Related references
Note: Only part of the references are listed.Comprehensive analysis of single cell ATAC-seq data with SnapATAC
Rongxin Fang et al.
NATURE COMMUNICATIONS (2021)
Lentivirus-mediated gene therapy for Fabry disease
Aneal Khan et al.
NATURE COMMUNICATIONS (2021)
Clonal tracking in gene therapy patients reveals a diversity of human hematopoietic differentiation programs
Emmanuelle Six et al.
BLOOD (2020)
CD19-targeting CAR T cell immunotherapy outcomes correlate with genomic modification by vector integration
Christopher L. Nobles et al.
JOURNAL OF CLINICAL INVESTIGATION (2020)
Joint profiling of chromatin accessibility and CAR-T integration site analysis at population and single-cell levels T cells
Wenliang Wang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Clonal kinetics and single-cell transcriptional profiling of CAR-T cells in patients undergoing CD19 CAR-T immunotherapy
Alyssa Sheih et al.
NATURE COMMUNICATIONS (2020)
Large DNA Methylation Nadirs Anchor Chromatin Loops Maintaining Hematopoietic Stem Cell Identity
Xiaotian Zhang et al.
MOLECULAR CELL (2020)
Expanded encyclopaedias of DNA elements in the human and mouse genomes
Jill E. Moore et al.
NATURE (2020)
The Art and Science of Selecting a CD123-Specific Chimeric Antigen Receptor for Clinical Testing
Janice M. Riberdy et al.
MOLECULAR THERAPY-METHODS & CLINICAL DEVELOPMENT (2020)
Gene therapy targeting haematopoietic stem cells for inherited diseases: progress and challenges
Marina Cavazzana et al.
NATURE REVIEWS DRUG DISCOVERY (2019)
Lentiviral Gene Therapy Combined with Low-Dose Busulfan in Infants with SCID-X1
Ewelina Mamcarz et al.
NEW ENGLAND JOURNAL OF MEDICINE (2019)
3D Chromosomal Landscapes in Hematopoiesis and Immunity
Andreas Kloetgen et al.
TRENDS IN IMMUNOLOGY (2019)
Spatially clustered loci with multiple enhancers are frequent targets of HIV-1 integration
Bojana Lucic et al.
NATURE COMMUNICATIONS (2019)
Revealing Hi-C subcompartments by imputing inter-chromosomal chromatin interactions
Kyle Xiong et al.
NATURE COMMUNICATIONS (2019)
COSMIC: the Catalogue Of Somatic Mutations In Cancer
John G. Tate et al.
NUCLEIC ACIDS RESEARCH (2019)
Integrating single-cell transcriptomic data across different conditions, technologies, and species
Andrew Butler et al.
NATURE BIOTECHNOLOGY (2018)
Chimeric Antigen Receptor Therapy
Carl H. June et al.
NEW ENGLAND JOURNAL OF MEDICINE (2018)
Coactivator condensation at super-enhancers links phase separation and gene control
Benjamin R. Sabari et al.
SCIENCE (2018)
A pathway for mitotic chromosome formation
Johan H. Gibcus et al.
SCIENCE (2018)
Interactions between Retroviruses and the Host Cell Genome
Valentina Poletti et al.
MOLECULAR THERAPY-METHODS & CLINICAL DEVELOPMENT (2018)
Mapping 3D genome organization relative to nuclear compartments using TSA-Seq as a cytological ruler
Yu Chen et al.
JOURNAL OF CELL BIOLOGY (2018)
Pan-cancer genome and transcriptome analyses of 1,699 paediatric leukaemias and solid tumours
Xiaotu Ma et al.
NATURE (2018)
Dynamics of genetically engineered hematopoietic stem and progenitor cells after autologous transplantation in humans
Serena Scala et al.
NATURE MEDICINE (2018)
The nuclear pore complex: understanding its function through structural insight
Martin Beck et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2017)
chromVAR : inferring transcription-factor-associated accessibility from single-cell epigenomic data
Alicia N. Schep et al.
NATURE METHODS (2017)
Gene Therapy in a Patient with Sickle Cell Disease
Jean-Antoine Ribeil et al.
NEW ENGLAND JOURNAL OF MEDICINE (2017)
Chromatin organization regulates viral egress dynamics
Vesa Aho et al.
SCIENTIFIC REPORTS (2017)
INSPIIRED: Quantification and Visualization Tools for Analyzing Integration Site Distributions
Charles C. Berry et al.
MOLECULAR THERAPY-METHODS & CLINICAL DEVELOPMENT (2017)
Hematopoietic Stem Cell Gene Therapy: Progress and Lessons Learned
Richard A. Morgan et al.
CELL STEM CELL (2017)
Getting to and through the inner nuclear membrane during herpesvirus nuclear egress
Ming F. Lye et al.
CURRENT OPINION IN CELL BIOLOGY (2017)
dbSUPER: a database of super-enhancers in mouse and human genome
Aziz Khan et al.
NUCLEIC ACIDS RESEARCH (2016)
The Nuclear Pore Complex as a Flexible and DynamicGate
Kevin E. Knockenhauer et al.
CELL (2016)
In Vivo Tracking of Human Hematopoiesis Reveals Patterns of Clonal Dynamics during Early and Steady-State Reconstitution Phases
Luca Biasco et al.
CELL STEM CELL (2016)
Nucleoporins and chromatin metabolism
Christopher Ptak et al.
CURRENT OPINION IN CELL BIOLOGY (2016)
TAD disruption as oncogenic driver
Anne-Laure Valton et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2016)
Nucleoporin-mediated regulation of cell identity genes
Arkaitz Ibarra et al.
GENES & DEVELOPMENT (2016)
Clonal Dynamics In Vivo of Virus Integration Sites of T Cells Expressing a Safety Switch
Edmund C. Chang et al.
MOLECULAR THERAPY (2016)
Lentiviral hematopoietic stem cell gene therapy for X-linked severe combined immunodeficiency
Suk See De Ravin et al.
SCIENCE TRANSLATIONAL MEDICINE (2016)
Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom
Neva C. Durand et al.
CELL SYSTEMS (2016)
Retroviral integration: Site matters: Mechanisms and consequences of retroviral integration site selection
Jonas Demeulemeester et al.
BIOESSAYS (2015)
Integrative analysis of 111 reference human epigenomes
Anshul Kundaje et al.
NATURE (2015)
Nuclear architecture dictates HIV-1 integration site selection
Bruna Marini et al.
NATURE (2015)
Chromatin organization at the nuclear pore favours HIV replication
Mickael Lelek et al.
NATURE COMMUNICATIONS (2015)
Quantitative Shearing Linear Amplification Polymerase Chain Reaction: An Improved Method for Quantifying Lentiviral Vector Insertion Sites in Transplanted Hematopoietic Cell Systems
Sheng Zhou et al.
HUMAN GENE THERAPY METHODS (2015)
Chimeric antigen receptor-redirected CD45RA-negative T cells have potent antileukemia and pathogen memory response without graft-versus-host activity
W. K. Chan et al.
LEUKEMIA (2015)
Adoptive Immunotherapy for Cancer or Viruses
Marcela V. Maus et al.
ANNUAL REVIEW OF IMMUNOLOGY, VOL 32 (2014)
circlize implements and enhances circular visualization in R
Zuguang Gu et al.
BIOINFORMATICS (2014)
bwtool: a tool for bigWig files
Andy Pohl et al.
BIOINFORMATICS (2014)
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
Suhas S. P. Rao et al.
CELL (2014)
Enhancers Are Major Targets for Murine Leukemia Virus Vector Integration
Suk See De Ravin et al.
JOURNAL OF VIROLOGY (2014)
Uncovering and Dissecting the Genotoxicity of Self-inactivating Lentiviral Vectors In Vivo
Daniela Cesana et al.
MOLECULAR THERAPY (2014)
CTCF: an architectural protein bridging genome topology and function
Chin-Tong Ong et al.
NATURE REVIEWS GENETICS (2014)
A Modified γ-Retrovirus Vector for X-Linked Severe Combined Immunodeficiency
S. Hacein-Bey-Abina et al.
NEW ENGLAND JOURNAL OF MEDICINE (2014)
Gene Therapy for Wiskott-Aldrich Syndrome-Long-Term Efficacy and Genotoxicity
Christian Joerg Braun et al.
SCIENCE TRANSLATIONAL MEDICINE (2014)
Chromatin Position Effects Assayed by Thousands of Reporters Integrated in Parallel
Waseem Akhtar et al.
CELL (2013)
Super-Enhancers in the Control of Cell Identity and Disease
Denes Hnisz et al.
CELL (2013)
Organization of the Mitotic Chromosome
Natalia Naumova et al.
SCIENCE (2013)
Lentiviral Hematopoietic Stem Cell Gene Therapy in Patients with Wiskott-Aldrich Syndrome
Alessandro Aiuti et al.
SCIENCE (2013)
Lentiviral Hematopoietic Stem Cell Gene Therapy Benefits Metachromatic Leukodystrophy
Alessandra Biffi et al.
SCIENCE (2013)
ChromHMM: automating chromatin-state discovery and characterization
Jason Ernst et al.
NATURE METHODS (2012)
Lentiviral vector common integration sites in preclinical models and a clinical trial reflect a benign integration bias and not oncogenic selection
Alessandra Biffi et al.
BLOOD (2011)
The host genomic environment of the provirus determines the abundance of HTLV-1-infected T-cell clones
Nicolas A. Gillet et al.
BLOOD (2011)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
A self-inactivating lentiviral vector for SCID-X1 gene therapy that does not activate LMO2 expression in human T cells
Sheng Zhou et al.
BLOOD (2010)
High-definition mapping of retroviral integration sites identifies active regulatory elements in human multipotent hematopoietic progenitors
Claudia Cattoglio et al.
BLOOD (2010)
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
Sven Heinz et al.
MOLECULAR CELL (2010)
Transfusion independence and HMGA2 activation after gene therapy of human β-thalassaemia
Marina Cavazzana-Calvo et al.
NATURE (2010)
Genomic instability and myelodysplasia with monosomy 7 consequent to EVI1 activation after gene therapy for chronic granulomatous disease
Stefan Stein et al.
NATURE MEDICINE (2010)
High-Definition Mapping of Retroviral Integration Sites Defines the Fate of Allogeneic T Cells After Donor Lymphocyte Infusion
Claudia Cattoglio et al.
PLOS ONE (2010)
Efficient construction of producer cell lines for a SIN lentiviral vector for SCID-X1 gene therapy by concatemeric array transfection
Robert E. Throm et al.
BLOOD (2009)
The genotoxic potential of retroviral vectors is strongly modulated by vector design and integration site selection in a mouse model of HSC gene therapy
Eugenio Montini et al.
JOURNAL OF CLINICAL INVESTIGATION (2009)
Gene Therapy for Immunodeficiency Due to Adenosine Deaminase Deficiency.
Alessandro Aiuti et al.
NEW ENGLAND JOURNAL OF MEDICINE (2009)
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
Erez Lieberman-Aiden et al.
SCIENCE (2009)
Insertional oncogenesis in 4 patients after retrovirus-mediated gene therapy of SCID-X1
Salima Hacein-Bey-Abina et al.
JOURNAL OF CLINICAL INVESTIGATION (2008)
Remodelling of the nuclear lamina during human cytomegalovirus infection: role of the viral proteins pUL50 and pUL53
Daria Camozzi et al.
JOURNAL OF GENERAL VIROLOGY (2008)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
HIV integration site selection: Analysis by massively parallel pyrosequencing reveals association with epigenetic modifications
Gary P. Wang et al.
GENOME RESEARCH (2007)
Comparison of HIV-derived lentiviral and MLV-based gammaretroviral vector integration sites in primate repopulating cells
Brian C. Beard et al.
MOLECULAR THERAPY (2007)
A role for LEDGF/p75 in targeting HIV DNA integration
A Ciuffi et al.
NATURE MEDICINE (2005)
Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences
RS Mitchell et al.
PLOS BIOLOGY (2004)
Distinct genomic integration of MLV and SIV vectors in primate hematopoietic stem and progenitor cells
P Hematti et al.
PLOS BIOLOGY (2004)
LMO2-associated clonal T cell proliferation in two patients after gene therapy for SCID-X1
S Hacein-Bey-Abina et al.
SCIENCE (2003)
HIV-1 integration in the human genome favors active genes and local hotspots
ARW Schröder et al.
CELL (2002)