Related references
Note: Only part of the references are listed.Claudin 3, 4, and 15 expression in solid tumors of lung adenocarcinoma versus malignant pleural mesothelioma
Siham Chaouche-Mazouni et al.
ANNALS OF DIAGNOSTIC PATHOLOGY (2015)
Coordinate Loss of MAP3K7 and CHD1 Promotes Aggressive Prostate Cancer
Lindsey Ulkus Rodrigues et al.
CANCER RESEARCH (2015)
Malignant pleural mesothelioma: New hope in the horizon with novel therapeutic strategies
J. Remon et al.
CANCER TREATMENT REVIEWS (2015)
Ryanodine Receptors: Allosteric Ion Channel Giants
Filip Van Petegem
JOURNAL OF MOLECULAR BIOLOGY (2015)
Updated patterns of failure after multimodality therapy for malignant pleural mesothelioma
Elizabeth H. Baldini et al.
JOURNAL OF THORACIC AND CARDIOVASCULAR SURGERY (2015)
Hippo Pathway Gene Mutations in Malignant Mesothelioma Revealed by RNA and Targeted Exon Sequencing
Akihiko Miyanaga et al.
JOURNAL OF THORACIC ONCOLOGY (2015)
Exome sequencing identifies somatic mutations of DDX3X in natural killer/T-cell lymphoma
Lu Jiang et al.
NATURE GENETICS (2015)
limma powers differential expression analyses for RNA-sequencing and microarray studies
Matthew E. Ritchie et al.
NUCLEIC ACIDS RESEARCH (2015)
The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
Kristin G. Ardlie et al.
SCIENCE (2015)
Reactive oxygen species a double-edged sword for mesothelioma
Serena Benedetti et al.
ONCOTARGET (2015)
Transcriptome Sequencing Reveals Potential Mechanism of Cryptic 3′ Splice Site Selection in SF3B1-mutated Cancers
Christopher DeBoever et al.
PLOS COMPUTATIONAL BIOLOGY (2015)
The tumoral and stromal immune microenvironment in malignant pleural mesothelioma: A comprehensive analysis reveals prognostic immune markers
Hideki Ujiie et al.
ONCOIMMUNOLOGY (2015)
Whole-Exome Sequencing Reveals Frequent Genetic Alterations in BAP1, NF2, CDKN2A, and CUL1 in Malignant Pleural Mesothelioma
Guangwu Guo et al.
CANCER RESEARCH (2015)
A comprehensive transcriptional portrait of human cancer cell lines
Christiaan Klijn et al.
NATURE BIOTECHNOLOGY (2015)
Spectrum of diverse genomic alterations define non-clear cell renal carcinoma
Steffen Durinck et al.
NATURE GENETICS (2015)
The immune epitope database (IEDB) 3.0
Randi Vita et al.
NUCLEIC ACIDS RESEARCH (2015)
Extrapleural Pneumonectomy in the Treatment of Epithelioid Malignant Pleural Mesothelioma Novel Prognostic Implications of Combined N1 and N2 Nodal Involvement Based on Experience in 529 Patients
David J. Sugarbaker et al.
ANNALS OF SURGERY (2014)
The Immunoreceptor TIGIT Regulates Antitumor and Antiviral CD8+ T Cell Effector Function
Robert J. Johnston et al.
CANCER CELL (2014)
Integrated Genomic Characterization of Papillary Thyroid Carcinoma
Nishant Agrawal et al.
CELL (2014)
Molecular Classification of Malignant Pleural Mesothelioma: Identification of a Poor Prognosis Subgroup Linked to the Epithelial-to-Mesenchymal Transition
Aurelien de Reynies et al.
CLINICAL CANCER RESEARCH (2014)
Systemic treatment of malignant pleural mesothelioma: new agents in clinical trials raise hope of relevant improvements
Daniel C. Christoph et al.
CURRENT OPINION IN ONCOLOGY (2014)
Methylation Silencing of ULK2, an Autophagy Gene, Is Essential for Astrocyte Transformation and Tumor Growth
Sudhanshu Shukla et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2014)
Candidate tumour suppressor CCDC19 regulates miR-184 direct targeting of C-Myc thereby suppressing cell growth in non-small cell lung cancers
Zhen Liu et al.
JOURNAL OF CELLULAR AND MOLECULAR MEDICINE (2014)
Discovery and saturation analysis of cancer genes across 21 tumour types
Michael S. Lawrence et al.
NATURE (2014)
Molecular mechanisms of epithelial-mesenchymal transition
Samy Lamouille et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2014)
Hallmarks of alternative splicing in cancer
S. Oltean et al.
ONCOGENE (2014)
Ratio of Intratumoral Macrophage Phenotypes Is a Prognostic Factor in Epithelioid Malignant Pleural Mesothelioma
Robin Cornelissen et al.
PLOS ONE (2014)
Splicing factor mutations and cancer
Kenichi Yoshida et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2014)
The Global Spread of Asbestos
Arthur L. Frank et al.
ANNALS OF GLOBAL HEALTH (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Biologic and clinical significance of somatic mutations of SF3B1 in myeloid and lymphoid neoplasms
Mario Cazzola et al.
BLOOD (2013)
MCF-7 Cells Expressing Nuclear Associated Lysyl Oxidase-like 2 (LOXL2) Exhibit an Epithelial-to-Mesenchymal Transition (EMT) Phenotype and Are Highly Invasive in Vitro
Hee-Jung Moon et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2013)
Challenges and controversies in the diagnosis of mesothelioma: Part 1. Cytology-only diagnosis, biopsies, immunohistochemistry, discrimination between mesothelioma and reactive mesothelial hyperplasia, and biomarkers
Douglas W. Henderson et al.
JOURNAL OF CLINICAL PATHOLOGY (2013)
Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants
Wenqing Fu et al.
NATURE (2013)
Mutational heterogeneity in cancer and the search for new cancer-associated genes
Michael S. Lawrence et al.
NATURE (2013)
Genomic and Epigenomic Landscapes of Adult De Novo Acute Myeloid Leukemia
Timothy J. Ley et al.
NEW ENGLAND JOURNAL OF MEDICINE (2013)
Genomic Analysis of Non-NF2 Meningiomas Reveals Mutations in TRAF7, KLF4, AKT1, and SMO
Victoria E. Clark et al.
SCIENCE (2013)
Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal
Jianjiong Gao et al.
SCIENCE SIGNALING (2013)
SF3B1 Mutations Are Associated with Alternative Splicing in Uveal Melanoma
Simon J. Furney et al.
CANCER DISCOVERY (2013)
Deciphering Signatures of Mutational Processes Operative in Human Cancer
Ludmil B. Alexandrov et al.
CELL REPORTS (2013)
Molecular Changes in Mesothelioma With an Impact on Prognosis and Treatment
Didier Jean et al.
ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE (2012)
Strelka: accurate somatic small-variant calling from sequenced tumor-normal sample pairs
Christopher T. Saunders et al.
BIOINFORMATICS (2012)
Mutational Processes Molding the Genomes of 21 Breast Cancers
Serena Nik-Zainal et al.
CELL (2012)
MuSiC: Identifying mutational significance in cancer genomes
Nathan D. Dees et al.
GENOME RESEARCH (2012)
Detecting differential usage of exons from RNA-seq data
Simon Anders et al.
GENOME RESEARCH (2012)
Malignant Mesothelioma: Facts, Myths, and Hypotheses
Michele Carbone et al.
JOURNAL OF CELLULAR PHYSIOLOGY (2012)
Medulloblastoma exome sequencing uncovers subtype-specific somatic mutations
Trevor J. Pugh et al.
NATURE (2012)
Novel mutations target distinct subgroups of medulloblastoma
Giles Robinson et al.
NATURE (2012)
Dissecting the genomic complexity underlying medulloblastoma
David T. W. Jones et al.
NATURE (2012)
Comprehensive genomic analysis identifies SOX2 as a frequently amplified gene in small-cell lung cancer
Charles M. Rudin et al.
NATURE GENETICS (2012)
Integrative genome analyses identify key somatic driver mutations of small-cell lung cancer
Martin Peifer et al.
NATURE GENETICS (2012)
The spliceosome as a target of novel antitumour drugs
Sophie Bonnal et al.
NATURE REVIEWS DRUG DISCOVERY (2012)
The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data
Ethan Cerami et al.
CANCER DISCOVERY (2012)
HLA typing from RNA-Seq sequence reads
Sebastian Boegel et al.
GENOME MEDICINE (2012)
Annotating Cancer Variants and Anti-Cancer Therapeutics in Reactome
Marija Milacic et al.
Cancers (2012)
Improving the Assessment of the Outcome of Nonsynonymous SNVs with a Consensus Deleteriousness Score, Condel
Abel Gonzalez-Perez et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2011)
RNA-sequence analysis of human B-cells
Jonathan M. Toung et al.
GENOME RESEARCH (2011)
The nuclear deubiquitinase BAP1 is commonly inactivated by somatic mutations and 3p21.1 losses in malignant pleural mesothelioma
Matthew Bott et al.
NATURE GENETICS (2011)
Germline BAP1 mutations predispose to malignant mesothelioma
Joseph R. Testa et al.
NATURE GENETICS (2011)
A framework for variation discovery and genotyping using next-generation DNA sequencing data
Mark A. DePristo et al.
NATURE GENETICS (2011)
Reactome: a database of reactions, pathways and biological processes
David Croft et al.
NUCLEIC ACIDS RESEARCH (2011)
LRRN4 and UPK3B Are Markers of Primary Mesothelial Cells
Mutsumi Kanamori-Katayama et al.
PLOS ONE (2011)
Temporal Dissection of Tumorigenesis in Primary Cancers
Steffen Durinck et al.
CANCER DISCOVERY (2011)
First somatic mutation of E2F1 in a critical DNA binding residue discovered in well-differentiated papillary mesothelioma of the peritoneum
Willie Yu et al.
GENOME BIOLOGY (2011)
GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers
Craig H. Mermel et al.
GENOME BIOLOGY (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
Fast and SNP-tolerant detection of complex variants and splicing in short reads
Thomas D. Wu et al.
BIOINFORMATICS (2010)
PICNIC: an algorithm to predict absolute allelic copy number variation with microarray cancer data
Chris D. Greenman et al.
BIOSTATISTICS (2010)
Diverse somatic mutation patterns and pathway alterations in human cancers
Zhengyan Kan et al.
NATURE (2010)
COSMIC (the Catalogue of Somatic Mutations in Cancer): a resource to investigate acquired mutations in human cancer
Simon A. Forbes et al.
NUCLEIC ACIDS RESEARCH (2010)
Second Generation Sequencing of the Mesothelioma Tumor Genome
Raphael Bueno et al.
PLOS ONE (2010)
Differential expression analysis for sequence count data
Simon Anders et al.
GENOME BIOLOGY (2010)
ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data
Martin Morgan et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Differentially expressed alternatively spliced genes in Malignant Pleural Mesothelioma identified using massively parallel transcriptome sequencing
Lingsheng Dong et al.
BMC MEDICAL GENETICS (2009)
Spatial smoothing and hot spot detection for CGH data using the fused lasso
Robert Tibshirani et al.
BIOSTATISTICS (2008)
A microaliquoting technique for precise histological annotation and optimization of cell content in frozen tissue specimens
W. G. Richards et al.
BIOTECHNIC & HISTOCHEMISTRY (2007)
SET domain protein lysine methyltransferases: Structure, specificity and catalysis
C. Qian et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2006)
Global gene expression profiling of pleural mesotheliomas:: Overexpression of aurora kinases and P16/CDKN2A deletion as prognostic factors and critical evaluation of microarray-based prognostic prediction
F López-Ríos et al.
CANCER RESEARCH (2006)
SMK-1, an essential regulator of DAF-16-mediated longevity
S Wolff et al.
CELL (2006)
Sensitivity and specificity of immunohistochemical markers used in the diagnosis of epithelioid mesothelioma: a detailed systematic analysis using published data
JE King et al.
HISTOPATHOLOGY (2006)
Multimodality treatments in the management of malignant pleural mesothelioma: An update
R Bueno
HEMATOLOGY-ONCOLOGY CLINICS OF NORTH AMERICA (2005)
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
A Subramanian et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
A mouse model recapitulating molecular features of human mesothelioma
DA Altomare et al.
CANCER RESEARCH (2005)
Identification of novel candidate oncogenes and tumor suppressors in malignant pleural mesothelioma using large-scale transcriptional profiling
GJ Gordon et al.
AMERICAN JOURNAL OF PATHOLOGY (2005)
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
TD Wu et al.
BIOINFORMATICS (2005)
Metagenes and molecular pattern discovery using matrix factorization
JP Brunet et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Gene expression profiles predict survival and progression of pleural mesothelioma
HI Pass et al.
CLINICAL CANCER RESEARCH (2004)
Pleural biopsy: A reliable method for determining the diagnosis but not subtype in mesothelioma
R Bueno et al.
ANNALS OF THORACIC SURGERY (2004)
Using gene expression ratios to predict outcome among patients with mesothelioma
GJ Gordon et al.
JOURNAL OF THE NATIONAL CANCER INSTITUTE (2003)
Human non-synonymous SNPs: server and survey
V Ramensky et al.
NUCLEIC ACIDS RESEARCH (2002)
Accounting for human polymorphisms predicted to affect protein function
PC Ng et al.
GENOME RESEARCH (2002)
dbSNP: the NCBI database of genetic variation
ST Sherry et al.
NUCLEIC ACIDS RESEARCH (2001)