia coli K12 during Carbon- and Energy-Limited Growth
Alessandro G. Franchini et al.
PLOS ONE (2015)
How do base-pairing small RNAs evolve?
Taylor B. Updegrove et al.
FEMS MICROBIOLOGY REVIEWS (2015)
Target activation by regulatory RNAs in bacteria
Kai Papenfort et al.
FEMS MICROBIOLOGY REVIEWS (2015)
Small RNAs, 5′ UTR elements and RNA-binding proteins in intracellular bacteria: impact on metabolism and virulence
Giulia Oliva et al.
FEMS MICROBIOLOGY REVIEWS (2015)
MicL, a new σE-dependent sRNA, combats envelope stress by repressing synthesis of Lpp, the major outer membrane lipoprotein
Monica S. Guo et al.
GENES & DEVELOPMENT (2014)
Identification of Bacteriophage-Encoded Anti-sRNAs in Pathogenic Escherichia coli
Jai J. Tree et al.
MOLECULAR CELL (2014)
Structure of the AcrAB-TolC multidrug efflux pump
Dijun Du et al.
NATURE (2014)
TargetRNA2: identifying targets of small regulatory RNAs in bacteria
Mary Beth Kery et al.
NUCLEIC ACIDS RESEARCH (2014)
Expanding the RpoS/σS-Network by RNA Sequencing and Identification of σS-Controlled Small RNAs in Salmonella
Corinne Levi-Meyrueis et al.
PLOS ONE (2014)
Revisiting the coding potential of the E. coli genome through Hfq co-immunoprecipitation
Ivana Bilusic et al.
RNA BIOLOGY (2014)
Evolutionary patterns of Escherichia coli small RNAs and their regulatory interactions
Asaf Peer et al.
RNA (2014)
Planting the seed: target recognition of short guide RNAs
Tim Kunne et al.
TRENDS IN MICROBIOLOGY (2014)
Regulatory RNAS and target mRNA decay in prokaryotes
David Lalaouna et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2013)
Small RNA-Mediated Activation of Sugar Phosphatase mRNA Regulates Glucose Homeostasis
Kai Papenfort et al.
CELL (2013)
A small RNA activates CFA synthase by isoform-specific mRNA stabilization
Kathrin Sophie Froehlich et al.
EMBO JOURNAL (2013)
Bacterial Small RNA-based Negative Regulation: Hfq and Its Accomplices
Nicholas De Lay et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2013)
RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more
Heladia Salgado et al.
NUCLEIC ACIDS RESEARCH (2013)
EcoCyc: fusing model organism databases with systems biology
Ingrid M. Keseler et al.
NUCLEIC ACIDS RESEARCH (2013)
Comparative genomics boosts target prediction for bacterial small RNAs
Patrick R. Wright et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
An RpoS-dependent sRNA regulates the expression of a chaperone involved in protein folding
Ines Jesus Silva et al.
RNA (2013)
β-lactam antibiotics promote bacterial mutagenesis via an RpoS-mediated reduction in replication fidelity
A. Gutierrez et al.
NATURE COMMUNICATIONS (2013)
Post-Transcriptional Control of the Escherichia coli PhoQ-PhoP Two-Component System by Multiple sRNAs Involves a Novel Pairing Region of GcvB
Audrey Coornaert et al.
PLOS GENETICS (2013)
The bacterial protein Hfq: much more than a mere RNA-binding factor
Patricio Sobrero et al.
CRITICAL REVIEWS IN MICROBIOLOGY (2012)
Multiple factors dictate target selection by Hfq-binding small RNAs
Chase L. Beisel et al.
EMBO JOURNAL (2012)
An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs
Yanjie Chao et al.
EMBO JOURNAL (2012)
Noncanonical repression of translation initiation through small RNA recruitment of the RNA chaperone Hfq
Guillaume Desnoyers et al.
GENES & DEVELOPMENT (2012)
The Seed Region of a Small RNA Drives the Controlled Destruction of the Target mRNA by the Endoribonuclease RNase E
Katarzyna J. Bandyra et al.
MOLECULAR CELL (2012)
Superfolder GFP reporters validate diverse new mRNA targets of the classic porin regulator, MicF RNA
Colin P. Corcoran et al.
MOLECULAR MICROBIOLOGY (2012)
A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD
Kathrin S. Froehlich et al.
NUCLEIC ACIDS RESEARCH (2012)
The ancestral SgrS RNA discriminates horizontally acquired Salmonella mRNAs through a single G-U wobble pair
Kai Papenfort et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium
Carsten Kroeger et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Hfq and Hfq-dependent small RNAs are major contributors to multicellular development in Salmonella enterica serovar typhimurium
Claudia Monteiro et al.
RNA BIOLOGY (2012)
Regulating iron storage and metabolism with RNA: an overview of posttranscriptional controls of intracellular iron homeostasis
Hubert Salvail et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2012)
Molecular call and response: The physiology of bacterial small RNAs
Gregory R. Richards et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2011)
Transient RNA-protein interactions in RNA folding
Martina Doetsch et al.
FEBS JOURNAL (2011)
Accessibility and Evolutionary Conservation Mark Bacterial Small-RNA Target-Binding Regions
Asaf Peer et al.
JOURNAL OF BACTERIOLOGY (2011)
Regulation by Small RNAs in Bacteria: Expanding Frontiers
Gisela Storz et al.
MOLECULAR CELL (2011)
Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA
Cynthia M. Sharma et al.
MOLECULAR MICROBIOLOGY (2011)
Hfq and its constellation of RNA
Joerg Vogel et al.
NATURE REVIEWS MICROBIOLOGY (2011)
In vitro transcription profiling of the ΣS subunit of bacterial RNA polymerase: re-definition of the ΣS regulon and identification of ΣS-specific promoter sequence elements
Anna Maciag et al.
NUCLEIC ACIDS RESEARCH (2011)
RNApredator: fast accessibility-based prediction of sRNA targets
Florian Eggenhofer et al.
NUCLEIC ACIDS RESEARCH (2011)
Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon
Emily B. Gogol et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Discriminating tastes Physiological contributions of the Hfq-binding small RNA Spot 42 to catabolite repression
Chase L. Beisel et al.
RNA BIOLOGY (2011)
The role of Hfq in bacterial pathogens
Yanjie Chao et al.
CURRENT OPINION IN MICROBIOLOGY (2010)
Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis
Erik Holmqvist et al.
EMBO JOURNAL (2010)
Turn-over of the small non-coding RNA RprA in E. coli is influenced by osmolarity
Ramakanth Madhugiri et al.
MOLECULAR GENETICS AND GENOMICS (2010)
Reprogramming of anaerobic metabolism by the FnrS small RNA
Sylvain Durand et al.
MOLECULAR MICROBIOLOGY (2010)
Evidence for an autonomous 5′ target recognition domain in an Hfq-associated small RNA
Kai Papenfort et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Base pairing small RNAs and their roles in global regulatory networks
Chase L. Beisel et al.
FEMS MICROBIOLOGY REVIEWS (2010)
Regulatory RNAs in Bacteria
Lauren S. Waters et al.
CELL (2009)
Caught at its own game: regulatory small RNA inactivated by an inducible transcript mimicking its target
Nara Figueroa-Bossi et al.
GENES & DEVELOPMENT (2009)
The Crp-Activated Small Noncoding Regulatory RNA CyaR (RyeE) Links Nutritional Status to Group Behavior
Nicholas De Lay et al.
JOURNAL OF BACTERIOLOGY (2009)
The H-NS-like protein StpA represses the RpoS (σ38) regulon during exponential growth of Salmonella Typhimurium
Sacha Lucchini et al.
MOLECULAR MICROBIOLOGY (2009)
Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA
Kai Papenfort et al.
MOLECULAR MICROBIOLOGY (2009)
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation
Verena Pfeiffer et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)
Global Systems-Level Analysis of Hfq and SmpB Deletion Mutants in Salmonella: Implications for Virulence and Global Protein Translation
Charles Ansong et al.
PLOS ONE (2009)
Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional level
Kai Papenfort et al.
RESEARCH IN MICROBIOLOGY (2009)
IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions
Anke Busch et al.
BIOINFORMATICS (2008)
Down-regulation of Outer Membrane Proteins by Noncoding RNAs: Unraveling the cAMP-CRP- and σE-Dependent CyaR-ompX Regulatory Case
Jesper Johansen et al.
JOURNAL OF MOLECULAR BIOLOGY (2008)
Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesis
Kai Papenfort et al.
MOLECULAR MICROBIOLOGY (2008)
Carbon catabolite repression in bacteria:: many ways to make the most out of nutrients
Boris Goerke et al.
NATURE REVIEWS MICROBIOLOGY (2008)
The 5 end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator
Maude Guillier et al.
NUCLEIC ACIDS RESEARCH (2008)
Deep Sequencing Analysis of Small Noncoding RNA and mRNA Targets of the Global Post-Transcriptional Regulator, Hfq
Alexandra Sittka et al.
PLOS GENETICS (2008)
A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome
Verena Pfeiffer et al.
MOLECULAR MICROBIOLOGY (2007)
Hfq modulates the σE-mediated envelope stress response and the σ32-mediated cytoplasmic stress response in Escherichia coli
Eric Guisbert et al.
JOURNAL OF BACTERIOLOGY (2007)
Translational control and target recognition by Escherichia coli small RNAs in vivo
Johannes H. Urban et al.
NUCLEIC ACIDS RESEARCH (2007)
The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium
Alexandra Sittka et al.
MOLECULAR MICROBIOLOGY (2007)
σE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay
Kai Papenfort et al.
MOLECULAR MICROBIOLOGY (2006)
Remodelling of the Escherichia coli outer membrane by two small regulatory RNAs
M Guillier et al.
MOLECULAR MICROBIOLOGY (2006)
GadY, a small-RNA regulator of acid response genes in Escherichia coli
JA Opdyke et al.
JOURNAL OF BACTERIOLOGY (2004)
RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria
J Vogel et al.
NUCLEIC ACIDS RESEARCH (2003)
Global regulation of the Salmonella enterica serovar Typhimurium major porin, OmpD
CA Santiviago et al.
JOURNAL OF BACTERIOLOGY (2003)
Identifying global regulators in transcriptional regulatory networks in bacteria
A Martínez-Antonio et al.
CURRENT OPINION IN MICROBIOLOGY (2003)
Global analysis of small RNA and mRNA targets of Hfq
AX Zhang et al.
MOLECULAR MICROBIOLOGY (2003)
Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs
I Moll et al.
RNA (2003)
Spot 42 RNA mediates discoordinate expression of the E-coli galactose operon
T Moller et al.
GENES & DEVELOPMENT (2002)
Epitope tagging of chromosomal genes in Salmonella
S Uzzau et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Novel small RNA-encoding genes in the intergenic regions of Escherichia coli
L Argaman et al.
CURRENT BIOLOGY (2001)
Nucleoid proteins stimulate stringently controlled bacterial promoters:: A link between the cAMP-CRP and the (p)ppGpp regulons in Escherichia coli
J Johansson et al.
CELL (2000)