Unveiling hidden diversity of Oecomys (Rodentia: Cricetidae) from Brazilian Central Amazonia: description of a new species and new lineages

The arboreal rice rat of the genus Oecomys Thomas, 1906 is one of the most speciose genera of the subfamily Sigmodontinae, with 19 species currently recognized and occurring from eastern Panama to northern Argentina, Paraguay, and in northern, central and eastern Brazil. Herein we describe a new species using an integrative approach based on molecular, morphological, and morphometric data. We used in our assessment recently collected specimens from the states of Para and Rondonia, one of the most deforested regions in Brazil. We examined 51 specimens of Oecomys from museum collections including name-bearing types from most of the distributional range of the genus. We also sequenced 32 specimens of Oecomys, and for the molecular analyses, we used the mitochondrial marker Cytochrome b and the nuclear marker intron 7 of beta-fibrinogen. Our mitochondrial marker results recovered a strongly supported clade composed of two divergent clades (3.78%), one including lineages of O. bicolor and O. cleberi, and the other clade representing the new species. The topology of concatenated mitochondrial and nuclear data also recovered Oecomys sp. nov. as a sister lineage of the O. bicolor and O. cleberi clade. Also, both markers recovered new lineages from the O. bicolor and O. cleberi species group. The new species can be discriminated from other Oecomys species by pelage colour and craniodental characters, such as absent or small mastoid fenestra, and the presence of alisphenoid strut, small subsquamosal fenestra, presence of sphenopalatine vacuities, and presence of accessory loph of M1 and M2 paracones. The new species occurs exclusively in the Rondonia centre of endemism, delimited by the rivers Amazon to the north, Tapajos to the east, and Madeira to the west. The description of this new Oecomys increases the diversity, and also contributes to elevate Amazonian Sigmodontinae species richness and endemism in this still poorly known biome.

Automated summary

This study describes a new species of the Oecomys genus using an integrative approach, and reveals new lineages from known species. The new species is primarily found in the Rondonia region of Brazil and contributes to the diversity and endemism of Sigmodontinae species in the Amazon biome.