4.7 Article

A comprehensive investigation of the regulatory roles of OsERF096, an AP2/ERF transcription factor, in rice cold stress response

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

CsAP2-09 confers resistance against citrus bacterial canker by regulating CsGH3.1L-mediated phytohormone biosynthesis

Jia Fu et al.

Summary: CsAP2-09 positively regulated resistance to citrus bacterial canker (CBC) by directly binding to the promoter of CsGH3.1L, activating its expression and modulating the biosynthesis of IAA, SA, and ethylene. This study reveals the potential value of manipulating CsAP2-09 and CsGH3.1L in breeding CBC-resistant citrus.

INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES (2023)

Review Plant Sciences

Crosstalk and trade-offs: Plant responses to climate change-associated abiotic and biotic stresses

Courtney P. P. Leisner et al.

Summary: As sessile organisms, plants face constant challenges from a changing environment, including fluctuations in temperature, water availability, light levels, and changes in atmospheric constituents such as CO2 and O3. They also experience biotic stress from plant pathogens and herbivores. Increased atmospheric CO2 levels and climate change are impacting plant growth environments and the prevalence and virulence of plant pathogens. Closing the knowledge gap in plant responses to biotic and abiotic stress is crucial for developing climate resilient crops in the future.

PLANT CELL AND ENVIRONMENT (2023)

Article Plant Sciences

Comparative transcriptomics and co-expression networks reveal cultivar-specific molecular signatures associated with reproductive-stage cold stress in rice

Yuan Niu et al.

Summary: The resistance of Huaidao5 is due to the high constitutive expression of tolerance genes, while that of Huaidao9 is derived from the induced resistance to cold in flag leaves and panicles. Through transcriptome analysis, we identified differentially expressed genes and co-expression networks associated with cold tolerance in reproductive-stage rice. Our findings provide insights into the mechanisms of cold tolerance in rice and identify candidate genes related to cold response and tolerance.

PLANT CELL REPORTS (2023)

Article Agriculture, Multidisciplinary

Integrated Physiological, Transcriptomic, and Metabolomic Analysis Reveals the Mechanism of Guvermectin Promoting Seed Germination in Direct-Seeded Rice under Chilling Stress

Chongxi Liu et al.

Summary: Rice direct seeding technology has the potential to save labor and water compared to traditional transplanting, but poor emergence and seedling growth caused by chill stress hinders its wide-scale adoption. This study found that seed-soaking with the plant growth regulator guvermectin (GV) effectively improved rice seed germination and seedling growth under chilling stress. Field trials showed that GV treatment enhanced emergence rate, seedling growth, panicle number per plant, and grain number per panicle, resulting in increased yield of direct-seeded rice. Physiological, transcriptomic, and metabolomic analyses revealed that GV improved seed germination under chilling stress by increasing enzyme activity, soluble sugar and protein contents, glutathione and flavonoid biosynthesis, as well as activating transcription factors. Inhibition of the abscisic acid signaling pathway was also observed. Overall, these findings demonstrate the potential of seed-soaking with GV to improve seedling establishment and yield of direct-seeded rice, even under chilling stress.

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2023)

Article Biochemistry & Molecular Biology

ERF Transcription Factor OsBIERF3 Positively Contributes to Immunity against Fungal and Bacterial Diseases but Negatively Regulates Cold Tolerance in Rice

Yongbo Hong et al.

Summary: OsBIERF3 gene contributes positively to immunity and resistance against pathogens in rice, while negatively regulates cold stress tolerance.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2022)

Article Agronomy

Characterization of wavy root 1, an agravitropism allele, reveals the functions of OsPIN2 in fine regulation of auxin transport and distribution and in ABA biosynthesis and response in rice (Oryza sativa L.)

Wenqiang Li et al.

Summary: Gravity plays a role in root system architecture, and the loss of function of the OsPIN2 gene in the rice wavy root 1 (war1) mutant leads to altered root architecture, disrupted auxin transport, decreased amyloplast sedimentation, and impaired ABA signaling. OsPIN2 not only regulates root gravitropism through auxin transport, but also affects seed germination and root development through ABA signaling.

CROP JOURNAL (2022)

Article Plant Sciences

Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling

Mingzhe Sun et al.

Summary: miR1320, a rice species-specific microRNA, regulates cold stress tolerance in rice by targeting the ethylene-responsive transcription factor OsERF096 and repressing the JA-mediated cold signaling pathway. The study provides insights into the regulatory mechanism of miR1320 and OsERF096 under cold stress and demonstrates the impact of OsERF096 on hormone content and signaling pathways.

PLANT PHYSIOLOGY (2022)

Article Biochemistry & Molecular Biology

PpIAA1 and PpERF4 form a positive feedback loop to regulate peach fruit ripening by integrating auxin and ethylene signals

Xiaobei Wang et al.

Summary: This study reveals that PpIAA1 and PpERF4 play crucial roles in peach fruit ripening by forming a complex and enhancing the expression of genes related to ethylene biosynthesis and fruit softening.

PLANT SCIENCE (2021)

Article Agronomy

Overexpression of a Novel ERF-X-Type Transcription Factor, OsERF106MZ, Reduces Shoot Growth and Tolerance to Salinity Stress in Rice

Hung-Chi Chen et al.

Summary: This study identified a novel OsERF106MZ gene in rice with a negative regulatory role in abiotic stress responses, including growth retardation, disruption of ion homeostasis, and modulation of stress-responsive gene expression.
Review Plant Sciences

AP2/ERF, an important cold stress-related transcription factor family in plants: A review

Faujiah Nurhasanah Ritonga et al.

Summary: Research has shown that increasing cold tolerance in plants can be achieved through the regulation of transcription factors. Different TF families interact with each other to collectively enhance plants' ability to adapt to cold stress.

PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS (2021)

Article Plant Sciences

Suppression of rice miR168 improves yield, flowering time and immunity

He Wang et al.

Summary: The study shows that suppressing miR168 can improve rice yield, shorten flowering time, and enhance immunity to rice blast disease, as validated through field trials.

NATURE PLANTS (2021)

Article Multidisciplinary Sciences

IPyA glucosylation mediates light and temperature signaling to regulate auxin-dependent hypocotyl elongation in Arabidopsis

Lu Chen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Biochemistry & Molecular Biology

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

Chengjie Chen et al.

MOLECULAR PLANT (2020)

Article Biochemistry & Molecular Biology

Aux/IAA14 Regulates microRNA-Mediated Cold Stress Response in Arabidopsis Roots

Mohammad Aslam et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2020)

Review Biochemistry & Molecular Biology

Jasmonic Acid Signaling Pathway in Plants

Jingjun Ruan et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)

Review Biochemistry & Molecular Biology

Aux/IAA Gene Family in Plants: Molecular Structure, Regulation, and Function

Jie Luo et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2018)

Editorial Material Biology

COLD1: a cold sensor in rice

Shi YiTing et al.

SCIENCE CHINA-LIFE SCIENCES (2015)

Article Plant Sciences

Characterization of OsDREB6 responsive to osmotic and cold stresses in rice

Ya-Guang Ke et al.

JOURNAL OF PLANT BIOLOGY (2014)

Review Plant Sciences

Auxin: a regulator of cold stress response

Abidur Rahman

PHYSIOLOGIA PLANTARUM (2013)

Article Biochemistry & Molecular Biology

OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors

Tania S. Serra et al.

PLANT MOLECULAR BIOLOGY (2013)

Review Biochemistry & Molecular Biology

AP2/ERF family transcription factors in plant abiotic stress responses

Junya Mizoi et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2012)

Article Evolutionary Biology

AP2/ERF Transcription Factor in Rice: Genome-Wide Canvas and Syntenic Relationships between Monocots and Eudicots

Muhammad Rashid et al.

EVOLUTIONARY BIOINFORMATICS (2012)

Article Biotechnology & Applied Microbiology

Gene ontology analysis for RNA-seq: accounting for selection bias

Matthew D. Young et al.

GENOME BIOLOGY (2010)

Article Multidisciplinary Sciences

JAZ repressor proteins are targets of the SCFCO11 complex during jasmonate signalling

Bryan Thines et al.

NATURE (2007)

Article Biochemistry & Molecular Biology

MYC2 differentially modulates diverse jasmonate-dependent functions in Arabidopsis

Bruno Dombrecht et al.

PLANT CELL (2007)

Article Plant Sciences

Genome-wide analysis of the ERF gene family in Arabidopsis and rice

T Nakano et al.

PLANT PHYSIOLOGY (2006)

Article Biochemistry & Molecular Biology

DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration- and cold-inducible gene expression

Y Sakuma et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2002)

Article Biochemistry & Molecular Biology

Identification and biochemical characterization of an Arabidopsis indole-3-acetic acid glucosyltransferase

RG Jackson et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2001)