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Integral membrane proteins in proteomics. How to break open the black box?
O. Vit et al.
JOURNAL OF PROTEOMICS (2017)
Cellular and Molecular Anatomy of the Human Neuromuscular Junction
Ross A. Jones et al.
CELL REPORTS (2017)
Single Muscle Fiber Proteomics Reveals Fiber-Type-Specific Features of Human Muscle Aging
Marta Murgia et al.
CELL REPORTS (2017)
Comprehensive proteome analysis of human skeletal muscle in cachexia and sarcopenia: a pilot study
H. Alexander Ebhardt et al.
JOURNAL OF CACHEXIA SARCOPENIA AND MUSCLE (2017)
Coomassie staining provides routine (sub)femtomole in-gel detection of intact proteoforms: Expanding opportunities for genuine Top-down Proteomics
Nour Noaman et al.
ELECTROPHORESIS (2017)
Myosin content of individual human muscle fibers isolated by laser capture microdissection
Charles A. Stuart et al.
AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY (2016)
Proteomic profiling of muscle fibre type shifting in neuromuscular diseases
Paul Dowling et al.
EXPERT REVIEW OF PROTEOMICS (2016)
With or without you - Proteomics with or without major plasma/serum proteins
Elisabetta Gianazza et al.
JOURNAL OF PROTEOMICS (2016)
A laser microdissection-based workflow for FFPE tissue microproteomics: Important considerations for small sample processing
Remi Longuespee et al.
METHODS (2016)
Mass-spectrometric exploration of proteome structure and function
Ruedi Aebersold et al.
NATURE (2016)
Six alternative proteases for mass spectrometry-based proteomics beyond trypsin
Piero Giansanti et al.
NATURE PROTOCOLS (2016)
Quantitative proteome profiling of dystrophic dog skeletal muscle reveals a stabilized muscular architecture and protection against oxidative stress after systemic delivery of MuStem cells
Aurelie Lardenois et al.
PROTEOMICS (2016)
2D gel-based Proteomics: there's life in the old dog yet
Reiner Westermeier
ARCHIVES OF PHYSIOLOGY AND BIOCHEMISTRY (2016)
New insights into the protein aggregation pathology in myotilinopathy by combined proteomic and immunolocalization analyses
A. Maerkens et al.
ACTA NEUROPATHOLOGICA COMMUNICATIONS (2016)
Comparative Skeletal Muscle Proteomics Using Two-Dimensional Gel Electrophoresis
Sandra Murphy et al.
PROTEOMES (2016)
Global Phosphoproteomic Analysis of Human Skeletal Muscle Reveals a Network of Exercise-Regulated Kinases and AMPK Substrates
Nolan J. Hoffman et al.
CELL METABOLISM (2015)
Proteomics beyond trypsin
Liana Tsiatsiani et al.
FEBS JOURNAL (2015)
Stable isotope labelling methods in mass spectrometry-based quantitative-proteomics
Osama Chahrour et al.
JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS (2015)
Less is More: Membrane Protein Digestion Beyond Urea-Trypsin Solution for Next-level Proteomics
Xi Zhang
MOLECULAR & CELLULAR PROTEOMICS (2015)
Deep Proteomics of Mouse Skeletal Muscle Enables Quantitation of Protein Isoforms, Metabolic Pathways, and Transcription Factors
Atul S. Deshmukh et al.
MOLECULAR & CELLULAR PROTEOMICS (2015)
Current approaches and challenges in targeted absolute quantification of membrane proteins
Christian Troetschel et al.
PROTEOMICS (2015)
The interactions between mitochondria and sarcoplasmic reticulum and the proteome characterization of mitochondrion-associated membrane from rabbit skeletal muscle
Zhouying Liu et al.
PROTEOMICS (2015)
State of the art of 2D DIGE
Georgia Arentz et al.
PROTEOMICS CLINICAL APPLICATIONS (2015)
Mitochondrial specialization revealed by single muscle fiber proteomics: focus on the Krebs cycle
S. Schiaffino et al.
SCANDINAVIAN JOURNAL OF MEDICINE & SCIENCE IN SPORTS (2015)
Tissue-based map of the human proteome
Mathias Uhlen et al.
SCIENCE (2015)
Proteomics of muscle chronological ageing in post-menopausal women
Marine Gueugneau et al.
BMC GENOMICS (2014)
Horizontal comparative fluorescence two-dimensional gel electrophoresis for improved spot coordinate detection
Marina Hanneken et al.
ELECTROPHORESIS (2014)
Genomics of alternative splicing: evolution, development and pathophysiology
Eric R. Gamazon et al.
HUMAN GENETICS (2014)
Proteomic and bioinformatic analysis of differentially expressed proteins in denervated skeletal muscle
Hualin Sun et al.
INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE (2014)
Isobaric Labeling-Based Relative Quantification in Shotgun Proteomics
Navin Rauniyar et al.
JOURNAL OF PROTEOME RESEARCH (2014)
2DE: The Phoenix of Proteomics
Bruno M. Oliveira et al.
JOURNAL OF PROTEOMICS (2014)
Label-free Quantitative Protein Profiling of vastus lateralis Muscle During Human Aging
Laetitia Theron et al.
MOLECULAR & CELLULAR PROTEOMICS (2014)
A draft map of the human proteome
Min-Sik Kim et al.
NATURE (2014)
Mass-spectrometry-based draft of the human proteome
Mathias Wilhelm et al.
NATURE (2014)
Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells
Nils A. Kulak et al.
NATURE METHODS (2014)
Proteomic analysis of laser capture microscopy purified myotendinous junction regions from muscle sections
Tugba Can et al.
PROTEOME SCIENCE (2014)
Label-free profiling of skeletal muscle using high-definition mass spectrometry
Jatin G. Burniston et al.
PROTEOMICS (2014)
The first pilot project of the consortium for top-down proteomics: A status report
Xibei Dang et al.
PROTEOMICS (2014)
Looking at proteins from two dimensions: a review on five decades of 2D electrophoresis
Reiner Westermeier
ARCHIVES OF PHYSIOLOGY AND BIOCHEMISTRY (2014)
Physicochemical mechanisms of protein regulation by phosphorylation
Hafumi Nishi et al.
FRONTIERS IN GENETICS (2014)
Proteomic identification of biomarkers of skeletal muscle disorders
Kay Ohlendieck
BIOMARKERS IN MEDICINE (2013)
Proteomics methods for subcellular proteome analysis
Romain Drissi et al.
FEBS JOURNAL (2013)
Muscle type and fiber type specificity in muscle wasting
Stefano Ciciliot et al.
INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY (2013)
O-GlcNAcylation of αB-crystallin regulates its stress-induced translocation and cytoprotection
Vigneshwaran Krishnamoorthy et al.
MOLECULAR AND CELLULAR BIOCHEMISTRY (2013)
Proteoform: a single term describing protein complexity
Lloyd M. Smith et al.
NATURE METHODS (2013)
Isobaric Tagging-Based Quantification for Proteomic Analysis: A Comparative Study of Spared and Affected Muscles from mdx Mice at the Early Phase of Dystrophy
Cintia Yuri Matsumura et al.
PLOS ONE (2013)
Shotgun proteomic analysis of sarcoplasmic reticulum preparations from rabbit skeletal muscle
Zhouying Liu et al.
PROTEOMICS (2013)
Label-Free LC-MS Profiling of Skeletal Muscle Reveals Heart-Type Fatty Acid Binding Protein as a Candidate Biomarker of Aerobic Capacity
Zulezwan A. Malik et al.
PROTEOMES (2013)
A blue dive: from 'blue fingers' to 'blue silver'. A comparative overview of staining methods for in-gel proteomics
Isabella Panfoli et al.
EXPERT REVIEW OF PROTEOMICS (2012)
Mass spectrometry-based proteomic analysis of middle-aged vs. aged vastus lateralis reveals increased levels of carbonic anhydrase isoform 3 in senescent human skeletal muscle
Lisa Staunton et al.
INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE (2012)
Comparative Study of Workflows Optimized for In-gel, In-solution, and On-filter Proteolysis in the Analysis of Plasma Membrane Proteins
Waeowalee Choksawangkarn et al.
JOURNAL OF PROTEOME RESEARCH (2012)
Large-Scale Quantitative Assessment of Different In-Solution Protein Digestion Protocols Reveals Superior Cleavage Efficiency of Tandem Lys-C/Trypsin Proteolysis over Trypsin Digestion
Timo Glatter et al.
JOURNAL OF PROTEOME RESEARCH (2012)
Differential proteome and transcriptome analysis of porcine skeletal muscle during development
Yongjie Xu et al.
JOURNAL OF PROTEOMICS (2012)
On Marathons and Sprints: An Integrated Quantitative Proteomics and Transcriptomics Analysis of Differences Between Slow and Fast Muscle Fibers
Hannes C. A. Drexler et al.
MOLECULAR & CELLULAR PROTEOMICS (2012)
Advances in human proteomics at high scale with the SOMAscan proteomics platform
Larry Gold et al.
NEW BIOTECHNOLOGY (2012)
Mass Spectrometric Characterization of the Sarcoplasmic Reticulum from Rabbit Skeletal Muscle by On-membrane Digestion
Lisa Staunton et al.
PROTEIN AND PEPTIDE LETTERS (2012)
Affinity purification of protein complexes for analysis by multidimensional protein identification technology
Charles A. S. Banks et al.
PROTEIN EXPRESSION AND PURIFICATION (2012)
Protein differences between human trapezius and vastus lateralis muscles determined with a proteomic approach
Jenny Hadrevi et al.
BMC MUSCULOSKELETAL DISORDERS (2011)
Diversity of human skeletal muscle in health and disease: Contribution of proteomics
Cecilia Gelfi et al.
JOURNAL OF PROTEOMICS (2011)
Two-dimensional gel electrophoresis in proteomics: A tutorial
Thierry Rabilloud et al.
JOURNAL OF PROTEOMICS (2011)
FIBER TYPES IN MAMMALIAN SKELETAL MUSCLES
Stefano Schiaffino et al.
PHYSIOLOGICAL REVIEWS (2011)
Integrated genomics and proteomics of the Torpedo californica electric organ: concordance with the mammalian neuromuscular junction
Suzanne E. Mate et al.
SKELETAL MUSCLE (2011)
Skeletal muscle proteomics: current approaches, technical challenges and emerging techniques
Kay Ohlendieck
SKELETAL MUSCLE (2011)
Fibre types in skeletal muscle: a personal account
S. Schiaffino
ACTA PHYSIOLOGICA (2010)
Mass spectrometric identification of dystrophin isoform Dp427 by on-membrane digestion of sarcolemma from skeletal muscle
Caroline Lewis et al.
ANALYTICAL BIOCHEMISTRY (2010)
Proteomics of skeletal muscle glycolysis
Kay Ohlendieck
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2010)
Biochemical markers of muscular damage
Paola Brancaccio et al.
CLINICAL CHEMISTRY AND LABORATORY MEDICINE (2010)
Mammalian mitochondrial proteomics: insights into mitochondrial functions and mitochondria-related diseases
Xiulan Chen et al.
EXPERT REVIEW OF PROTEOMICS (2010)
Mass spectrometry-based proteomics in cell biology
Tobias C. Walther et al.
JOURNAL OF CELL BIOLOGY (2010)
Myoferlin regulation by NFAT in muscle injury, regeneration and repair
Alexis R. Demonbreun et al.
JOURNAL OF CELL SCIENCE (2010)
Two-dimensional gel electrophoresis in proteomics: Past, present and future
Thierry Rabilloud et al.
JOURNAL OF PROTEOMICS (2010)
Long term bed rest with and without vibration exercise countermeasures: Effects on human muscle protein dysregulation
Manuela Moriggi et al.
PROTEOMICS (2010)
Subcellular fractionation methods and strategies for proteomics
Yie Hou Lee et al.
PROTEOMICS (2010)
Proteomics by Mass Spectrometry: Approaches, Advances, and Applications
John R. Yates et al.
Annual Review of Biomedical Engineering (2009)
Plasticity of the Muscle Proteome to Exercise at Altitude
Martin Flueck
HIGH ALTITUDE MEDICINE & BIOLOGY (2009)
Peptide Separations by On-Line MudPIT Compared to Isoelectric Focusing in an Off-Gel Format: Application to a Membrane-Enriched Fraction from C2C12 Mouse Skeletal Muscle Cells
Sarah Elschenbroich et al.
JOURNAL OF PROTEOME RESEARCH (2009)
Characterization of Human Skeletal Muscle Biopsy Samples Using Shotgun Proteomics
Kenneth C. Parker et al.
JOURNAL OF PROTEOME RESEARCH (2009)
Combination of FASP and StageTip-Based Fractionation Allows In-Depth Analysis of the Hippocampal Membrane Proteome
Jacek R. Wisniewski et al.
JOURNAL OF PROTEOME RESEARCH (2009)
Universal sample preparation method for proteome analysis
Jacek R. Wisniewski et al.
NATURE METHODS (2009)
Native-DIGE: A new look at the mitochondrial membrane proteome
Diksha Dani et al.
Biotechnology Journal (2008)
Lectin-based proteomic profiling of aged skeletal muscle: Decreased pyruvate kinase isozyme M1 exhibits drastically increased levels of N-glycosylation
Kathleen O'Connell et al.
EUROPEAN JOURNAL OF CELL BIOLOGY (2008)
Opposite pathobiochemical fate of pyruvate kinase and adenylate kinase in aged rat skeletal muscle as revealed by proteomic DIGE analysis
Philip Doran et al.
PROTEOMICS (2008)
A proteome map of murine heart and skeletal muscle
Katy Raddatz et al.
PROTEOMICS (2008)
Characterization of the human skeletal muscle proteome by one-dimensional gel electrophoresis and HPLC-ESI-MS/MS
Kurt Hojlund et al.
MOLECULAR & CELLULAR PROTEOMICS (2008)
Oxidation of Prx2 and phosphorylation of GRP58 by angiotensin II in human coronary smooth muscle cells identified by 2D-DIGE analysis
Yoshiko Tokutomi et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2007)
Analysis and validation of proteomic data generated by tandem mass spectrometry
Alexey I. Nesvizhskii et al.
NATURE METHODS (2007)
Aging skeletal muscle shows a drastic increase in the small heat shock proteins αB-crystallin/HspB35 and cvHsp/HspB7
Philip Doran et al.
EUROPEAN JOURNAL OF CELL BIOLOGY (2007)
Proteomic profiling of chronic low-frequency stimulated fast muscle
Pamela Donoghue et al.
PROTEOMICS (2007)
Subcellular proteomics of mice gastrocnemius and soleus muscles
Rui Vitorino et al.
ANALYTICAL BIOCHEMISTRY (2007)
Phosphoproteomics strategies for the functional analysis of signal transduction
Sandra Morandell et al.
PROTEOMICS (2006)
The human muscle proteome in aging
Cecilia Gelfi et al.
JOURNAL OF PROTEOME RESEARCH (2006)
Review - Mass spectrometry and protein analysis
B Domon et al.
SCIENCE (2006)
Laser-capture microdissection
Virginia Espina et al.
NATURE PROTOCOLS (2006)
State-of-the-art two-dimensional gel electrophoresis: a key tool of proteomics research
Odile Carrette et al.
NATURE PROTOCOLS (2006)
Increase in S6K1 phosphorylation in human skeletal muscle following resistance exercise occurs mainly in type II muscle fibers
Rene Koopman et al.
AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM (2006)
2-D protein maps of rat gastrocnemius and soleus muscles: A tool for muscle plasticity assessment
C Gelfi et al.
PROTEOMICS (2006)
Concentrations of glycolytic enzymes and other cytosolic proteins in the diffusible fraction of a vertebrate muscle proteome
DW Maughan et al.
MOLECULAR & CELLULAR PROTEOMICS (2005)
Proteomic analysis of slow- and fast-twitch skeletal muscles
N Okumura et al.
PROTEOMICS (2005)
Comparison of protein expression in human deltoideus and vastus lateralis muscles using two-dimensional gel electrophoresis
D Capitanio et al.
PROTEOMICS (2005)
Current two-dimensional electrophoresis technology for proteomics
A Görg et al.
PROTEOMICS (2004)
Mapping of bovine skeletal muscle proteins using two-dimensional gel electrophoresis and mass spectrometry
J Bouley et al.
PROTEOMICS (2004)
Proteomic analysis of post-translational modifications
M Mann et al.
NATURE BIOTECHNOLOGY (2003)
Drastic reduction of calsequestrin-like proteins and impaired calcium binding in dystrophic mdx muscle
K Culligan et al.
JOURNAL OF APPLIED PHYSIOLOGY (2002)