Related references
Note: Only part of the references are listed.POPHELPER: an R package and web app to analyse and visualize population structure
R. M. Francis
MOLECULAR ECOLOGY RESOURCES (2017)
Using Populus as a lignocellulosic feedstock for bioethanol
Ilga Porth et al.
BIOTECHNOLOGY JOURNAL (2015)
High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus
Wellington Muchero et al.
BMC GENOMICS (2015)
From association to prediction: statistical methods for the dissection and selection of complex traits in plants
Alexander E. Lipka et al.
CURRENT OPINION IN PLANT BIOLOGY (2015)
Comparative interrogation of the developing xylem transcriptomes of two wood-forming species: Populus trichocarpa and Eucalyptus grandis
Charles A. Hefer et al.
NEW PHYTOLOGIST (2015)
Using Populus as a lignocellulosic feedstock for bioethanol
Ilga Porth et al.
BIOTECHNOLOGY JOURNAL (2015)
Consensus Genotyper for Exome Sequencing (CGES): improving the quality of exome variant genotypes
Vassily Trubetskoy et al.
BIOINFORMATICS (2015)
Rare-Variant Association Analysis: Study Designs and Statistical Tests
Seunggeung Lee et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2014)
Natural Variations and Genome-Wide Association Studies in Crop Plants
Xuehui Huang et al.
ANNUAL REVIEW OF PLANT BIOLOGY, VOL 65 (2014)
Evaluation of variant identification methods for whole genome sequencing data in dairy cattle
Christine F. Baes et al.
BMC GENOMICS (2014)
Geographical and environmental gradients shape phenotypic trait variation and genetic structure in Populus trichocarpa
Athena D. McKown et al.
NEW PHYTOLOGIST (2014)
PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R
Bastian Pfeifer et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Exome resequencing reveals signatures of demographic and adaptive processes across the genome and range of black cottonwood Populus trichocarpa
L. Zhou et al.
MOLECULAR ECOLOGY (2014)
Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls
Justin M. Zook et al.
NATURE BIOTECHNOLOGY (2014)
Population genomics of Populus trichocarpa identifies signatures of selection and adaptive trait associations
Luke M. Evans et al.
NATURE GENETICS (2014)
Genome-wide association implicates numerous genes underlying ecological trait variation in natural populations of Populus trichocarpa
Athena D. McKown et al.
NEW PHYTOLOGIST (2014)
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
Wan-Ping Lee et al.
PLOS ONE (2014)
Interactions between chromosomal and nonchromosomal elements reveal missing heritability
Matthew D. Edwards et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Explaining additional genetic variation in complex traits
Matthew R. Robinson et al.
TRENDS IN GENETICS (2014)
Genomic selection in crops, trees and forages: a review
Z. Lin et al.
CROP & PASTURE SCIENCE (2014)
Sequence Kernel Association Tests for the Combined Effect of Rare and Common Variants
Iuliana Ionita-Laza et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2013)
Integrating genomic selection into dairy cattle breeding programmes: a review
A. Bouquet et al.
ANIMAL (2013)
Quantifying single nucleotide variant detection sensitivity in exome sequencing
Alison M. Meynert et al.
BMC BIOINFORMATICS (2013)
Breeding with rare defective alleles (BRDA): a natural Populus nigra HCT mutant with modified lignin as a case study
Bartel Vanholme et al.
NEW PHYTOLOGIST (2013)
Network analysis reveals the relationship among wood properties, gene expression levels and genotypes of natural Populus trichocarpa accessions
Ilga Porth et al.
NEW PHYTOLOGIST (2013)
Genome-wide association mapping for wood characteristics in Populus identifies an array of candidate single nucleotide polymorphisms
Ilga Porth et al.
NEW PHYTOLOGIST (2013)
Association genetics of chemical wood properties in black poplar (Populus nigra)
Fernando P. Guerra et al.
NEW PHYTOLOGIST (2013)
Optimal Unified Approach for Rare-Variant Association Testing with Application to Small-Sample Case-Control Whole-Exome Sequencing Studies
Seunggeun Lee et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2012)
A high-performance computing toolset for relatedness and principal component analysis of SNP data
Xiuwen Zheng et al.
BIOINFORMATICS (2012)
Targeted enrichment of the black cottonwood (Populus trichocarpa) gene space using sequence capture
Lecong Zhou et al.
BMC GENOMICS (2012)
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
Pablo Cingolani et al.
FLY (2012)
Rare and common variants: twenty arguments
Greg Gibson
NATURE REVIEWS GENETICS (2012)
STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method
Dent A. Earl et al.
CONSERVATION GENETICS RESOURCES (2012)
Population Structure of Hispanics in the United States: The Multi-Ethnic Study of Atherosclerosis
Ani Manichaikul et al.
PLOS GENETICS (2012)
Rare-Variant Association Testing for Sequencing Data with the Sequence Kernel Association Test
Michael C. Wu et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2011)
The variant call format and VCFtools
Petr Danecek et al.
BIOINFORMATICS (2011)
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
Heng Li
BIOINFORMATICS (2011)
A framework for variation discovery and genotyping using next-generation DNA sequencing data
Mark A. DePristo et al.
NATURE GENETICS (2011)
Nucleotide diversity and linkage disequilibrium in Populus nigra cinnamyl alcohol dehydrogenase (CAD4) gene
Fabio Marroni et al.
TREE GENETICS & GENOMES (2011)
Genome-wide association studies in plants: the missing heritability is in the field
Benjamin Brachi et al.
GENOME BIOLOGY (2011)
Poplar as a feedstock for biofuels: A review of compositional characteristics
Poulomi Sannigrahi et al.
BIOFUELS BIOPRODUCTS & BIOREFINING-BIOFPR (2010)
Robust relationship inference in genome-wide association studies
Ani Manichaikul et al.
BIOINFORMATICS (2010)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
Common SNPs explain a large proportion of the heritability for human height
Jian Yang et al.
NATURE GENETICS (2010)
Association genetics of traits controlling lignin and cellulose biosynthesis in black cottonwood (Populus trichocarpa, Salicaceae) secondary xylem
Jill L. Wegrzyn et al.
NEW PHYTOLOGIST (2010)
The origin and evolution of lignin biosynthesis
Jing-Ke Weng et al.
NEW PHYTOLOGIST (2010)
Protein structure prediction on the Web: a case study using the Phyre server
Lawrence A. Kelley et al.
NATURE PROTOCOLS (2009)
The Populus Genome Integrative Explorer (PopGenIE): a new resource for exploring the Populus genome
Andreas Sjodin et al.
NEW PHYTOLOGIST (2009)
Quantitative genetic analysis of biomass and wood chemistry of Populus under different nitrogen levels
Evandro Novaes et al.
NEW PHYTOLOGIST (2009)
Methods for detecting associations with rare variants for common diseases: Application to analysis of sequence data
Bingshan Li et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2008)
Accurate whole human genome sequencing using reversible terminator chemistry
David R. Bentley et al.
NATURE (2008)
Comparative analysis of the transcriptomes of Populus trichocarpa and Arabidopsis thaliana suggests extensive evolution of gene expression regulation in angiosperms
Tania Quesada et al.
NEW PHYTOLOGIST (2008)
PLINK: A tool set for whole-genome association and population-based linkage analyses
Shaun Purcell et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2007)
CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
Mattias Jakobsson et al.
BIOINFORMATICS (2007)
snp.plotter: an R-based SNP/haplotype association and linkage disequilibrium plotting package
Augustin Luna et al.
BIOINFORMATICS (2007)
Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study
G Evanno et al.
MOLECULAR ECOLOGY (2005)