Related references
Note: Only part of the references are listed.Breast cancer risk variants at 6q25 display different phenotype associations and regulate ESR1, RMND1 and CCDC170
Alison M. Dunning et al.
NATURE GENETICS (2016)
ABC: a tool to identify SNVs causing allele-specific transcription factor binding from ChIP-Seq experiments
Swneke D. Bailey et al.
BIOINFORMATICS (2015)
Frequent somatic transfer of mitochondrial DNA into the nuclear genome of human cancer cells
Young Seok Ju et al.
GENOME RESEARCH (2015)
Cell-of-origin chromatin organization shapes the mutational landscape of cancer
Paz Polak et al.
NATURE (2015)
CTCF/cohesin-binding sites are frequently mutated in cancer
Riku Katainen et al.
NATURE GENETICS (2015)
The transcription factor GABP selectively binds and activates the mutant TERT promoter in cancer
Robert J. A. Bell et al.
SCIENCE (2015)
C6ORF97-ESR1 breast cancer susceptibility locus: influence on progression and survival in breast cancer patients
Mutsuko Yamamoto-Ibusuki et al.
EUROPEAN JOURNAL OF HUMAN GENETICS (2015)
ZNF143 provides sequence specificity to secure chromatin interactions at gene promoters
Swneke D. Bailey et al.
NATURE COMMUNICATIONS (2015)
Reconfiguration of nucleosome-depleted regions at distal regulatory elements accompanies DNA methylation of enhancers and insulators in cancer
Phillippa C. Taberlay et al.
GENOME RESEARCH (2014)
Reduced local mutation density in regulatory DNA of cancer genomes is linked to DNA repair
Paz Polak et al.
NATURE BIOTECHNOLOGY (2014)
Recessive mutations in a distal PTF1A enhancer cause isolated pancreatic agenesis
Michael N. Weedon et al.
NATURE GENETICS (2014)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
Integrative eQTL-Based Analyses Reveal the Biology of Breast Cancer Risk Loci
Qiyuan Li et al.
CELL (2013)
Mutational heterogeneity in cancer and the search for new cancer-associated genes
Michael S. Lawrence et al.
NATURE (2013)
Signatures of mutational processes in human cancer
Ludmil B. Alexandrov et al.
NATURE (2013)
Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples
Kristian Cibulskis et al.
NATURE BIOTECHNOLOGY (2013)
HOCOMOCO: a comprehensive collection of human transcription factor binding sites models
Ivan V. Kulakovskiy et al.
NUCLEIC ACIDS RESEARCH (2013)
TERT Promoter Mutations in Familial and Sporadic Melanoma
Susanne Horn et al.
SCIENCE (2013)
Exonic Transcription Factor Binding Directs Codon Choice and Affects Protein Evolution
Andrew B. Stergachis et al.
SCIENCE (2013)
Highly Recurrent TERT Promoter Mutations in Human Melanoma
Franklin W. Huang et al.
SCIENCE (2013)
MuSiC: Identifying mutational significance in cancer genomes
Nathan D. Dees et al.
GENOME RESEARCH (2012)
Linking disease associations with regulatory information in the human genome
Marc A. Schaub et al.
GENOME RESEARCH (2012)
A meta-analysis of genome-wide association studies of breast cancer identifies two novel susceptibility loci at 6q14 and 20q11
Afshan Siddiq et al.
HUMAN MOLECULAR GENETICS (2012)
The long-range interaction landscape of gene promoters
Amartya Sanyal et al.
NATURE (2012)
The accessible chromatin landscape of the human genome
Robert E. Thurman et al.
NATURE (2012)
Breast cancer risk-associated SNPs modulate the affinity of chromatin for FOXA1 and alter gene expression
Richard Cowper-Sal-lari et al.
NATURE GENETICS (2012)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
Systematic Localization of Common Disease-Associated Variation in Regulatory DNA
Matthew T. Maurano et al.
SCIENCE (2012)
Cell type-specific binding patterns reveal that TCF7L2 can be tethered to the genome by association with GATA3
Seth Frietze et al.
GENOME BIOLOGY (2012)
The variant call format and VCFtools
Petr Danecek et al.
BIOINFORMATICS (2011)
FIMO: scanning for occurrences of a given motif
Charles E. Grant et al.
BIOINFORMATICS (2011)
Novel Breast Cancer Susceptibility Locus at 9q31.2: Results of a Genome-Wide Association Study
Olivia Fletcher et al.
JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE (2011)
Chromatin accessibility pre-determines glucocorticoid receptor binding patterns
Sam John et al.
NATURE GENETICS (2011)
A User's Guide to the Encyclopedia of DNA Elements (ENCODE)
Richard M. Myers et al.
PLOS BIOLOGY (2011)
ESR1 Is Co-Expressed with Closely Adjacent Uncharacterised Genes Spanning a Breast Cancer Susceptibility Locus at 6q25.1
Anita K. Dunbier et al.
PLOS GENETICS (2011)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
A map of human genome variation from population-scale sequencing
David Altshuler et al.
NATURE (2010)
Discovery and characterization of chromatin states for systematic annotation of the human genome
Jason Ernst et al.
NATURE BIOTECHNOLOGY (2010)
Genome-wide association study identifies five new breast cancer susceptibility loci
Clare Turnbull et al.
NATURE GENETICS (2010)
Ancestry-Shift Refinement Mapping of the C6orf97-ESR1 Breast Cancer Susceptibility Locus
Simon N. Stacey et al.
PLOS GENETICS (2010)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Genome-wide association study identifies a new breast cancer susceptibility locus at 6q25.1
Wei Zheng et al.
NATURE GENETICS (2009)
ESR1 gene amplification in breast cancer:: a common phenomenon?
Anne Vincent-Salomon et al.
NATURE GENETICS (2008)
ESR1 gene amplification in breast cancer:: a common phenomenon?
Jorge S. Reis-Filho et al.
NATURE GENETICS (2008)
ESR1 gene amplification in breast cancer:: a common phenomenon?
Lindsay A. Brown et al.
NATURE GENETICS (2008)
ESR1 gene amplification in breast cancer:: a common phenomenon?
Hugo M. Horlings et al.
NATURE GENETICS (2008)
Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs
Joshua M. Korn et al.
NATURE GENETICS (2008)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
PLINK: A tool set for whole-genome association and population-based linkage analyses
Shaun Purcell et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2007)
Quantitative analysis of chromosome conformation capture assays (3C-qPCR)
Helene Hagege et al.
NATURE PROTOCOLS (2007)
Opinion - Oestrogen-receptor-mediated transcription and the influence of co-factors and chromatin state
Kelly A. Green et al.
NATURE REVIEWS CANCER (2007)
Protein length in eukaryotic and prokaryotic proteomes
L Brocchieri et al.
NUCLEIC ACIDS RESEARCH (2005)
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
BM Bolstad et al.
BIOINFORMATICS (2003)
Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method
KJ Livak et al.
METHODS (2001)