Related references
Note: Only part of the references are listed.AtMCM10 promotes DNA replication-coupled nucleosome assembly in Arabidopsis
Xinjie Zhao et al.
JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2023)
Coordinated histone variant H2A.Z eviction and H3.3 deposition control plant thermomorphogenesis
Fengyue Zhao et al.
NEW PHYTOLOGIST (2023)
A REF6-dependent H3K27me3-depleted state facilitates gene activation during germination in Arabidopsis
Jie Pan et al.
JOURNAL OF GENETICS AND GENOMICS (2023)
Replication protein RPA2A regulates floral transition by cooperating with PRC2 in Arabidopsis
Xiaoling Zhang et al.
NEW PHYTOLOGIST (2022)
The histone H3.1 variant regulates TONSOKU-mediated DNA repair during replication
Hossein Davarinejad et al.
SCIENCE (2022)
One residue-one function
Frederic Berger
SCIENCE (2022)
Histone H3.3 deposition in seed is essential for the post-embryonic developmental competence in Arabidopsis
Ting Zhao et al.
NATURE COMMUNICATIONS (2022)
The transcriptional repressors VAL1 and VAL2 recruit PRC2 for genome-wide Polycomb silencing in Arabidopsis
Liangbing Yuan et al.
NUCLEIC ACIDS RESEARCH (2021)
The chromatin remodeler DDM1 prevents transposon mobility through deposition of histone variant H2A.W
Akihisa Osakabe et al.
NATURE CELL BIOLOGY (2021)
The histone variant H2A.W and linker histone H1 co-regulate heterochromatin accessibility and DNA methylation
Pierre Bourguet et al.
NATURE COMMUNICATIONS (2021)
Histone variants take center stage in shaping the epigenome
Michael Borg et al.
CURRENT OPINION IN PLANT BIOLOGY (2021)
Chromatin replication and epigenetic cell memory
Kathleen R. Stewart-Morgan et al.
NATURE CELL BIOLOGY (2020)
Twenty years of transposable element analysis in theArabidopsis thalianagenome
Hadi Quesneville
MOBILE DNA (2020)
Novel TONSL variants cause SPONASTRIME dysplasia and associate with spontaneous chromosome breaks, defective cell proliferation and apoptosis
Lucia Micale et al.
HUMAN MOLECULAR GENETICS (2020)
DNA polymerase epsilon is required for heterochromatin maintenance in Arabidopsis
Pierre Bourguet et al.
GENOME BIOLOGY (2020)
Replication-coupled histone H3.1 deposition determines nucleosome composition and heterochromatin dynamics during Arabidopsis seedling development
Matthias Benoit et al.
NEW PHYTOLOGIST (2019)
BRUSHY1/TONSOKU/MGOUN3 is required for heat stress memory
Krzysztof Brzezinka et al.
PLANT CELL AND ENVIRONMENT (2019)
ATXR5/6 Forms Alternative Protein Complexes with PCNA and the Nucleosome Core Particle
Hossein Davarinejad et al.
JOURNAL OF MOLECULAR BIOLOGY (2019)
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
Daehwan Kim et al.
NATURE BIOTECHNOLOGY (2019)
Hypomorphic Mutations in TONSL Cause SPONASTRIME Dysplasia
Hae Ryung Chang et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2019)
Bi-allelic Variants in TONSL Cause SPONASTRIME Dysplasia and a Spectrum of Skeletal Dysplasia Phenotypes
Lindsay C. Burrage et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2019)
fastp: an ultra-fast all-in-one FASTQ preprocessor
Shifu Chen et al.
BIOINFORMATICS (2018)
Telobox motifs recruit CLF/SWN-PRC2 for H3K27me3 deposition via TRB factors in Arabidopsis
Yue Zhou et al.
NATURE GENETICS (2018)
Chromatin domains rich in inheritance
Danny Reinberg et al.
SCIENCE (2018)
EBS is a bivalent histone reader that regulates floral phase transition in Arabidopsis
Zhenlin Yang et al.
NATURE GENETICS (2018)
Polycomb-mediated gene silencing by the BAH-EMF1 complex in plants
Zicong Li et al.
NATURE GENETICS (2018)
CGmapTools improves the precision of heterozygous SNV calls and supports allele-specific methylation detection and visualization in bisulfite-sequencing data
Weilong Guo et al.
BIOINFORMATICS (2018)
Cis and trans determinants of epigenetic silencing by Polycomb repressive complex 2 in Arabidopsis
Jun Xiao et al.
NATURE GENETICS (2017)
Ctf4-related protein recruits LHP1-PRC2 to maintain H3K27me3 levels in dividing cells in Arabidopsis thaliana
Yue Zhou et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
DNA replication-coupled histone modification maintains Polycomb gene silencing in plants
Danhua Jiang et al.
SCIENCE (2017)
Polycomb Group Proteins RING1A and RING1B Regulate the Vegetative Phase Transition in Arabidopsis
Jian Li et al.
FRONTIERS IN PLANT SCIENCE (2017)
Histone variants in plant transcriptional regulation
Danhua Jiang et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2017)
Compartmentalization of DNA Damage Response between Heterochromatin and Euchromatin Is Mediated by Distinct H2A Histone Variants
Zdravko J. Lorkovic et al.
CURRENT BIOLOGY (2017)
H4K20me0 marks post-replicative chromatin and recruits the TONSL-MMS22L DNA repair complex
Giulia Saredi et al.
NATURE (2016)
A two-state activation mechanism controls the histone methyltransferase Suv39h1
Manuel M. Mueller et al.
NATURE CHEMICAL BIOLOGY (2016)
A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis
Wenya Yuan et al.
NATURE GENETICS (2016)
Arabidopsis DNA polymerase ε recruits components of Polycomb repressor complex to mediate epigenetic gene silencing
Ivan del Olmo et al.
NUCLEIC ACIDS RESEARCH (2016)
Requirement for flap endonuclease 1 (FEN1) to maintain genomic stability and transcriptional gene silencing in Arabidopsis
Jixiang Zhang et al.
PLANT JOURNAL (2016)
Two distinct modes for propagation of histone PTMs across the cell cycle
Constance Alabert et al.
GENES & DEVELOPMENT (2015)
Analysis of the Histone H3.1 Interactome: A Suitable Chaperone for the Right Event
Eric I. Campos et al.
MOLECULAR CELL (2015)
Pathogen-secreted proteases activate a novel plant immune pathway
Zhenyu Cheng et al.
NATURE (2015)
DNA methylation pathways and their crosstalk with histone methylation
Jiamu Du et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2015)
PRC1 is taking the lead in PcG repression
Wiam Merini et al.
PLANT JOURNAL (2015)
The histone chaperone complex HIR maintains nucleosome occupancy and counterbalances impaired histone deposition in CAF-1 complex mutants
Celine Duc et al.
PLANT JOURNAL (2015)
Histone chaperone CAF-1 mediates repressive histone modifications to protect preimplantation mouse embryos from endogenous retrotransposons
Yuki Hatanaka et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
HTSeq-a Python framework to work with high-throughput sequencing data
Simon Anders et al.
BIOINFORMATICS (2015)
The Histone Variant H2A. W Defines Heterochromatin and Promotes Chromatin Condensation in Arabidopsis
Ramesh Yelagandula et al.
CELL (2014)
Antagonistic Roles for H3K36me3 and H3K27me3 in the Cold-Induced Epigenetic Switch at Arabidopsis FLC
Hongchun Yang et al.
CURRENT BIOLOGY (2014)
The putative PRC1 RING-finger protein AtRING1A regulates flowering through repressing MADS AFFECTING FLOWERING genes in Arabidopsis
Lisha Shen et al.
DEVELOPMENT (2014)
Photoperiodic Control of the Floral Transition through a Distinct Polycomb Repressive Complex
Yizhong Wang et al.
DEVELOPMENTAL CELL (2014)
Polycomb-Mediated Gene Silencing in Arabidopsis thaliana
Dong-Hwan Kim et al.
MOLECULES AND CELLS (2014)
Nascent chromatin capture proteomics determines chromatin dynamics during DNA replication and identifies unknown fork components
Constance Alabert et al.
NATURE CELL BIOLOGY (2014)
deepTools: a flexible platform for exploring deep-sequencing data
Fidel Ramirez et al.
NUCLEIC ACIDS RESEARCH (2014)
Selective Methylation of Histone H3 Variant H3.1 Regulates Heterochromatin Replication
Yannick Jacob et al.
SCIENCE (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data
Weilong Guo et al.
BMC GENOMICS (2013)
Comprehensive Analysis of Silencing Mutants Reveals Complex Regulation of the Arabidopsis Methylome
Hume Stroud et al.
CELL (2013)
The catalytic subunit of Arabidopsis DNA polymerase alpha ensures stable maintenance of histone modification
Youbong Hyun et al.
DEVELOPMENT (2013)
Arabidopsis MSI1 connects LHP1 to PRC2 complexes
Maria Derkacheva et al.
EMBO JOURNAL (2013)
Chromatin and DNA Replication
David M. MacAlpine et al.
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2013)
TrxG and PcG Proteins but Not Methylated Histones Remain Associated with DNA through Replication
Svetlana Petruk et al.
CELL (2012)
A model for mitotic inheritance of histone lysine methylation
Mo Xu et al.
EMBO REPORTS (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
The SET-Domain Protein SUVR5 Mediates H3K9me2 Deposition and Silencing at Stimulus Response Genes in a DNA Methylation-Independent Manner
Elena Caro et al.
PLOS GENETICS (2012)
Ectopic Gene Expression and Organogenesis in Arabidopsis Mutants Missing BRU1 Required for Genome Maintenance
Yusuke Ohno et al.
GENETICS (2011)
H3K36 Methylation Antagonizes PRC2-mediated H3K27 Methylation
Wen Yuan et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2011)
RNAi-based screening identifies the Mms22L-Nfkbil2 complex as a novel regulator of DNA replication in human cells
Wojciech Piwko et al.
EMBO JOURNAL (2010)
The MMS22L-TONSL Complex Mediates Recovery from Replication Stress and Homologous Recombination
Lara O'Donnell et al.
MOLECULAR CELL (2010)
Identification of the MMS22L-TONSL Complex that Promotes Homologous Recombination
Eris Duro et al.
MOLECULAR CELL (2010)
A Genome-wide Camptothecin Sensitivity Screen Identifies a Mammalian MMS22L-NFKBIL2 Complex Required for Genomic Stability
Brenda C. O'Connell et al.
MOLECULAR CELL (2010)
DNA Replication Factor C1 Mediates Genomic Stability and Transcriptional Gene Silencing in Arabidopsis
Qian Liu et al.
PLANT CELL (2010)
Arabidopsis homolog of the yeast TREX-2 mRNA export complex: components and anchoring nucleoporin
Qing Lu et al.
PLANT JOURNAL (2010)
EARLY IN SHORT DAYS 7 (ESD7) encodes the catalytic subunit of DNA polymerase epsilon and is required for flowering repression through a mechanism involving epigenetic gene silencing
Ivan del Olmo et al.
PLANT JOURNAL (2010)
Mutation in the catalytic subunit of DNA polymerase alpha influences transcriptional gene silencing and homologous recombination in Arabidopsis
Jun Liu et al.
PLANT JOURNAL (2010)
Restoring chromatin after replication: How new and old histone marks come together
Zuzana Jasencakova et al.
SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY (2010)
Polycomb Proteins Remain Bound to Chromatin and DNA during DNA Replication In Vitro
Nicole J. Francis et al.
CELL (2009)
The HP1α-CAF1-SetDB1-containing complex provides H3K9me1 for Suv39-mediated K9me3 in pericentric heterochromatin
Alejandra Loyola et al.
EMBO REPORTS (2009)
Role of the polycomb protein EED in the propagation of repressive histone marks
Raphael Margueron et al.
NATURE (2009)
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
Da Wei Huang et al.
NATURE PROTOCOLS (2009)
Epigenetic Regulation, Somatic Homologous Recombination, and Abscisic Acid Signaling Are Influenced by DNA Polymerase ε Mutation in Arabidopsis
Haibo Yin et al.
PLANT CELL (2009)
Polycomb Silencing of KNOX Genes Confines Shoot Stem Cell Niches in Arabidopsis
Lin Xu et al.
CURRENT BIOLOGY (2008)
A model for transmission of the H3K27me3 epigenetic mark
Klaus H. Hansen et al.
NATURE CELL BIOLOGY (2008)
Repression of FLOWERING LOCUS C and FLOWERING LOCUS T by the Arabidopsis Polycomb Repressive Complex 2 Components
Danhua Jiang et al.
PLOS ONE (2008)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
Regulation of replication fork progression through histone supply and demand
Anja Groth et al.
SCIENCE (2007)
MIDGET unravels functions of the Arabidopsis topoisomerase VI complex in DNA endoreduplication, chromatin condensation, and transcriptional silencing
Viktor Kirik et al.
PLANT CELL (2007)
INCURVATA2 encodes the catalytic subunit of DNA polymerase α and interacts with genes involved in chromatin-mediated cellular memory in Arabidopsis thaliana
Jose Maria Barrero et al.
PLANT CELL (2007)
Improved gateway binary vectors: High-performance vectors for creation of fusion constructs in Transgenic analysis of plants
Tsuyoshi Nakagawa et al.
BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY (2007)
Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27
Franziska Turck et al.
PLOS GENETICS (2007)
Two cell-cycle regulated SET-domain proteins interact with proliferating cell nuclear antigen (PCNA) in Arabidopsis
Cecile Raynaud et al.
PLANT JOURNAL (2006)
Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase
ML Ebbs et al.
PLANT CELL (2006)
H3 lysine 9 methylation is maintained on a transcribed inverted repeat by combined action of SUVH6 and SUVH4 methyltransferases
ML Ebbs et al.
MOLECULAR AND CELLULAR BIOLOGY (2005)
Arabidopsis RPA2:: A genetic link among transcriptional gene silencing, DNA repair, and DNA replication
T Elmayan et al.
CURRENT BIOLOGY (2005)
Mutations in a conserved replication protein suppress transcriptional gene silencing in a DNA-methylation-independent manner in Arabidopsis
A Kapoor et al.
CURRENT BIOLOGY (2005)
TONSOKU is expressed in S phase of the cell cycle and its defect delays cell cycle progression in Arabidopsis
T Suzuki et al.
PLANT AND CELL PHYSIOLOGY (2005)
BRU1, a novel link between responses to DNA damage and epigenetic gene silencing in Arabidopsis
S Takeda et al.
GENES & DEVELOPMENT (2004)
MGOUN3, an Arabidopsis gene with TetratricoPeptide-Repeat-related motifs, regulates meristem cellular organization
S Guyomarc'h et al.
JOURNAL OF EXPERIMENTAL BOTANY (2004)
Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis
H Tagami et al.
CELL (2004)
A novel Arabidopsis gene TONSOKU is required for proper cell arrangement in root and shoot apical meristems
T Suzuki et al.
PLANT JOURNAL (2004)
Arabidopsis TERMINAL FLOWER 2 gene encodes a heterochromatin protein 1 homolog and represses both FLOWERING LOCUS T to regulate flowering time and several floral homeotic genes
T Kotake et al.
PLANT AND CELL PHYSIOLOGY (2003)
FASCIATA genes for chromatin assembly factor-1 in Arabidopsis maintain the cellular organization of apical meristems
H Kaya et al.
CELL (2001)