Related references
Note: Only part of the references are listed.Avoiding Misannotation of In-Source Fragmentation Products as Cellular Metabolites in Liquid Chromatography-Mass Spectrometry-Based Metabolomics
Yi-Fan Xu et al.
ANALYTICAL CHEMISTRY (2015)
Data, information, knowledge and principle: back to metabolism in KEGG
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2014)
Visual account of protein investment in cellular functions
Wolfram Liebermeister et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
13CFLUX2-high-performance software suite for C-13-metabolic flux analysis
Michael Weitzel et al.
BIOINFORMATICS (2013)
Escherichia coli achieves faster growth by increasing catalytic and translation rates of proteins
Kaspar Valgepea et al.
MOLECULAR BIOSYSTEMS (2013)
Glutamine-driven oxidative phosphorylation is a major ATP source in transformed mammalian cells in both normoxia and hypoxia
Jing Fan et al.
MOLECULAR SYSTEMS BIOLOGY (2013)
BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA
Ida Schomburg et al.
NUCLEIC ACIDS RESEARCH (2013)
Glycolytic strategy as a tradeoff between energy yield and protein cost
Avi Flamholz et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Consistent Estimation of Gibbs Energy Using Component Contributions
Elad Noor et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
Quantitative Assignment of Reaction Directionality in a Multicompartmental Human Metabolic Reconstruction
H. S. Haraldsdottir et al.
BIOPHYSICAL JOURNAL (2012)
Comparative Proteomic Analysis of Eleven Common Cell Lines Reveals Ubiquitous but Varying Expression of Most Proteins
Tamar Geiger et al.
MOLECULAR & CELLULAR PROTEOMICS (2012)
Ultrasensitive regulation of anapleurosis via allosteric activation of PEP carboxylase
Yi-Fan Xu et al.
NATURE CHEMICAL BIOLOGY (2012)
Elimination of Thermodynamically Infeasible Loops in Steady-State Metabolic Models
Jan Schellenberger et al.
BIOPHYSICAL JOURNAL (2011)
Metabolomic Analysis via Reversed-Phase Ion-Pairing Liquid Chromatography Coupled to a Stand Alone Orbitrap Mass Spectrometer
Wenyun Lu et al.
ANALYTICAL CHEMISTRY (2010)
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
Jan Schellenberger et al.
BMC BIOINFORMATICS (2010)
Measuring enzyme activities under standardized in vivo-like conditions for systems biology
Karen van Eunen et al.
FEBS JOURNAL (2010)
Quantitative assignment of reaction directionality in constraint-based models of metabolism: Application to Escherichia coli
R. M. T. Fleming et al.
BIOPHYSICAL CHEMISTRY (2009)
Influence of Uncertainties in pH, pMg, Activity Coefficients, Metabolite Concentrations, and Other Factors on the Analysis of the Thermodynamic Feasibility of Metabolic Pathways
Vojislav Vojinovic et al.
BIOTECHNOLOGY AND BIOENGINEERING (2009)
Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli
Bryson D. Bennett et al.
NATURE CHEMICAL BIOLOGY (2009)
Ensemble Modeling of Metabolic Networks
Linh M. Tran et al.
BIOPHYSICAL JOURNAL (2008)
Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
Lyris M. F. de Godoy et al.
NATURE (2008)
Absolute quantitation of intracellular metabolite concentrations by an isotope ratio-based approach
Bryson D. Bennett et al.
NATURE PROTOCOLS (2008)
The thermodynamic meaning of metabolic exchange fluxes
Wolfgang Wiechert
BIOPHYSICAL JOURNAL (2007)
Acidic acetonitrile for cellular metabolome extraction from Escherichia coli
Joshua D. Rabinowitz et al.
ANALYTICAL CHEMISTRY (2007)
Intracellular crowding defines the mode and sequence of substrate uptake by Escherichia coli and constrains its metabolic activity
Q. K. Beg et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Including metabolite concentrations into flux balance analysis:: Thermodynamic realizability as a constraint on flux distributions in metabolic networks
Andreas Hoppe et al.
BMC SYSTEMS BIOLOGY (2007)
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
Adam M. Feist et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
Metabolic flux analysis at ultra short time scale:: Isotopically non-stationary 13C labeling experiments
Katharina Noeh et al.
JOURNAL OF BIOTECHNOLOGY (2007)
Thermodynamics-based metabolic flux analysis
Christopher S. Henry et al.
BIOPHYSICAL JOURNAL (2007)
Relationship between Thermodynamic Driving Force and One-Way Fluxes in Reversible Processes
Daniel A. Beard et al.
PLOS ONE (2007)
Kinetic flux profiling of nitrogen assimilation in Escherichia coli
Jie Yuan et al.
NATURE CHEMICAL BIOLOGY (2006)
A mouse model system to genetically dissect the molecular mechanisms regulating tumorigenesis
Kurt Degenhardt et al.
CLINICAL CANCER RESEARCH (2006)
Separation and quantitation of water soluble cellular metabolites by hydrophilic interaction chromatography-tandem mass spectrometry
Sunil U. Bajad et al.
JOURNAL OF CHROMATOGRAPHY A (2006)
Determination of confidence intervals of metabolic fluxes estimated from stable isotope measurements
Maciek R. Antoniewicz et al.
METABOLIC ENGINEERING (2006)
Genome-scale thermodynamic analysis of Escherichia coli metabolism
CS Henry et al.
BIOPHYSICAL JOURNAL (2006)
Optimality and evolutionary tuning of the expression level of a protein
E Dekel et al.
NATURE (2005)
Coenzyme A: Back in action
R Leonardi et al.
PROGRESS IN LIPID RESEARCH (2005)
MIRACLE:: mass isotopomer ratio analysis of U-13C-labeled extracts.: A new method for accurate quantification of changes in concentrations of intracellular metabolites
MR Mashego et al.
BIOTECHNOLOGY AND BIOENGINEERING (2004)
Thermodynamic constraints for biochemical networks
DA Beard et al.
JOURNAL OF THEORETICAL BIOLOGY (2004)
The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli
S Sundararaj et al.
NUCLEIC ACIDS RESEARCH (2004)
Dynamic modeling of the central carbon metabolism of Escherichia coli
C Chassagnole et al.
BIOTECHNOLOGY AND BIOENGINEERING (2002)
Protein kinases - the major drug targets of the twenty-first century?
P Cohen
NATURE REVIEWS DRUG DISCOVERY (2002)
Metabolic engineering
J Nielsen
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2001)
A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations
LM Raamsdonk et al.
NATURE BIOTECHNOLOGY (2001)
Share Paper
