4.7 Article

Molecular evidence for the adaptive evolution in euryhaline bivalves

Related references

Note: Only part of the references are listed.
Article Evolutionary Biology

Adaptive divergence and underlying mechanisms in response to salinity gradients between two Crassostrea oysters revealed by phenotypic and transcriptomic analyses

Ziyan Zhang et al.

Summary: Comparing the responses of closely related oyster species to different salinity conditions, this study revealed their evolutionary divergence in phenotypes and gene expression, and the contributions of species effect, environment effect, and their interaction to the adaptive divergence. Results showed that the two oyster species had different adaptability under high- and low-salinity conditions, and the transcriptional expression differences were primarily caused by the species effect. Furthermore, salinity-responsive pathways and solute carriers were found to play important roles in the adaptation of oysters.

EVOLUTIONARY APPLICATIONS (2023)

Article Fisheries

Examination of the regulation of energy metabolism, antioxidant response, and ammonia detoxification in hard clam, Mercenaria mercenaria, under hypersalinity stress

Cong Zhou et al.

Summary: With the increase in global warming, hypersalinity events are becoming more frequent. This study investigated the metabolic regulation in hard clams under hypersalinity stress and identified potential biomarkers, which can facilitate the assessment of the physiological status of hard clams in aquaculture.

AQUACULTURE (2023)

Article Biochemistry & Molecular Biology

Metabolomics and biochemical assays reveal the metabolic responses to hypo-salinity stress and osmoregulatory role of cAMP-PKA pathway in Mercenaria mercenaria

Cong Zhou et al.

Summary: This study investigated the metabolic responses to hypo-salinity stress and osmoregulation mechanisms in the hard clam Mercenaria mercenaria, a widely cultured euryhaline bivalve species in China. The study identified several changes in response to hypo-salinity stress, including increased vacuoles in gill filaments, up-regulation of Na+/K+-ATPase activity, and up-regulation of antioxidant metabolites. Potential biomarkers of hypo-salinity stress were also identified in the hard clams.

COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2022)

Review Biochemistry & Molecular Biology

SLC16 Family: From Atomic Structure to Human Disease

Patrick D. Bosshart et al.

Summary: The SLC16 family consists of diverse membrane proteins mediating the transport of monocarboxylates across biological membranes, playing roles in nutrient transport, intracellular pH regulation, and thyroid hormone homeostasis. Alterations in expression levels and transport function of specific SLC16 transporters are associated with severe health disorders, while members transporting L-lactate play crucial roles in tumor metabolism. Structural information from a SLC16 homolog sheds new light on the family, discussing their role in cancer metabolism and potential for anticancer therapy through their inhibition.

TRENDS IN BIOCHEMICAL SCIENCES (2021)

Article Biology

The hard clam genome reveals massive expansion and diversification of inhibitors of apoptosis in Bivalvia

Hao Song et al.

Summary: The study reveals a significant expansion and diversification of the IAP gene family in hard clams, indicating its crucial role in evolutionary success in coping with environmental stresses.

BMC BIOLOGY (2021)

Article Environmental Sciences

Modelling copper toxicokinetics in the zebra mussel, Dreissena polymorpha, under chronic exposures at various pH and sodium concentrations

T. T. Yen Le et al.

Summary: The stenohaline zebra mussel, Dreissena polymorpha, is highly sensitive to the ionic composition of its aquatic environment. Research on waterborne copper uptake and accumulation in zebra mussels has shown significant variations under different environmental conditions. The study also revealed the impact of pH and sodium concentration on copper uptake, with kinetic modeling predicting accumulation based on these factors.

CHEMOSPHERE (2021)

Article Biochemistry & Molecular Biology

Integrated analysis of transcriptomic and metabolomic data to evaluate responses to hypersalinity stress in the gill of the razor clam (Sinonovacula constricta)

Yan Li et al.

Summary: The study revealed that marine mollusks are able to maintain their physiological functions in response to high salinity stress by regulating gene expression and metabolite levels. High salinity stress affects amino acid and carbohydrate metabolism, leading to upregulation of genes related to the immune system, cytoskeleton remodeling, and signal transduction pathways, in order to cope with the impact of high salinity stress.

COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS (2021)

Article Biotechnology & Applied Microbiology

RNA-Seq analysis and WGCNA reveal dynamic molecular responses to air exposure in the hard clam Mercenaria mercenaria

Cong Zhou et al.

Summary: The study conducted RNA sequencing on the hemocytes of hard clams exposed to air for varying durations, revealing the overall and dynamic molecular responses of hard clams to air exposure. The up-regulation of cytochrome P450 1A and 3A, and monocarboxylate transporter family members during air exposure, as well as different dominant molecular processes in response to different durations of air exposure were observed.

GENOMICS (2021)

Review Fisheries

The role of salinity in physiological responses of bivalves

Sajjad Pourmozaffar et al.

REVIEWS IN AQUACULTURE (2020)

Review Physiology

The Role of Peptide Hormones in Insect Lipid Metabolism

Umut Toprak

FRONTIERS IN PHYSIOLOGY (2020)

Review Neurosciences

The Role of the SLC Transporters Protein in the Neurodegenerative Disorders

Asli Aykac et al.

CLINICAL PSYCHOPHARMACOLOGY AND NEUROSCIENCE (2020)

Article Biochemistry & Molecular Biology

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

Chengjie Chen et al.

MOLECULAR PLANT (2020)

Article Zoology

Physiological and biochemical responses of Dosinia corrugata to different thermal and salinity stressors

Hongtao Nie et al.

JOURNAL OF EXPERIMENTAL ZOOLOGY PART A-ECOLOGICAL AND INTEGRATIVE PHYSIOLOGY (2018)

Article Biophysics

iMusta4SLC: Database for the structural property and variations of solute carrier transporters

Akiko Higuchi et al.

BIOPHYSICS AND PHYSICOBIOLOGY (2018)

Review Fisheries

A comparative and evolutionary approach to oxidative stress in fish: A review

Kim Birnie-Gauvin et al.

FISH AND FISHERIES (2017)

Article Environmental Sciences

Physiological and cellular responses of oysters (Crassostrea hongkongensis) in a multimetal-contaminated estuary

Xuan Liu et al.

ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY (2016)

Review Biochemistry & Molecular Biology

Stress defense mechanisms of NADPH-dependent thioredoxin reductases (NTRs) in plants

Joon-Yung Cha et al.

PLANT SIGNALING & BEHAVIOR (2015)

Article Biotechnology & Applied Microbiology

Transcriptomic analysis of candidate osmoregulatory genes in the eastern oyster Crassostrea virginica

Laura E. Eierman et al.

BMC GENOMICS (2014)

Article Biochemistry & Molecular Biology

Tolerance of Venerupis philippinarum to salinity: Osmotic and metabolic aspects

Vanessa Carregosa et al.

COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY (2014)

Article Multidisciplinary Sciences

Adaptive evolution of the circadian gene timeout in insects

Hai-Feng Gu et al.

SCIENTIFIC REPORTS (2014)

Article Oceanography

Effects of Salinity on Embryonic Development, Survival, and Growth of Crassostrea hongkongensis

Huo Zhongming et al.

JOURNAL OF OCEAN UNIVERSITY OF CHINA (2014)

Article Physiology

Osmoregulation and Excretion

Erik Hviid Larsen et al.

COMPREHENSIVE PHYSIOLOGY (2014)

Article Multidisciplinary Sciences

Genomic mutation rates that neutralize adaptive evolution and natural selection

Philip J. Gerrish et al.

JOURNAL OF THE ROYAL SOCIETY INTERFACE (2013)

Article Biochemistry & Molecular Biology

Effects of salinity on O2 consumption, ROS generation and oxidative stress status of gill mitochondria of the mud crab Scylla serrata

Biswaranjan Paital et al.

COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY (2012)

Article Multidisciplinary Sciences

The oyster genome reveals stress adaptation and complexity of shell formation

Guofan Zhang et al.

NATURE (2012)

Review Biochemistry & Molecular Biology

Secreted phospholipase A2 revisited

Makoto Murakami et al.

JOURNAL OF BIOCHEMISTRY (2011)

Article Physiology

Intra- and extracellular osmotic regulation in the hololimnetic Caridea and Anomura: a phylogenetic perspective on the conquest of fresh water by the decapod Crustacea

Samuel Coelho de Faria et al.

JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMIC AND ENVIRONMENTAL PHYSIOLOGY (2011)

Review Biochemistry & Molecular Biology

Membranes in Balance: Mechanisms of Sphingolipid Homeostasis

David K. Breslow et al.

MOLECULAR CELL (2010)

Article Biochemistry & Molecular Biology

A trifunctional enzyme with glutathione S-transferase, glutathione peroxidase and superoxide dismutase activity

Fei Yan et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS (2008)

Article Biotechnology & Applied Microbiology

Identification of six putative human transporters with structural similarity to the drug transporter SLC22 family

Josefin A. Jacobsson et al.

GENOMICS (2007)

Article Biochemistry & Molecular Biology

PAML 4: Phylogenetic analysis by maximum likelihood

Ziheng Yang

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Article Biochemistry & Molecular Biology

Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

JZ Zhang et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Article Physiology

Sodium-dependent ascorbic acid transporter family SLC23

H Takanaga et al.

PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY (2004)

Review Plant Sciences

Community assembly, niche conservatism, and adaptive evolution in changing environments

DD Ackerly

INTERNATIONAL JOURNAL OF PLANT SCIENCES (2003)

Article Biochemistry & Molecular Biology

Free amino acids in the clam Macoma balthica L. (Bivalvia, Mollusca) from brackish waters of the southern Baltic Sea

A Sokolowski et al.

COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY (2003)

Review Biochemistry & Molecular Biology

The thioredoxin system of Plasmodium falciparum and other parasites

S Rahlfs et al.

CELLULAR AND MOLECULAR LIFE SCIENCES (2002)

Article Endocrinology & Metabolism

Stress-induced catecholamine changes in the hemolymph of the oyster Crassostrea gigas

A Lacoste et al.

GENERAL AND COMPARATIVE ENDOCRINOLOGY (2001)