4.7 Article

Genomics of speciation and introgression in Princess cichlid fishes from Lake Tanganyika

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Powerful methods for detecting introgressed regions from population genomic data

Benjamin K. Rosenzweig et al.

MOLECULAR ECOLOGY (2016)

Review Biochemistry & Molecular Biology

Genomics of local adaptation with gene flow

Anna Tigano et al.

MOLECULAR ECOLOGY (2016)

Article Evolutionary Biology

Adaptation to Low Salinity Promotes Genomic Divergence in Atlantic Cod (Gadus morhua L.)

Paul R. Berg et al.

GENOME BIOLOGY AND EVOLUTION (2015)

Article Biochemistry & Molecular Biology

Biased introgression of mitochondrial and nuclear genes: a comparison of diploid and haplodiploid systems

Manus M. Patten et al.

MOLECULAR ECOLOGY (2015)

Article Biochemistry & Molecular Biology

High levels of interspecific gene flow in an endemic cichlid fish adaptive radiation from an extreme lake environment

Antonia G. P. Ford et al.

MOLECULAR ECOLOGY (2015)

Article Biochemistry & Molecular Biology

A tribal level phylogeny of Lake Tanganyika cichlid fishes based on a genomic multi-marker approach

Britta S. Meyer et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2015)

Article Multidisciplinary Sciences

Evolution of Darwin's finches and their beaks revealed by genome sequencing

Sangeet Lamichhaney et al.

NATURE (2015)

Article Plant Sciences

The effect of temperature on the male and female recombination landscape of barley

Dylan Phillips et al.

NEW PHYTOLOGIST (2015)

Article Multidisciplinary Sciences

Adaptive introgression in an African malaria mosquito coincident with the increased usage of insecticide-treated bed nets

Laura C. Norris et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Multidisciplinary Sciences

Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake

Milan Malinsky et al.

SCIENCE (2015)

Review Genetics & Heredity

The genomics of organismal diversification illuminated by adaptive radiations

Daniel Berner et al.

TRENDS IN GENETICS (2015)

Article Multidisciplinary Sciences

The genomics of ecological vicariance in threespine stickleback fish

Marius Roesti et al.

NATURE COMMUNICATIONS (2015)

Article Biochemistry & Molecular Biology

Evaluating the Use of ABBA-BABA Statistics to Locate Introgressed Loci

Simon H. Martin et al.

MOLECULAR BIOLOGY AND EVOLUTION (2015)

Article Multidisciplinary Sciences

Interspecific introgressive origin of genomic diversity in the house mouse

Kevin J. Liu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Multidisciplinary Sciences

Extensive introgression in a malaria vector species complex revealed by phylogenomics

Michael C. Fontaine et al.

SCIENCE (2015)

Review Ecology

Ecology and Evolution of the African Great Lakes and Their Faunas

Walter Salzburger et al.

ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 45 (2014)

Article Biochemical Research Methods

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis

BIOINFORMATICS (2014)

Article Biochemistry & Molecular Biology

The Relation between Recombination Rate and Patterns of Molecular Evolution and Variation in Drosophila melanogaster

Jose L. Campos et al.

MOLECULAR BIOLOGY AND EVOLUTION (2014)

Article Biochemistry & Molecular Biology

The genomic signature of parallel adaptation from shared genetic variation

Marius Roesti et al.

MOLECULAR ECOLOGY (2014)

Article Biochemistry & Molecular Biology

Theoretical models of the influence of genomic architecture on the dynamics of speciation

Samuel M. Flaxman et al.

MOLECULAR ECOLOGY (2014)

Article Biochemistry & Molecular Biology

Hybrid speciation through sorting of parental incompatibilities in Italian sparrows

Jo S. Hermansen et al.

MOLECULAR ECOLOGY (2014)

Review Biochemistry & Molecular Biology

Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

Tami E. Cruickshank et al.

MOLECULAR ECOLOGY (2014)

Article Multidisciplinary Sciences

Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA

Emilia Huerta-Sanchez et al.

NATURE (2014)

Editorial Material Multidisciplinary Sciences

EVOLUTIONARY BIOLOGY Radiating genomes

Chris D. Jiggins

NATURE (2014)

Article Multidisciplinary Sciences

The genomic substrate for adaptive radiation in African cichlid fish

David Brawand et al.

NATURE (2014)

Article Multidisciplinary Sciences

Maximum likelihood inference of reticulate evolutionary histories

Yun Yu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Multidisciplinary Sciences

The genomic landscape underlying phenotypic integrity in the face of gene flow in crows

J. W. Poelstra et al.

SCIENCE (2014)

Article Biochemical Research Methods

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

Remco Bouckaert et al.

PLOS COMPUTATIONAL BIOLOGY (2014)

Article Genetics & Heredity

Genome Sequencing Highlights the Dynamic Early History of Dogs

Adam H. Freedman et al.

PLOS GENETICS (2014)

Article Genetics & Heredity

Genetic Diversity in the Interference Selection Limit

Benjamin H. Good et al.

PLOS GENETICS (2014)

Article Biotechnology & Applied Microbiology

Unsupervised genome-wide recognition of local relationship patterns

Neda Zamani et al.

BMC GENOMICS (2013)

Article Biochemistry & Molecular Biology

Genome-wide evidence for speciation with gene flow in Heliconius butterflies

Simon H. Martin et al.

GENOME RESEARCH (2013)

Article Ecology

Hybridization is important in evolution, but is speciation?

G. -P. Saetre

JOURNAL OF EVOLUTIONARY BIOLOGY (2013)

Review Ecology

Hybridization and speciation

R. Abbott et al.

JOURNAL OF EVOLUTIONARY BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Genome-wide patterns of divergence and gene flow across a butterfly radiation

Nicola J. Nadeau et al.

MOLECULAR ECOLOGY (2013)

Review Biochemistry & Molecular Biology

Recombination in the threespine stickleback genomepatterns and consequences

Marius Roesti et al.

MOLECULAR ECOLOGY (2013)

Review Genetics & Heredity

Genomic signatures of selection at linked sites: unifying the disparity among species

Asher D. Cutter et al.

NATURE REVIEWS GENETICS (2013)

Article Biology

Molecular and fossil evidence place the origin of cichlid fishes long after Gondwanan rifting

Matt Friedman et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2013)

Article Biotechnology & Applied Microbiology

A high density recombination map of the pig reveals a correlation between sex-specific recombination and GC content

Flavie Tortereau et al.

BMC GENOMICS (2012)

Article Biotechnology & Applied Microbiology

Integrating cytogenetics and genomics in comparative evolutionary studies of cichlid fish

Juliana Mazzuchelli et al.

BMC GENOMICS (2012)

Editorial Material Biochemistry & Molecular Biology

Evolution: Cichlid Models on the Runaway to Speciation

Hugo F. Gante et al.

CURRENT BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Convergent Evolution within an Adaptive Radiation of Cichlid Fishes

Moritz Muschick et al.

CURRENT BIOLOGY (2012)

Article Genetics & Heredity

Fine-Scale Maps of Recombination Rates and Hotspots in the Mouse Genome

Hadassa Brunschwig et al.

GENETICS (2012)

Article Ecology

Spatially explicit models of divergence and genome hitchhiking

S. M. Flaxman et al.

JOURNAL OF EVOLUTIONARY BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Ancient Hybridization and Phenotypic Novelty within Lake Malawi's Cichlid Fish Radiation

Martin J. Genner et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Article Biochemistry & Molecular Biology

Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty

Guy Baele et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Article Multidisciplinary Sciences

Ecological opportunity and sexual selection together predict adaptive radiation

Catherine E. Wagner et al.

NATURE (2012)

Review Biology

Recombination rate variation and speciation: theoretical predictions and empirical results from rabbits and mice

Michael W. Nachman et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)

Article Biology

Repeated trans-watershed hybridization among haplochromine cichlids (Cichlidae) was triggered by Neogene landscape evolution

Julia Schwarzer et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)

Editorial Material Multidisciplinary Sciences

How Cichlids Diversify

M. Emilia Santos et al.

SCIENCE (2012)

Review Genetics & Heredity

Direct and indirect consequences of meiotic recombination: implications for genome evolution

Matthew T. Webster et al.

TRENDS IN GENETICS (2012)

Review Genetics & Heredity

The genomics of speciation-with-gene-flow

Jeffrey L. Feder et al.

TRENDS IN GENETICS (2012)

Article Biochemistry & Molecular Biology

Recombination Modulates How Selection Affects Linked Sites in Drosophila

Suzanne E. McGaugh et al.

PLOS BIOLOGY (2012)

Article Genetics & Heredity

Adaptive Introgression across Species Boundaries in Heliconius Butterflies

Carolina Pardo-Diaz et al.

PLOS GENETICS (2012)

Article Biochemical Research Methods

The variant call format and VCFtools

Petr Danecek et al.

BIOINFORMATICS (2011)

Letter Biochemistry & Molecular Biology

Repeated colonization and hybridization in Lake Malawi cichlids

Domino A. Joyce et al.

CURRENT BIOLOGY (2011)

Article Biochemistry & Molecular Biology

Testing for Ancient Admixture between Closely Related Populations

Eric Y. Durand et al.

MOLECULAR BIOLOGY AND EVOLUTION (2011)

Review Biochemistry & Molecular Biology

A framework for comparing processes of speciation in the presence of gene flow

Carole M. Smadja et al.

MOLECULAR ECOLOGY (2011)

Review Biochemistry & Molecular Biology

The coupling hypothesis: why genome scans may fail to map local adaptation genes

Nicolas Bierne et al.

MOLECULAR ECOLOGY (2011)

Article Genetics & Heredity

An SNP-Based Linkage Map for Zebrafish Reveals Sex Determination Loci

Kevin M. Bradley et al.

G3-GENES GENOMES GENETICS (2011)

Article Biochemistry & Molecular Biology

The recombination landscape of the zebra finch Taeniopygia guttata genome

Niclas Backstrom et al.

GENOME RESEARCH (2010)

Article Biochemistry & Molecular Biology

Evolutionary history of the Lake Tanganyika cichlid tribe Lamprologini (Teleostei: Perciformes) derived from mitochondrial and nuclear DNA data

Christian Sturmbauer et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2010)

Article Biochemistry & Molecular Biology

Rapid radiation, ancient incomplete lineage sorting and ancient hybridization in the endemic Lake Tanganyika cichlid tribe Tropheini

Stephan Koblmueller et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2010)

Article Multidisciplinary Sciences

Recombination and Its Impact on the Genome of the Haplodiploid Parasitoid Wasp Nasonia

Oliver Niehuis et al.

PLOS ONE (2010)

Article Multidisciplinary Sciences

A Draft Sequence of the Neandertal Genome

Richard E. Green et al.

SCIENCE (2010)

Review Genetics & Heredity

Understanding the onset of hybrid speciation

Arne W. Nolte et al.

TRENDS IN GENETICS (2010)

Article Genetics & Heredity

Genetic Evidence for Hybrid Trait Speciation in Heliconius Butterflies

Camilo Salazar et al.

PLOS GENETICS (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

Fast and accurate short read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2009)

Review Biochemistry & Molecular Biology

The interaction of sexually and naturally selected traits in the adaptive radiations of cichlid fishes

Walter Salzburger

MOLECULAR ECOLOGY (2009)

Article Biochemistry & Molecular Biology

Complete mitochondrial DNA replacement in a Lake Tanganyika cichlid fish

B. Nevado et al.

MOLECULAR ECOLOGY (2009)

Review Genetics & Heredity

Effective population size and patterns of molecular evolution and variation

Brian Charlesworth

NATURE REVIEWS GENETICS (2009)

Review Plant Sciences

Hybrid speciation in angiosperms: parental divergence drives ploidy

Ovidiu Paun et al.

NEW PHYTOLOGIST (2009)

Article Biochemistry & Molecular Biology

Assessing the gene space in draft genomes

Genis Parra et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Genetics & Heredity

Recombinational Landscape and Population Genomics of Caenorhabditis elegans

Matthew V. Rockman et al.

PLOS GENETICS (2009)

Review Genetics & Heredity

Pervasive Natural Selection in the Drosophila Genome?

Guy Sella et al.

PLOS GENETICS (2009)

Article Genetics & Heredity

Genetic Analysis of Variation in Human Meiotic Recombination

Reshmi Chowdhury et al.

PLOS GENETICS (2009)

Article Biochemical Research Methods

Aggressive assembly of pyrosequencing reads with mates

Jason R. Miller et al.

BIOINFORMATICS (2008)

Article Biochemical Research Methods

PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships

Cuong Than et al.

BMC BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

Homoploid hybrid speciation in animals

Jesus Mavarez et al.

MOLECULAR ECOLOGY (2008)

Review Biology

Hybrid trait speciation and Heliconius butterflies

Chris D. Jiggins et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2008)

Article Multidisciplinary Sciences

Fine-scale mapping of recombination rate in Drosophila refines its correlation to diversity and divergence

Rob J. Kulathinal et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Cell Biology

A genomic view of introgression and hybrid speciation

Eric J. Baack et al.

CURRENT OPINION IN GENETICS & DEVELOPMENT (2007)

Review Biochemistry & Molecular Biology

Population genomics:: Whole-genome analysis of polymorphism and divergence in Drosophila simulans

David J. Begun et al.

PLOS BIOLOGY (2007)

Article Biochemistry & Molecular Biology

Parallel evolution of facial stripe patterns in the Neolamprologus brichardilpulcher species complex endemic to Lake Tanganyika

Nina Duftner et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2007)

Article Biochemistry & Molecular Biology

Phylogenetic relationships of the lake Tanganyika cichlid tribe lamprologini: The story from mitochondrial DNA

Julia J. Day et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2007)

Article Multidisciplinary Sciences

East African megadroughts between 135 and 75 thousand years ago and bearing on early-modern human origins

Christopher A. Scholz et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biology

No genomic mosaicism in a putative hybrid butterfly species

Marcus R. Kronforst et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2007)

Article Biochemical Research Methods

CEGMA: a pipeline to accurately annotate core genes in eukaryotic genornes

Genis Parra et al.

BIOINFORMATICS (2007)

Review Multidisciplinary Sciences

Hybrid speciation

James Mallet

NATURE (2007)

Review Biology

African cichlid fish: a model system in adaptive radiation research

Ole Seehausen

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2006)

Article Ecology

Cooperative breeding in the lake tanganyika cichlid Julidochromis ornatus

Dik Heg et al.

ENVIRONMENTAL BIOLOGY OF FISHES (2006)

Article Multidisciplinary Sciences

Speciation by hybridization in Heliconius butterflies

Jesus Mavarez et al.

NATURE (2006)

Review Genetics & Heredity

Chromosome inversions, local adaptation and speciation

Mark Kirkpatrick et al.

GENETICS (2006)

Article Biochemistry & Molecular Biology

Hybrid origin of a swordtail species (Teleostei: Xiphophorus clemenciae) driven by sexual selection

A Meyer et al.

MOLECULAR ECOLOGY (2006)

Article Biochemistry & Molecular Biology

Genomic islands of speciation in Anopheles gambiae

TL Turner et al.

PLOS BIOLOGY (2005)

Review Biochemistry & Molecular Biology

Recombination and speciation

RK Butlin

MOLECULAR ECOLOGY (2005)

Review Ecology

Hybridization and adaptive radiation

O Seehausen

TRENDS IN ECOLOGY & EVOLUTION (2004)

Review Genetics & Heredity

Adaptive evolution and explosive speciation: The cichlid fish model

TD Kocher

NATURE REVIEWS GENETICS (2004)

Article Biochemistry & Molecular Biology

Comparative recombination rates in the rat, mouse, and human genomes

MI Jensen-Seaman et al.

GENOME RESEARCH (2004)

Article Biology

Predation risk is an ecological constraint for helper dispersal in a cooperatively breeding cichlid

D Heg et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2004)

Article Multidisciplinary Sciences

Major ecological transitions in wild sunflowers facilitated by hybridization

LH Rieseberg et al.

SCIENCE (2003)

Article Genetics & Heredity

A neutral explanation for the correlation of diversity with recombination rates in humans

I Hellmann et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2003)

Article Biochemistry & Molecular Biology

Speciation via introgressive hybridization in East African cichlids?

W Salzburger et al.

MOLECULAR ECOLOGY (2002)

Article Biochemistry & Molecular Biology

How many species of cichlid fishes are there in African lakes?

GF Turner et al.

MOLECULAR ECOLOGY (2001)

Review Ecology

The genic view of the process of speciation

CI Wu

JOURNAL OF EVOLUTIONARY BIOLOGY (2001)

Article Behavioral Sciences

Correlates of group size in a cooperatively breeding cichlid fish (Neolamprologus pulcher)

S Balshine et al.

BEHAVIORAL ECOLOGY AND SOCIOBIOLOGY (2001)

Article Biochemistry & Molecular Biology

Lake level fluctuations synchronize genetic divergences of cichlid fishes in African lakes

C Sturmbauer et al.

MOLECULAR BIOLOGY AND EVOLUTION (2001)