4.5 Article

Protein biomarkers for root length and root dry mass on chromosomes 4A and 7A in wheat

Related references

Note: Only part of the references are listed.
Article Plant Sciences

Proteomic analysis of near-isogenic lines reveals key biomarkers on wheat chromosome 4B conferring drought tolerance

Sina Nouraei et al.

Summary: Drought is a significant challenge for wheat production and this study investigated the mechanism behind drought tolerance in wheat using proteomic analysis. The study identified 41 differentially expressed proteins related to drought tolerance and revealed important pathways involved in drought tolerance, such as transcription, translation, protein export, photosynthesis, and carbohydrate metabolism. Several candidate proteins responsible for drought tolerance were suggested, including 30S ribosomal protein S15, SRP54 domain-containing protein, auxin-repressed protein, serine hydroxymethyltransferase, and an uncharacterized protein.

PLANT GENOME (2023)

Article Biochemical Research Methods

The wheat secreted root proteome: Implications for phosphorus mobilisation and biotic interactions

Christiana Staudinger et al.

Summary: Root-secreted acid phosphatases and organic anions are believed to be major factors in plant phosphorus (P) mobilization under P limiting conditions. However, other mechanisms also play a role, especially in species with fine roots. This study characterized the proteins in wheat root tip mucilage, soluble root secretions, and root tip proteomes. The results showed that proteins in the mucilage have the potential to modify the plant's immediate environment. Wheat acid phosphatases appear to have a minor role in P mobilization beyond the root surface.

JOURNAL OF PROTEOMICS (2022)

Article Genetics & Heredity

Identification of Phosphorus Stress Related Proteins in the Seedlings of Dongxiang Wild Rice (Oryza Rufipogon Griff.) Using Label-Free Quantitative Proteomic Analysis

Qianwen Deng et al.

Summary: By using a proteomic approach and joint analysis with transcriptome data, potential unique low phosphorus response genes in Dongxiang wild rice (DXWR) were identified. This study provides insights into the regulation mechanism and cloning of low phosphorus tolerance genes in wild rice.

GENES (2022)

Article Biotechnology & Applied Microbiology

Label-free quantitative proteomics of maize roots from different root zones provides insight into proteins associated with enhance water uptake

Junqiao Song et al.

Summary: In this study, the protein profiles of different zones of maize roots were analyzed to investigate the mechanisms of enhanced water uptake. The middle root zone showed the highest water uptake and had different protein abundance patterns compared to other zones. The findings provide insights into the processes involved in root water uptake in maize.

BMC GENOMICS (2022)

Article Biochemical Research Methods

Distinct salinity-induced changes in wheat metabolic machinery in different root tissue types

Bhagya M. Dissanayake et al.

Summary: This study reveals significant differences in proteomic responses to salinity between wheat root tips and mature roots. The impaired protein synthesis and energy production in root tips under salt stress are correlated with decreased root growth and respiratory rate. Understanding the proteomic changes in wheat root responses to salinity is important for improving salt tolerance in wheat.

JOURNAL OF PROTEOMICS (2022)

Article Biotechnology & Applied Microbiology

Riboflavin integrates cellular energetics and cell cycle to regulate maize seed development

Qiuzhen Tian et al.

Summary: In this research, a novel maize mutant o18 was identified, which exhibited impaired endosperm filling and embryo development. The loss of function of enzyme ZmRIBA1 in o18 disrupted cellular energy metabolism and cell cycle progression. Unexpectedly, the up-regulation of cell cycle genes in o18 correlated with the increase of H3K4me3 levels, suggesting a possible epigenetic backup mechanism. Riboflavin was found to play a crucial role in coordinating cellular energy and cell cycle during maize endosperm development.

PLANT BIOTECHNOLOGY JOURNAL (2022)

Article Plant Sciences

Transcriptome Analyses of Near Isogenic Lines Reveal Putative Drought Tolerance Controlling Genes in Wheat

Sina Nouraei et al.

Summary: This study analyzed gene expression profiling in wheat to investigate the genetic control of drought tolerance. The researchers identified candidate genes and genetic markers associated with the qDSI.4B.1 locus, which can be used in breeding programs for drought tolerance. The study also revealed the biological processes involved in the response to drought stress.

FRONTIERS IN PLANT SCIENCE (2022)

Review Biochemistry & Molecular Biology

Wheat Proteomics for Abiotic Stress Tolerance and Root System Architecture: Current Status and Future Prospects

Tanushree Halder et al.

Summary: Wheat is a crucial crop for global food security, but its production is hindered by climate change and abiotic stresses. Improving root system architecture traits can enhance yields in both normal and stressed environments. Proteomic studies have identified key proteins involved in abiotic stress responses and root system architecture, but more research is needed for harnessing proteomics to improve wheat's root system traits.

PROTEOMES (2022)

Article Soil Science

Root and shoot growth of spring wheat (Triticum aestivum L.) are differently affected by increasing subsoil biopore density when grown under different subsoil moisture

Mirjam Koch et al.

Summary: The study demonstrated that high biopore abundancies have the potential to improve both belowground and aboveground biomass, with dry conditions leading to improved root exploration and hydration, and moist conditions resulting in enhanced plant growth and nutrient uptake. The availability of subsoil water and the influence of earthworms on soil nutrients play crucial roles in these processes.

BIOLOGY AND FERTILITY OF SOILS (2021)

Article Plant Sciences

Physiological and Proteomic Signatures Reveal Mechanisms of Superior Drought Resilience in Pearl Millet Compared to Wheat

Arindam Ghatak et al.

Summary: Pearl millet and wheat are important cereal crops, with pearl millet showing superior resilience to drought stress. Physiological and proteomics studies revealed a stay-green phenotype in pearl millet and differential senescence signatures in wheat, highlighting the different responses to drought stress between the two crops.

FRONTIERS IN PLANT SCIENCE (2021)

Article Multidisciplinary Sciences

Exogenous salicylic acid-induced drought stress tolerance in wheat (Triticum aestivum L.) grown under hydroponic culture

Ali Ahmad et al.

Summary: Salicylic acid application can alleviate drought stress on wheat, leading to improved plant physiological characteristics and productivity. Wheat plants treated with SA under no drought conditions showed significantly increased fresh and dry weights, along with enhanced physiological traits. Conversely, drought-sensitive wheat varieties exhibited adverse effects on plant weight and growth under mild drought stress without SA application.

PLOS ONE (2021)

Article Plant Sciences

Characterization of 150 Wheat Cultivars by LC-MS-Based Label-Free Quantitative Proteomics Unravels Possibilities to Design Wheat Better for Baking Quality and Human Health

Muhammad Afzal et al.

Summary: The study analyzed the expression of 756 proteins across 150 wheat cultivars using proteomics and found that environmental conditions have a significant impact on protein expression. Wheat cultivars varied greatly in their protein profiles, with 114 proteins being crucial for bread quality and human health.

PLANTS-BASEL (2021)

Article Biochemistry & Molecular Biology

Identification of Candidate Genes for Root Traits Using Genotype-Phenotype Association Analysis of Near-Isogenic Lines in Hexaploid Wheat (Triticum aestivum L.)

Tanushree Halder et al.

Summary: This study phenotyped root traits in wheat using 10 pairs of near-isogenic lines targeting four genomic regions (GRs) and identified 15 putative candidate genes associated with different root traits. Among the candidate genes, UDP-glycosyltransferase (UGT)-encoding genes and leucine-rich repeat receptor-like protein kinase (LRR-RLK)-encoding gene showed important functions for root trait control in other crops. Further confirmation and validation of these candidate genes are needed for marker-assisted wheat breeding.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2021)

Article Multidisciplinary Sciences

Proteome and transcriptome analyses of wheat near isogenic lines identifies key proteins and genes of wheat bread quality

Liangjie Lv et al.

Summary: Regulation of wheat protein quality involves multiple metabolic pathways, with key enriched pathways including alanine, aspartate, and glutamate metabolism. Differentially expressed proteins or genes in amino acid synthesis pathways impact wheat quality, and ribosomes and the ER may play key roles in regulating glutenin synthesis. Real-time quantitative PCR analysis validated some differentially expressed proteins, confirming the transcriptome and proteomic results.

SCIENTIFIC REPORTS (2021)

Review Biochemistry & Molecular Biology

SRPassing Co-translational Targeting: The Role of the Signal Recognition Particle in Protein Targeting and mRNA Protection

Morgana K. Kellogg et al.

Summary: Signal recognition particle (SRP) is an RNA and protein complex found across all domains of life, with varying compositions and functions in different organisms. Its main function involves targeting proteins to the endoplasmic reticulum and protecting the mRNA of secretory proteins from degradation.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2021)

Review Biochemistry & Molecular Biology

Plant proteomic research for improvement of food crops under stresses: a review

Ghazala Mustafa et al.

Summary: Technological advancements in traditional plant breeding methods have led to changes in crop improvement approaches, with proteomic studies playing a crucial role in exploring the relationship between plant growth and adaptation to different environmental conditions.

MOLECULAR OMICS (2021)

Article Plant Sciences

Phenotypic variability in bread wheat root systems at the early vegetative stage

Chen Yinglong et al.

BMC PLANT BIOLOGY (2020)

Article Multidisciplinary Sciences

A universal method for high-quality RNA extraction from plant tissues rich in starch, proteins and fiber

Amaranatha R. Vennapusa et al.

SCIENTIFIC REPORTS (2020)

Article Plant Sciences

A proteomic analysis of grain yield-related traits in wheat

Sintayehu D. Daba et al.

AOB PLANTS (2020)

Review Biochemistry & Molecular Biology

A Critical Review of Bottom-Up Proteomics: The Good, the Bad, and the Future of This Field

Emmalyn J. Dupree et al.

PROTEOMES (2020)

Review Biotechnology & Applied Microbiology

Breeding crops to feed 10 billion

Lee T. Hickey et al.

NATURE BIOTECHNOLOGY (2019)

Article Multidisciplinary Sciences

Evaluation of the effects of humic acids on maize root architecture by label-free proteomics analysis

Rosane Oliveira Nunes et al.

SCIENTIFIC REPORTS (2019)

Article Biochemistry & Molecular Biology

OsASN1 Plays a Critical Role in Asparagine-Dependent Rice Development

Le Luo et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)

Article Biochemical Research Methods

Proteomics in commercial crops: An overview

Boon Chin Tan et al.

JOURNAL OF PROTEOMICS (2017)

Article Biochemical Research Methods

iTRAQ-based quantitative proteomic analysis of wheat roots in response to salt stress

Qiyan Jiang et al.

PROTEOMICS (2017)

Review Plant Sciences

Accelerated Generation of Selfed Pure Line Plants for Gene Identification and Crop Breeding

Guijun Yan et al.

FRONTIERS IN PLANT SCIENCE (2017)

Article Food Science & Technology

Food safety: Structure and expression of the asparagine synthetase gene family of wheat

Runhong Gao et al.

JOURNAL OF CEREAL SCIENCE (2016)

Article Multidisciplinary Sciences

Relationship between differentially expressed mRNA and mRNA-protein correlations in a xenograft model system

Antonis Koussounadis et al.

SCIENTIFIC REPORTS (2015)

Article Biochemistry & Molecular Biology

Comparison of label-free and label-based strategies for proteome analysis of hepatoma cell lines

Dominik A. Megger et al.

BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2014)

Article Genetics & Heredity

Mapping QTL for the traits associated with heat tolerance in wheat (Triticum aestivum L.)

Shyamal Krishna Talukder et al.

BMC GENETICS (2014)

Article Biochemical Research Methods

Analysis of Differential Expression Patterns of mRNA and Protein During Cold-acclimation and De-acclimation in Arabidopsis

Kentaro Nakaminami et al.

MOLECULAR & CELLULAR PROTEOMICS (2014)

Article Biochemical Research Methods

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

Juergen Cox et al.

MOLECULAR & CELLULAR PROTEOMICS (2014)

Article Biochemistry & Molecular Biology

Proteome analysis of roots of wheat seedlings under aluminum stress

Myeong Won Oh et al.

MOLECULAR BIOLOGY REPORTS (2014)

Article Plant Sciences

Plant Nutrition: Root Transporters on the Move

Enric Zelazny et al.

PLANT PHYSIOLOGY (2014)

Review Plant Sciences

Wheat proteomics: proteome modulation and abiotic stress acclimation

Setsuko Komatsu et al.

FRONTIERS IN PLANT SCIENCE (2014)

Article Biochemical Research Methods

Proteomic Analysis of Leaves and Roots of Common Wheat (Triticum aestivum L.) under Copper-Stress Conditions

Gezi Li et al.

JOURNAL OF PROTEOME RESEARCH (2013)

Article Biochemical Research Methods

Heterosis-associated proteome analyses of maize (Zea mays L.) seminal roots by quantitative label-free LC-MS

Caroline Marcon et al.

JOURNAL OF PROTEOMICS (2013)

Article Biochemistry & Molecular Biology

Deficiency in riboflavin biosynthesis affects tetrapyrrole biosynthesis in etiolated Arabidopsis tissue

Boris Hedtke et al.

PLANT MOLECULAR BIOLOGY (2012)

Review Biochemical Research Methods

Less label, more free: Approaches in label-free quantitative mass spectrometry

Karlie A. Neilson et al.

PROTEOMICS (2011)

Review Biochemical Research Methods

Role of spectral counting in quantitative proteomics

Deborah H. Lundgren et al.

EXPERT REVIEW OF PROTEOMICS (2010)

Article Agronomy

Heat and drought adaptive QTL in a wheat population designed to minimize confounding agronomic effects

R. Suzuky Pinto et al.

THEORETICAL AND APPLIED GENETICS (2010)

Article Engineering, Biomedical

Proteomics by Mass Spectrometry: Approaches, Advances, and Applications

John R. Yates et al.

Annual Review of Biomedical Engineering (2009)

Review Biochemistry & Molecular Biology

Carbon and nitrogen nutrient balance signaling in plants

Zhi-Liang Zheng

PLANT SIGNALING & BEHAVIOR (2009)

Review Biochemical Research Methods

Quantitative mass spectrometry in proteomics: a critical review

Marcus Bantscheff et al.

ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2007)

Review Agriculture, Multidisciplinary

Asparagine in plants

P. J. Lea et al.

ANNALS OF APPLIED BIOLOGY (2007)

Article Plant Sciences

The role of root architectural traits in adaptation of wheat to water-limited environments

Ahmad M. Manschadi et al.

FUNCTIONAL PLANT BIOLOGY (2006)