Related references
Note: Only part of the references are listed.The landscape of immune dysregulation in Crohn?s disease revealed through single-cell transcriptomic profiling in the ileum and colon
Lingjia Kong et al.
IMMUNITY (2023)
The next-generation Open Targets Platform: reimagined, redesigned, rebuilt
David Ochoa et al.
NUCLEIC ACIDS RESEARCH (2023)
An integrated cell atlas of the lung in health and disease
Lisa Sikkema et al.
NATURE MEDICINE (2023)
GSEApy: a comprehensive package for performing gene set enrichment analysis in Python
Zhuoqing Fang et al.
BIOINFORMATICS (2023)
Local and systemic responses to SARS-CoV-2 infection in children and adults
Masahiro Yoshida et al.
NATURE (2022)
A Python library for probabilistic analysis of single-cell omics data
Adam Gayoso et al.
NATURE BIOTECHNOLOGY (2022)
Differential abundance testing on single-cell data using k-nearest neighbor graphs
Emma Dann et al.
NATURE BIOTECHNOLOGY (2022)
Co-varying neighborhood analysis identifies cell populations associated with phenotypes of interest from single-cell transcriptomics
Yakir A. Reshef et al.
NATURE BIOTECHNOLOGY (2022)
A blood atlas of COVID-19 defines hallmarks of disease severity and specificity
David J. Ahern et al.
CELL (2022)
Single-cell RNA sequencing identifies G-protein coupled receptor 87 as a basal cell marker expressed in distal honeycomb cysts in idiopathic pulmonary fibrosis
Katharina Heinzelmann et al.
EUROPEAN RESPIRATORY JOURNAL (2022)
Mapping single-cell data to reference atlases by transfer learning
Mohammad Lotfollahi et al.
NATURE BIOTECHNOLOGY (2022)
Mapping the developing human immune system across organs
Chenqu Suo et al.
SCIENCE (2022)
Single-cell eQTL mapping identifies cell type-specific genetic control of autoimmune disease
Seyhan Yazar et al.
SCIENCE (2022)
Single-cell RNA-seq reveals cell type-specific molecular and genetic associations to lupus
Richard K. Perez et al.
SCIENCE (2022)
Cross-tissue immune cell analysis reveals tissue-specific features in humans
C. Dominguez Conde et al.
SCIENCE (2022)
The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans
Robert C. Jones et al.
SCIENCE (2022)
Emerging Roles of Airway Epithelial Cells in Idiopathic Pulmonary Fibrosis
Ashesh Chakraborty et al.
CELLS (2022)
Pathogenic variants damage cell composition and single-cell transcription in cardiomyopathies
Daniel Reichart et al.
SCIENCE (2022)
Multifunctional Role of S100 Protein Family in the Immune System: An Update
Parul Singh et al.
CELLS (2022)
Machine learning powers biobank-driven drug discovery
Michael Eisenstein
NATURE BIOTECHNOLOGY (2022)
Airway basal cells show a dedifferentiated KRT17high Phenotype and promote fibrosis in idiopathic pulmonary fibrosis
Benedikt Jaeger et al.
NATURE COMMUNICATIONS (2022)
Cell type prioritization in single-cell data
Michael A. Skinnider et al.
NATURE BIOTECHNOLOGY (2021)
Adaptive immunity to SARS-CoV-2 and COVID-19
Alessandro Sette et al.
CELL (2021)
Probabilistic harmonization and annotation of single-cell transcriptomics data with deep generative models
Chenling Xu et al.
MOLECULAR SYSTEMS BIOLOGY (2021)
Molecular characterization of selectively vulnerable neurons in Alzheimer's disease
Kun Leng et al.
NATURE NEUROSCIENCE (2021)
COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas
Xianwen Ren et al.
CELL (2021)
Time-resolved systems immunology reveals a late juncture linked to fatal COVID-19
Can Liu et al.
CELL (2021)
Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19
Peter A. Szabo et al.
IMMUNITY (2021)
Blood and immune development in human fetal bone marrow and Down syndrome
Laura Jardine et al.
NATURE (2021)
An open approach to systematically prioritize causal variants and genes at all published human GWAS trait-associated loci
Edward Mountjoy et al.
NATURE GENETICS (2021)
Quantifying the effect of experimental perturbations at single-cell resolution
Daniel B. Burkhardt et al.
NATURE BIOTECHNOLOGY (2021)
Single-cell multi-omics analysis of the immune response in COVID-19
Emily Stephenson et al.
NATURE MEDICINE (2021)
Detection of differentially abundant cell subpopulations in scRNA-seq data
Jun Zhao et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)
Towards a Human Cell Atlas: Taking Notes from the Past
Rik G. H. Lindeboom et al.
TRENDS IN GENETICS (2021)
Disparate Interferon Signaling and Shared Aberrant Basaloid Cells in Single-Cell Profiling of Idiopathic Pulmonary Fibrosis and Systemic Sclerosis-Associated Interstitial Lung Disease
Eleanor Valenzi et al.
FRONTIERS IN IMMUNOLOGY (2021)
Cardiac cell type-specific gene regulatory programs and disease risk association
James D. Hocker et al.
SCIENCE ADVANCES (2021)
Integrated analysis of multimodal single-cell data
Yuhan Hao et al.
CELL (2021)
Platelets contribute to disease severity in COVID-19
Tessa J. Barrett et al.
JOURNAL OF THROMBOSIS AND HAEMOSTASIS (2021)
Cells of the human intestinal tract mapped across space and time
Rasa Elmentaite et al.
NATURE (2021)
Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses
Alison R. Barton et al.
NATURE GENETICS (2021)
SciPy 1.0: fundamental algorithms for scientific computing in Python
Pauli Virtanen et al.
NATURE METHODS (2020)
Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment
Jonas Schulte-Schrepping et al.
CELL (2020)
Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis
Taylor S. Adams et al.
SCIENCE ADVANCES (2020)
Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis
Arun C. Habermann et al.
SCIENCE ADVANCES (2020)
Immunophenotyping of COVID-19 and influenza highlights the role of type I interferons in development of severe COVID-19
Jeong Seok Lee et al.
SCIENCE IMMUNOLOGY (2020)
Mapping systemic lupus erythematosus heterogeneity at the single-cell level
Djamel Nehar-Belaid et al.
NATURE IMMUNOLOGY (2020)
Impaired type I interferon activity and inflammatory responses in severe COVID-19 patients
Jerome Hadjadj et al.
SCIENCE (2020)
Single-cell analysis of two severe COVID-19 patients reveals a monocyte-associated and tocilizumab-responding cytokine storm
Chuang Guo et al.
NATURE COMMUNICATIONS (2020)
Alveolar regeneration through a Krt8+transitional stem cell state that persists in human lung fibrosis
Maximilian Strunz et al.
NATURE COMMUNICATIONS (2020)
Cells of the adult human heart
Monika Litvinukova et al.
NATURE (2020)
Systems biological assessment of immunity to mild versus severe COVID-19 infection in humans
Prabhu S. Arunachalam et al.
SCIENCE (2020)
IL-32 induces epithelial-mesenchymal transition by triggering endoplasmic reticulum stress in A549 cells
Ling Gong et al.
BMC PULMONARY MEDICINE (2020)
glmGamPoi: fitting Gamma-Poisson generalized linear models on single cell count data
Constantin Ahlmann-Eltze et al.
BIOINFORMATICS (2020)
Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn's Disease
Rasa Elmentaite et al.
DEVELOPMENTAL CELL (2020)
A molecular cell atlas of the human lung from single-cell RNA sequencing
Kyle J. Travaglini et al.
NATURE (2020)
Single cell RNA sequencing of human microglia uncovers a subset associated with Alzheimer's disease
Marta Olah et al.
NATURE COMMUNICATIONS (2020)
T cell responses in patients with COVID-19
Zeyu Chen et al.
NATURE REVIEWS IMMUNOLOGY (2020)
BAL Cell Gene Expression Is Indicative of Outcome and Airway Basal Cell Involvement in Idiopathic Pulmonary Fibrosis
Antje Prasse et al.
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE (2019)
New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries (vol 51, pg 481, 2019)
Nick Shrine et al.
NATURE GENETICS (2019)
Single-cell genomics identifies cell type-specific molecular changes in autism
Dmitry Velmeshev et al.
SCIENCE (2019)
Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis
Christina Morse et al.
EUROPEAN RESPIRATORY JOURNAL (2019)
The therapy of idiopathic pulmonary fibrosis: what is next?
Vivien Somogyi et al.
EUROPEAN RESPIRATORY REVIEW (2019)
Leveraging Polygenic Functional Enrichment to Improve GWAS Power
Gleb Kichaev et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2019)
Single-Cell Transcriptomic Analysis of Human Lung Provides Insights into the Pathobiology of Pulmonary Fibrosis
Paul A. Reyfman et al.
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE (2019)
Aberrant epithelial differentiation by cigarette smoke dysregulates respiratory host defence
Gimano D. Amatngalim et al.
EUROPEAN RESPIRATORY JOURNAL (2018)
Deep generative modeling for single-cell transcriptomics
Romain Lopez et al.
NATURE METHODS (2018)
SCANPY: large-scale single-cell gene expression data analysis
F. Alexander Wolf et al.
GENOME BIOLOGY (2018)
Keratinization of Lung Squamous Cell Carcinoma Is Associated with Poor Clinical Outcome
Hye Jung Park et al.
TUBERCULOSIS AND RESPIRATORY DISEASES (2017)
Targeted Therapy for Idiopathic Pulmonary Fibrosis: Where To Now?
Sunad Rangarajan et al.
DRUGS (2016)
Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq
Itay Tirosh et al.
SCIENCE (2016)
Single-cell RNA sequencing identifies diverse roles of epithelial cells in idiopathic pulmonary fibrosis
Yan Xu et al.
JCI INSIGHT (2016)
Detection and quantification of epithelial progenitor cell populations in human healthy and IPF lungs
N. F. Smirnova et al.
RESPIRATORY RESEARCH (2016)
Basal cells of the human airways acquire mesenchymal traits in idiopathic pulmonary fibrosis and in culture
Hulda R. Jonsdottir et al.
LABORATORY INVESTIGATION (2015)
Bayesian probit regression model for the diagnosis of pulmonary fibrosis: proof-of-principle
Eric B. Meltzer et al.
BMC MEDICAL GENOMICS (2011)
A scaling normalization method for differential expression analysis of RNA-seq data
Mark D. Robinson et al.
GENOME BIOLOGY (2010)