4.6 Review

Plant metabolic clusters - from genetics to genomics

Journal

NEW PHYTOLOGIST
Volume 211, Issue 3, Pages 771-789

Publisher

WILEY
DOI: 10.1111/nph.13981

Keywords

biosynthetic gene clusters; chromatin; genome mining; natural products; operons

Categories

Funding

  1. UK Biotechnological and Biological Sciences Research Council (BBSRC) Institute Strategic Programme Grant 'Understanding and Exploiting Plant and Microbial Metabolism' [BB/J004561/1]
  2. John Innes Foundation
  3. Engineering and Physical Sciences Research Council/ BBSRC [BB/L014130/1]
  4. National Institutes of Health Genome to Natural Products Network [U101GM110699]
  5. BBSRC [BB/L014130/1, BB/M028860/1, BBS/E/J/000CA533, BBS/E/J/000CA527, BB/M028712/1] Funding Source: UKRI
  6. Biotechnology and Biological Sciences Research Council [BBS/E/J/000CA533, BB/M028860/1, BBS/E/J/00000614, BBS/E/J/000CA527, BB/L014130/1, BB/M028712/1] Funding Source: researchfish

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Plant natural products are of great value for agriculture, medicine and a wide range of other industrial applications. The discovery of new plant natural product pathways is currently being revolutionized by two key developments. First, breakthroughs in sequencing technology and reduced cost of sequencing are accelerating the ability to find enzymes and pathways for the biosynthesis of new natural products by identifying the underlying genes. Second, there are now multiple examples in which the genes encoding certain natural product pathways have been found to be grouped together in biosynthetic gene clusters within plant genomes. These advances are now making it possible to develop strategies for systematically mining multiple plant genomes for the discovery of new enzymes, pathways and chemistries. Increased knowledge of the features of plant metabolic gene clusters - architecture, regulation and assembly - will be instrumental in expediting natural product discovery. This review summarizes progress in this area.

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