A genome-wide genetic screen uncovers determinants of human pigmentation

Skin color, one of the most diverse human traits, is determined by the quantity, type, and distribution of melanin. In this study, we leveraged the light-scattering properties of melanin to conduct a genome-wide screen for regulators of melanogenesis. We identified 169 functionally diverse genes that converge on melanosome biogenesis, endosomal transport, and gene regulation, of which 135 represented previously unknown associations with pigmentation. In agreement with their melanin-promoting function, the majority of screen hits were up-regulated in melanocytes from darkly pigmented individuals. We further unraveled functions of KLF6 as a transcription factor that regulates melanosome maturation and pigmentation in vivo, and of the endosomal trafficking protein COMMD3 in modulating melanosomal pH. Our study reveals a plethora ofmelanin-promoting genes, with broad implications for human variation, cell biology, and medicine.

Automated summary

This study identified 169 genes associated with skin pigmentation, 135 of which were previously unknown. These genes are up-regulated in melanocytes from darkly pigmented individuals and are involved in melanosome biogenesis, endosomal transport, and gene regulation. The study also revealed the functions of KLF6 and COMMD3 in melanosome maturation and melanosomal pH regulation.