Related references
Note: Only part of the references are listed.Metagenomics and metatranscriptomics reveal broadly distributed, active, novel methanotrophs in the Gulf of Mexico hypoxic zone and in the marine water column
Kathryn L. Howe et al.
FEMS MICROBIOLOGY ECOLOGY (2023)
Diversity of Thermophilic Prokaryotes Inhabiting Russian Natural Hot Springs
T. Kochetkova et al.
MICROBIOLOGY (2022)
Verrucomicrobiota are specialist consumers of sulfated methyl pentoses during diatom blooms
Luis H. Orellana et al.
ISME JOURNAL (2022)
GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy
Donovan H. Parks et al.
NUCLEIC ACIDS RESEARCH (2022)
Fontivita pretiosa gen. nov., sp. nov., a thermophilic planctomycete of the order Tepidisphaerales from a hot spring of Baikal lake region
Olga A. Podosokorskaya et al.
SYSTEMATIC AND APPLIED MICROBIOLOGY (2022)
Peat-Inhabiting Verrucomicrobia of the Order Methylacidiphilales Do Not Possess Methanotrophic Capabilities
Svetlana N. Dedysh et al.
MICROORGANISMS (2021)
Pelomicrobium methylotrophicum gen. nov., sp. nov. a moderately thermophilic, facultatively anaerobic, lithoautotrophic and methylotrophic bacterium isolated from a terrestrial mud volcano
G. B. Slobodkina et al.
EXTREMOPHILES (2020)
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
Bui Quang Minh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
Verrucomicrobia use hundreds of enzymes to digest the algal polysaccharide fucoidan
Andreas Sichert et al.
NATURE MICROBIOLOGY (2020)
A complete domain-to-species taxonomy for Bacteria and Archaea
Donovan H. Parks et al.
NATURE BIOTECHNOLOGY (2020)
Closely Located but Totally Distinct: Highly Contrasting Prokaryotic Diversity Patterns in Raised Bogs and Eutrophic Fens
Anastasia A. Ivanova et al.
MICROORGANISMS (2020)
Tenuifilum thalassicum gen. nov., sp. nov., a novel moderate thermophilic anaerobic bacterium from a Kunashir Island shallow hot spring representing a new family Tenuifilaceae fam. nov. in the class Bacteroidia
Olga A. Podosokorskaya et al.
SYSTEMATIC AND APPLIED MICROBIOLOGY (2020)
Draft Genome Sequence of Limisphaera ngatamarikiensis NGM72.4T, a Moderately Alkaliphilic Thermophile Belonging to the Class Verrucomicrobiae
Carlo R. Carere et al.
MICROBIOLOGY RESOURCE ANNOUNCEMENTS (2020)
Limited effect of planting transgenic rice on the soil microbiome studied by continuous 13CO2 labeling combined with high-throughput sequencing
Juan Wang et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2019)
Tautonia sociabilis gen. nov., sp. nov., a novel thermotolerant planctomycete, isolated from a 4000 m deep subterranean habitat
Olga L. Kovaleva et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2019)
The Pfam protein families database in 2019
Sara El-Gebali et al.
NUCLEIC ACIDS RESEARCH (2019)
UFBoot2: Improving the Ultrafast Bootstrap Approximation
Diep Thi Hoang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
dbCAN2: a meta server for automated carbohydrate-active enzyme annotation
Han Zhang et al.
NUCLEIC ACIDS RESEARCH (2018)
The reconstruction of 2,631 draft metagenome-assembled genomes from the global oceans
Benjamin J. Tully et al.
SCIENTIFIC DATA (2018)
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
Donovan H. Parks et al.
NATURE BIOTECHNOLOGY (2018)
Thermodesulfobium acidiphilum sp nov., a thermoacidophilic, sulfate-reducing, chemoautotrophic bacterium from a thermal site
Evgenii N. Frolov et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2017)
ModelFinder: fast model selection for accurate phylogenetic estimates
Subha Kalyaanamoorthy et al.
NATURE METHODS (2017)
Sugar Metabolism of the First Thermophilic Planctomycete Thermogutta terrifontis: Comparative Genomic and Transcriptomic Approaches
Alexander G. Elcheninov et al.
FRONTIERS IN MICROBIOLOGY (2017)
NCBI prokaryotic genome annotation pipeline
Tatiana Tatusova et al.
NUCLEIC ACIDS RESEARCH (2016)
Limisphaera ngatamarikiensis gen. nov., sp nov., a thermophilic, pink-pigmented coccus isolated from subaqueous mud of a geothermal hotspring
Heike Anders et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2015)
Fast and sensitive protein alignment using DIAMOND
Benjamin Buchfink et al.
NATURE METHODS (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Enhanced whole genome sequence and annotation of Clostridium stercorarium DSM8532T using RNA-seq transcriptomics and high-throughput proteomics
John J. Schellenberg et al.
BMC GENOMICS (2014)
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
Pablo Yarza et al.
NATURE REVIEWS MICROBIOLOGY (2014)
Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions
Jaina Mistry et al.
NUCLEIC ACIDS RESEARCH (2013)
Genome Sequence of Pedosphaera parvula Ellin514, an Aerobic Verrucomicrobial Isolate from Pasture Soil
Ravi Kant et al.
JOURNAL OF BACTERIOLOGY (2011)
Environmental, genomic and taxonomic perspectives on methanotrophic Verrucomicrobia
Huub J. M. Op den Camp et al.
ENVIRONMENTAL MICROBIOLOGY REPORTS (2009)
Characterization of the pyrophosphate-dependent 6-phosphofructokinase from Methylococcus capsulatus Bath
Alexander S. Reshetnikov et al.
FEMS MICROBIOLOGY LETTERS (2008)
Culture-dependent and -independent characterization of microbial communities associated with a shallow submarine hydrothermal system occurring within a coral reef off Taketomi Island, Japan
Hisako Hirayama et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative
Maria Anisimova et al.
SYSTEMATIC BIOLOGY (2006)
Microbiological investigation of methane- and hydrocarbon-discharging mud volcanoes in the Carpathian Mountains, Romania
K Alain et al.
ENVIRONMENTAL MICROBIOLOGY (2006)
Detection and cultivation of soil verrucomicrobia
P Sangwan et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)
Comparison of bacterial diversity along the human intestinal tract by direct cloning and sequencing of 16S rRNA genes
M Wang et al.
FEMS MICROBIOLOGY ECOLOGY (2005)
Diversity and abundance of Bacteria and Archaea in the Bor Khlueng hot spring in Thailand
P Kanokratana et al.
JOURNAL OF BASIC MICROBIOLOGY (2004)
Depth distribution of microbial diversity in Mono Lake, a meromictic soda lake in California
SB Humayoun et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)