Related references
Note: Only part of the references are listed.Co-cultivation of anaerobic fungi with Clostridium acetobutylicum bolsters butyrate and butanol production from cellulose and lignocellulose
Jennifer L. Brown et al.
JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY (2023)
Global soil microbiomes: A new frontline of biome-ecology research
Martti Vasar et al.
GLOBAL ECOLOGY AND BIOGEOGRAPHY (2022)
Rumen sampling methods bias bacterial communities observed
Jill Hagey et al.
PLOS ONE (2022)
Metabolic Enabling and Detoxification by Mammalian Gut Microbes
M. Denise Dearing et al.
ANNUAL REVIEW OF MICROBIOLOGY (2022)
GTDB-Tk v2: memory friendly classification with the genome taxonomy database
Pierre-Alain Chaumeil et al.
BIOINFORMATICS (2022)
Natural and after colon washing fecal samples: the two sides of the coin for investigating the human gut microbiome
Elisabetta Piancone et al.
SCIENTIFIC REPORTS (2022)
Simultaneous Metabarcoding and Quantification of Neocallimastigomycetes from Environmental Samples: Insights into Community Composition and Novel Lineages
Diana Young et al.
MICROORGANISMS (2022)
Co-cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates
Jennifer L. Brown et al.
BIOTECHNOLOGY FOR BIOFUELS (2021)
Non-destructive quantification of anaerobic gut fungi and methanogens in co-culture reveals increased fungal growth rate and changes in metabolic flux relative to mono-culture
Patrick A. Leggieri et al.
MICROBIAL CELL FACTORIES (2021)
Global donkey and mule populations: Figures and trends
Stuart L. Norris et al.
PLOS ONE (2021)
Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes
Xuefeng Peng et al.
NATURE MICROBIOLOGY (2021)
Vertebrate host phylogeny influences gut archaeal diversity
Nicholas D. Youngblut et al.
NATURE MICROBIOLOGY (2021)
Metabolic flexibility allows bacterial habitat generalists to become dominant in a frequently disturbed ecosystem
Ya-Jou Chen et al.
ISME JOURNAL (2021)
Anaerobic gut fungi are an untapped reservoir of natural products
Candice L. Swift et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)
BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes
Mose Manni et al.
MOLECULAR BIOLOGY AND EVOLUTION (2021)
Cocultivation of Anaerobic Fungi with Rumen Bacteria Establishes an Antagonistic Relationship
Candice L. Swift et al.
MBIO (2021)
Phylogenomics of a new fungal phylum reveals multiple waves of reductive evolution across Holomycota
Luis Javier Galindo et al.
NATURE COMMUNICATIONS (2021)
Unraveling differences in fecal microbiota stability in mammals: from high variable carnivores and consistently stable herbivores
Franziska Zoelzer et al.
ANIMAL MICROBIOME (2021)
In-depth Phylogenomic Analysis of Arbuscular Mycorrhizal Fungi Based on a Comprehensive Set of de novo Genome Assemblies
Merce Montoliu-Nerin et al.
FRONTIERS IN FUNGAL BIOLOGY (2021)
The systematics of the Cervidae: a total evidence approach
Nicola S. Heckeberg
PEERJ (2020)
Toward a Fully Resolved Fungal Tree of Life
Timothy Y. James et al.
ANNUAL REVIEW OF MICROBIOLOGY, VOL 74, 2020 (2020)
Assessing anaerobic gut fungal diversity in herbivores usingD1/D2large ribosomal subunit sequencing and multi-year isolation
Radwa A. Hanafy et al.
ENVIRONMENTAL MICROBIOLOGY (2020)
Anaerobic Fungi: Past, Present, and Future
Matthias Hess et al.
FRONTIERS IN MICROBIOLOGY (2020)
Combined Genomic, Transcriptomic, Proteomic, and Physiological Characterization of the Growth of Pecoramyces sp. F1 in Monoculture and Co-culture With a Syntrophic Methanogen
Yuanfei Li et al.
FRONTIERS IN MICROBIOLOGY (2019)
Horizontal Gene Transfer as an Indispensable Driver for Evolution of Neocallimastigomycota into a Distinct Gut-Dwelling Fungal Lineage
Chelsea L. Murphy et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2019)
A general framework for quantitatively assessing ecological stochasticity
Daliang Ning et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Covariation of diet and gut microbiome in African megafauna
Tyler R. Kartzinel et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Assessment of the Accuracy of High-Throughput Sequencing of the ITS1 Region of Neocallimastigomycota for Community Composition Analysis
Joan E. Edwards et al.
FRONTIERS IN MICROBIOLOGY (2019)
Anaerobic fungal communities differ along the horse digestive tract
Erica Mura et al.
FUNGAL BIOLOGY (2019)
Lignocellulosic Biomass: Understanding Recalcitrance and Predicting Hydrolysis
Aya Zoghlami et al.
FRONTIERS IN CHEMISTRY (2019)
Enzymes of early-diverging, zoosporic fungi
Lene Lange et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2019)
The use of extracellular DNA as a proxy for specific microbial activity
Magdalena Nagler et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2018)
A phylogenetic census of global diversity of gut anaerobic fungi and a new taxonomic framework
Shyam Sundar Paul et al.
FUNGAL DIVERSITY (2018)
Genome-reconstruction for eukaryotes from complex natural microbial communities
Patrick T. West et al.
GENOME RESEARCH (2018)
The biomass distribution on Earth
Yinon M. Bar-On et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
Andrew Rambaut et al.
SYSTEMATIC BIOLOGY (2018)
Application of Transcriptomics to Compare the Carbohydrate Active Enzymes That Are Expressed by Diverse Genera of Anaerobic Fungi to Degrade Plant Cell Wall Carbohydrates
Robert J. Gruninger et al.
FRONTIERS IN MICROBIOLOGY (2018)
The biotechnological potential of anaerobic fungi on fiber degradation and methane production
Yanfen Cheng et al.
WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY (2018)
Is Host Filtering the Main Driver of Phylosymbiosis across the Tree of Life?
Florent Mazel et al.
MSYSTEMS (2018)
Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10
Marc A. Suchard et al.
VIRUS EVOLUTION (2018)
Where less may be more: how the rare biosphere pulls ecosystems strings
Alexandre Jousset et al.
ISME JOURNAL (2017)
Stochastic Community Assembly: Does It Matter in Microbial Ecology?
Jizhong Zhou et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2017)
A communal catalogue reveals Earth's multiscale microbial diversity
Luke R. Thompson et al.
NATURE (2017)
A genome Tree of Life for the Fungi kingdom
JaeJin Choi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Core fecal microbiota of domesticated herbivorous ruminant, hindgut fermenters, and monogastric animals
Michelle M. O' Donnell et al.
MICROBIOLOGYOPEN (2017)
A parts list for fungal cellulosomes revealed by comparative genomics
Charles H. Haitjema et al.
NATURE MICROBIOLOGY (2017)
Transcriptomic characterization of Caecomyces churrovis: a novel, non-rhizoid-forming lignocellulolytic anaerobic fungus
John K. Henske et al.
BIOTECHNOLOGY FOR BIOFUELS (2017)
Development and physiology of the rumen and the lower gut: Targets for improving gut health
Michael A. Steele et al.
JOURNAL OF DAIRY SCIENCE (2016)
A fast and reliable procedure for spore collection from anaerobic fungi: Application for RNA uptake and long-term storage of isolates
Shelby Calkins et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2016)
Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes
Kevin V. Solomon et al.
SCIENCE (2016)
A multifunctional GH39 glycoside hydrolase from the anaerobic gut fungus Orpinomyces sp strain CIA
Jessica M. Morrison et al.
PEERJ (2016)
Oral Samples as Non-Invasive Proxies for Assessing the Composition of the Rumen Microbial Community
Ilma Tapio et al.
PLOS ONE (2016)
Defined enzyme cocktail from the anaerobic fungus Orpinomyces sp strain C1A effectively releases sugars from pretreated corn stover and switchgrass
Jessica M. Morrison et al.
SCIENTIFIC REPORTS (2016)
Buccal Swabbing as a Noninvasive Method To Determine Bacterial, Archaeal, and Eukaryotic Microbial Community Structures in the Rumen
Sandra Kittelmann et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)
Ecology and exploration of the rare biosphere
Michael D. J. Lynch et al.
NATURE REVIEWS MICROBIOLOGY (2015)
Structure and function of the global ocean microbiome
Shinichi Sunagawa et al.
SCIENCE (2015)
The Hologenome Concept: Helpful or Hollow?
Nancy A. Moran et al.
PLOS BIOLOGY (2015)
Estimating and mapping ecological processes influencing microbial community assembly
James C. Stegen et al.
FRONTIERS IN MICROBIOLOGY (2015)
Response of the rare biosphere to environmental stressors in a highly diverse ecosystem (Zodletone spring, OK, USA)
Suzanne Coveley et al.
PEERJ (2015)
The Earth Microbiome project: successes and aspirations
Jack A. Gilbert et al.
BMC BIOLOGY (2014)
Body mass evolution and diversification within horses (family Equidae)
Lauren Shoemaker et al.
ECOLOGY LETTERS (2014)
Anaerobic fungi (phylum Neocallimastigomycota): advances in understanding their taxonomy, life cycle, ecology, role and biotechnological potential
Robert J. Gruninger et al.
FEMS MICROBIOLOGY ECOLOGY (2014)
Binning metagenomic contigs by coverage and composition
Johannes Alneberg et al.
NATURE METHODS (2014)
Conditionally Rare Taxa Disproportionately Contribute to Temporal Changes in Microbial Diversity
Ashley Shade et al.
MBIO (2014)
The Genome of the Anaerobic Fungus Orpinomyces sp Strain C1A Reveals the Unique Evolutionary History of a Remarkable Plant Biomass Degrader
Noha H. Youssef et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
PERMANOVA, ANOSIM, and the Mantel test in the face of heterogeneous dispersions: What null hypothesis are you testing?
Marti J. Anderson et al.
ECOLOGICAL MONOGRAPHS (2013)
Enzymatic characteristics of crude feruloyl and acetyl esterases of rumen fungus Neocallimastix sp YAK11 isolated from yak (Bos grunniens)
Y. C. Cao et al.
JOURNAL OF ANIMAL PHYSIOLOGY AND ANIMAL NUTRITION (2013)
Simultaneous Amplicon Sequencing to Explore Co-Occurrence Patterns of Bacterial, Archaeal and Eukaryotic Microorganisms in Rumen Microbial Communities
Sandra Kittelmann et al.
PLOS ONE (2013)
Keeping horses in groups: A review
Elke Hartmann et al.
APPLIED ANIMAL BEHAVIOUR SCIENCE (2012)
CD-HIT: accelerated for clustering the next-generation sequencing data
Limin Fu et al.
BIOINFORMATICS (2012)
Evaluating expression and catalytic activity of anaerobic fungal fibrolytic enzymes native topiromyces sp E2 inSaccharomyces cerevisiae
Michelle A. O'Malley et al.
ENVIRONMENTAL PROGRESS & SUSTAINABLE ENERGY (2012)
A comparison of the microbiome and the metabolome of different regions of the equine hindgut
Kirsty Dougal et al.
FEMS MICROBIOLOGY ECOLOGY (2012)
POLYSACCHARIDASE AND GLYCOSIDASE PRODUCTION OF AVICEL GROWN RUMEN FUNGUS ORPINOMYCES SP GMLF5
U. Comlekcioglu et al.
ACTA BIOLOGICA HUNGARICA (2010)
Xylanases of Anaerobic Fungus Anaeromyces mucronatus
Z. Novotna et al.
FOLIA MICROBIOLOGICA (2010)
Phylogenetic diversity and community structure of anaerobic gut fungi (phylum Neocallimastigomycota) in ruminant and non-ruminant herbivores
Audra S. Liggenstoffer et al.
ISME JOURNAL (2010)
Invited review: Ruminant ecology and evolution: Perspectives useful to ruminant livestock research and production
T. J. Hackmann et al.
JOURNAL OF DAIRY SCIENCE (2010)
Correlation analysis of dissimilarity matrices
Sarah C. Goslee
PLANT ECOLOGY (2010)
Procrustes methods
John C. Gower
WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL STATISTICS (2010)
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
Salvador Capella-Gutierrez et al.
BIOINFORMATICS (2009)
Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies
Yong Wang et al.
PLOS ONE (2009)
Dynamics of initial colonization of nonconserved perennial ryegrass by anaerobic fungi in the bovine rumen
Joan E. Edwards et al.
FEMS MICROBIOLOGY ECOLOGY (2008)
A serpin in the cellulosome of the anaerobic fungus Piromyces sp strain E2
Peter J. M. Steenbakkers et al.
MYCOLOGICAL RESEARCH (2008)
Isolation of Mycobacterium avium subspecies paratuberculosis from non-ruminant wildlife living in the sheds and on the pastures of Greek sheep and goats
M. Florou et al.
EPIDEMIOLOGY AND INFECTION (2008)
β-glucosidase in cellulosome of the anaerobic fungus Piromyces sp strain E2 is a family 3 glycoside hydrolase
PJM Steenbakkers et al.
BIOCHEMICAL JOURNAL (2003)
Mutualistic fermentative digestion in the gastrointestinal tract: Diversity and evolution
RI Mackie
INTEGRATIVE AND COMPARATIVE BIOLOGY (2002)
Molecular insights into the evolution of the family Bovidae: A nuclear DNA perspective
CA Matthee et al.
MOLECULAR BIOLOGY AND EVOLUTION (2001)
Molecular dating and biogeography of the early placental mammal radiation
E Eizirik et al.
JOURNAL OF HEREDITY (2001)