Related references
Note: Only part of the references are listed.Two divergent haplotypes from a highly heterozygous lychee genome suggest independent domestication events for early and late-maturing cultivars
Guibing Hu et al.
NATURE GENETICS (2022)
Altered metal distribution in the sr45-1 Arabidopsis mutant causes developmental defects
Steven Fanara et al.
PLANT JOURNAL (2022)
Transcriptional control of Arabidopsis seed development
Subodh Verma et al.
PLANTA (2022)
Transactivation of Sus1 and Sus2 by Opaque2 is an essential supplement to sucrose synthase-mediated endosperm filling in maize
Yiting Deng et al.
PLANT BIOTECHNOLOGY JOURNAL (2020)
DNA methylation in plants: mechanisms and tools for targeted manipulation
Javier Gallego-Bartolome
NEW PHYTOLOGIST (2020)
DNA methylation reprogramming during seed development and its functional relevance in seed size/weight determination in chickpea
Mohan Singh Rajkumar et al.
COMMUNICATIONS BIOLOGY (2020)
TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data
Chengjie Chen et al.
MOLECULAR PLANT (2020)
Molecular Networks of Seed Size Control in Plants
Na Li et al.
ANNUAL REVIEW OF PLANT BIOLOGY, VOL 70 (2019)
DNA methylation in Marchantia polymorpha
Adolfo Aguilar-Cruz et al.
NEW PHYTOLOGIST (2019)
Thermo-sensitive sterility and self-sterility underlie the partial seed abortion phenotype of Litchi chinensis
Dan-Rong Xie et al.
SCIENTIA HORTICULTURAE (2019)
Global increase in DNA methylation during orange fruit development and ripening
Huan Huang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
fastp: an ultra-fast all-in-one FASTQ preprocessor
Shifu Chen et al.
BIOINFORMATICS (2018)
Dynamics and function of DNA methylation in plants
Huiming Zhang et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2018)
Dynamic Changes of Genome-Wide DNA Methylation during Soybean Seed Development (vol 7, 12263, 2017)
Yong-qiang Charles An et al.
SCIENTIFIC REPORTS (2018)
Aberrant seed development in Litchi chinensis is associated with the impaired expression of cell wall invertase genes
Jieqiong Zhang et al.
HORTICULTURE RESEARCH (2018)
Populus trichocarpa PtNF-YA9, a Multifunctional Transcription Factor, Regulates Seed Germination, Abiotic Stress, Plant Growth and Development in Arabidopsis (vol 9, 954, 2018)
Conglong Lian et al.
FRONTIERS IN PLANT SCIENCE (2018)
Global transcriptome and coexpression network analyses reveal cultivar-specific molecular signatures associated with seed development and seed size/weight determination in chickpea
Rohini Garg et al.
PLANT JOURNAL (2017)
Critical roles of DNA demethylation in the activation of ripening-induced genes and inhibition of ripening-repressed genes in tomato fruit
Zhaobo Lang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Similarity between soybean and Arabidopsis seed methylomes and loss of non-CG methylation does not affect seed development
Jer-Young Lin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Transcriptome analyses reveal SR45 to be a neutral splicing regulator and a suppressor of innate immunity in Arabidopsis thaliana
Xiao-Ning Zhang et al.
BMC GENOMICS (2017)
Dynamic DNA methylation reconfiguration during seed development and germination
Taiji Kawakatsu et al.
GENOME BIOLOGY (2017)
DNA Methylation Affects Gene Alternative Splicing in Plants: An Example from Rice
Xutong Wang et al.
MOLECULAR PLANT (2016)
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
Mihaela Pertea et al.
NATURE PROTOCOLS (2016)
Seed birth to death: dual functions of reactive oxygen species in seed physiology
S. P. Jeevan Kumar et al.
ANNALS OF BOTANY (2015)
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
Mihaela Pertea et al.
NATURE BIOTECHNOLOGY (2015)
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim et al.
NATURE METHODS (2015)
Transcriptome-Wide Identification of RNA Targets of Arabidopsis SERINE/ARGININE-RICH45 Uncovers the Unexpected Roles of This RNA Binding Protein in RNA Processing
Denghui Xing et al.
PLANT CELL (2015)
Networks controlling seed size in Arabidopsis
Gregorio Orozco-Arroyo et al.
PLANT REPRODUCTION (2015)
Pollen Effects on Fruit Set, Seed Weight, and Shriveling of '73-S-20' Litchi- with Special Reference to Artificial Induction of Parthenocarpy
Yu-Chun Chu et al.
HORTSCIENCE (2015)
RNA-directed DNA methylation: an epigenetic pathway of increasing complexity
Marjori A. Matzke et al.
NATURE REVIEWS GENETICS (2014)
Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis
Hume Stroud et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2014)
Mutation of a major CG methylase in rice causes genome-wide hypomethylation, dysregulated genome expression, and seedling lethality
Lanjuan Hu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data
Shihao Shen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
New cross talk between ROS, ABA and auxin controlling seed maturation and germination unraveled in APX6 deficient Arabidopsis seeds
Changming Chen et al.
PLANT SIGNALING & BEHAVIOR (2014)
The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin
Assaf Zemach et al.
CELL (2013)
Genome-Wide Analysis of DNA Methylation in Soybean
Qing-Xin Song et al.
MOLECULAR PLANT (2013)
ABA signaling in stress-response and seed development
Kazuo Nakashima et al.
PLANT CELL REPORTS (2013)
NFYA1 Is Involved in Regulation of Postgermination Growth Arrest Under Salt Stress in Arabidopsis
Yan-Jie Li et al.
PLOS ONE (2013)
Drought and Salt Stress Tolerance of an Arabidopsis Glutathione S-Transferase U17 Knockout Mutant Are Attributed to the Combined Effect of Glutathione and Abscisic Acid
Jui-Hung Chen et al.
PLANT PHYSIOLOGY (2012)
methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles
Altuna Akalin et al.
GENOME BIOLOGY (2012)
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
Bo Li et al.
BMC BIOINFORMATICS (2011)
RNA-directed DNA methylation
Huiming Zhang et al.
CURRENT OPINION IN PLANT BIOLOGY (2011)
Selection of reliable reference genes for expression studies by reverse transcription quantitative real-time PCR in litchi under different experimental conditions
Hai-Ying Zhong et al.
PLANT CELL REPORTS (2011)
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
Julie A. Law et al.
NATURE REVIEWS GENETICS (2010)
Inactivation of a DNA Methylation Pathway in Maize Reproductive Organs Results in Apomixis-Like Phenotypes
Marcelina Garcia-Aguilar et al.
PLANT CELL (2010)
The Plant-Specific SR45 Protein Negatively Regulates Glucose and ABA Signaling during Early Seedling Development in Arabidopsis
Raquel Fonseca Carvalho et al.
PLANT PHYSIOLOGY (2010)
BSMAP: whole genome bisulfite sequence MAPping program
Yuanxin Li et al.
BMC BIOINFORMATICS (2009)
WGCNA: an R package for weighted correlation network analysis
Peter Langfelder et al.
BMC BIOINFORMATICS (2008)
DNA Methylation Causes Predominant Maternal Controls of Plant Embryo Growth
Jonathan FitzGerald et al.
PLOS ONE (2008)
Transgenerational stability of the Arabidopsis epigenome is coordinated by CG methylation
Olivier Mathieu et al.
CELL (2007)
STEM: a tool for the analysis of short time series gene expression data
J Ernst et al.
BMC BIOINFORMATICS (2006)
DNA methylation is critical for Arabidopsis embryogenesis and seed viability
WY Xiao et al.
PLANT CELL (2006)
Plant glutathione S-transferases:: enzymes with multiple functions in sickness and in health
R Edwards et al.
TRENDS IN PLANT SCIENCE (2000)