Related references
Note: Only part of the references are listed.Structures and functions of coronavirus replication-transcription complexes and their relevance for SARS-CoV-2 drug design
Brandon Malone et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2022)
Mechanisms of SARS-CoV-2 entry into cells
Cody B. Jackson et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2022)
AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models
Mihaly Varadi et al.
NUCLEIC ACIDS RESEARCH (2022)
Molecular Virology of SARS-CoV-2 and Related Coronaviruses
Yu-An Kung et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2022)
Structure and activity of human TMPRSS2 protease implicated in SARS-CoV-2 activation
Bryan J. Fraser et al.
NATURE CHEMICAL BIOLOGY (2022)
Human coronaviruses: Origin, host and receptor
Guolu Tang et al.
JOURNAL OF CLINICAL VIROLOGY (2022)
Characteristics of SARS-CoV-2 and COVID-19
Ben Hu et al.
NATURE REVIEWS MICROBIOLOGY (2021)
Applying and improving AlphaFold at CASP14
John Jumper et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2021)
Highly accurate protein structure prediction with AlphaFold
John Jumper et al.
NATURE (2021)
Nickel import and export in the human pathogen Helicobacter pylori, perspectives from molecular modelling
Giulia Camporesi et al.
METALLOMICS (2021)
A Blueprint for High Affinity SARS-CoV-2 Mpro Inhibitors from Activity-Based Compound Library Screening Guided by Analysis of Protein Dynamics
Jonas Gossen et al.
ACS PHARMACOLOGY & TRANSLATIONAL SCIENCE (2021)
Molecular mechanism of inhibiting the SARS-CoV-2 cell entry facilitator TMPRSS2 with camostat and nafamostat
Tim Hempel et al.
CHEMICAL SCIENCE (2021)
The species Severe acute respiratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2
Alexander E. Gorbalenya et al.
NATURE MICROBIOLOGY (2020)
Inhibition of SARS-CoV-2 entry through the ACE2/TMPRSS2 pathway: a promising approach for uncovering early COVID-19 drug therapies
Georgia Ragia et al.
EUROPEAN JOURNAL OF CLINICAL PHARMACOLOGY (2020)
The molecular virology of coronaviruses
Ella Hartenian et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2020)
CHARMM-GUI supports the Amber force fields
Jumin Lee et al.
JOURNAL OF CHEMICAL PHYSICS (2020)
Candidate drugs against SARS-CoV-2 and COVID-19
Dwight L. McKee et al.
PHARMACOLOGICAL RESEARCH (2020)
Mechanistic insights into metal ions transit through threefold ferritin channel
Balasubramanian Chandramouli et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS (2019)
Smyd2 conformational changes in response to p53 binding: role of the C-terminal domain
Balasubramanian Chandramouli et al.
MOLECULAR ONCOLOGY (2019)
Tailor-made computational protocols for precise characterization of small biological building blocks using QM and MM approaches
Balasubramanian Chandramouli et al.
BIOPOLYMERS (2018)
CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field
Jumin Lee et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2016)
MDTraj: A Modern Open Library for the Analysis of Molecular Dynamics Trajectories
Robert T. McGibbon et al.
BIOPHYSICAL JOURNAL (2015)
Androgen-Induced TMPRSS2 Activates Matriptase and Promotes Extracellular Matrix Degradation, Prostate Cancer Cell Invasion, Tumor Growth, and Metastasis
Chun-Jung Ko et al.
CANCER RESEARCH (2015)
Matriptase and MET are prominently expressed at the site of bone metastasis in renal cell carcinoma: immunohistochemical analysis
Shoichiro Mukai et al.
HUMAN CELL (2015)
Lipid14: The Amber Lipid Force Field
Callum J. Dickson et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2014)
CHARMM-GUI Membrane Builder Toward Realistic Biological Membrane Simulations
Emilia L. Wu et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2014)
TMPRSS2 and ADAM17 Cleave ACE2 Differentially and Only Proteolysis by TMPRSS2 Augments Entry Driven by the Severe Acute Respiratory Syndrome Coronavirus Spike Protein
Adeline Heurich et al.
JOURNAL OF VIROLOGY (2014)
MDpocket: open-source cavity detection and characterization on molecular dynamics trajectories
Peter Schmidtke et al.
BIOINFORMATICS (2011)
Overexpression of TMPRSS4 in non-small cell lung cancer is associated with poor prognosis in patients with squamous histology
L. Larzabal et al.
BRITISH JOURNAL OF CANCER (2011)
Type II Transmembrane Serine Protease (TTSP) deregulation in cancer
Siobhan L. Webb et al.
FRONTIERS IN BIOSCIENCE-LANDMARK (2011)
Software News and Updates MDAnalysis: A Toolkit for the Analysis of Molecular Dynamics Simulations
Naveen Michaud-Agrawal et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2011)
Mechanisms of Macromolecular Protease Inhibitors
Christopher J. Farady et al.
CHEMBIOCHEM (2010)
Efficient Activation of the Severe Acute Respiratory Syndrome Coronavirus Spike Protein by the Transmembrane Protease TMPRSS2
Shutoku Matsuyama et al.
JOURNAL OF VIROLOGY (2010)
Epithelial Integrity Is Maintained by a Matriptase-Dependent Proteolytic Pathway
Karin List et al.
AMERICAN JOURNAL OF PATHOLOGY (2009)
Type II Transmembrane Serine Proteases
Thomas H. Bugge et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2009)
CHARMM: The Biomolecular Simulation Program
B. R. Brooks et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2009)
Structure and mechanism of intramembrane protease
Ya Ha
SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY (2009)
Software news and updates - CHARNIM-GUI: A web-based grraphical user interface for CHARMM
Sunhwan Jo et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2008)
Canonical sampling through velocity rescaling
Giovanni Bussi et al.
JOURNAL OF CHEMICAL PHYSICS (2007)
Comparison of multiple amber force fields and development of improved protein backbone parameters
Viktor Hornak et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)
Proteolytic activation of influenza viruses by serine proteases TMPRSS2 and HAT from human airway epithelium
Eva Böttcher et al.
JOURNAL OF VIROLOGY (2006)
Gaussian-weighted RMSD superposition of proteins: A structural comparison for flexible proteins and predicted protein structures
Kelly L. Damm et al.
BIOPHYSICAL JOURNAL (2006)
GROMACS: Fast, flexible, and free
D Van der Spoel et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2005)
UCSF chimera - A visualization system for exploratory research and analysis
EF Pettersen et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)
GROMACS 3.0: a package for molecular simulation and trajectory analysis
E Lindahl et al.
JOURNAL OF MOLECULAR MODELING (2001)