4.5 Article

Reconstructing the complex colonisation histories of lizards across Mediterranean archipelagos

Related references

Note: Only part of the references are listed.
Article Ecology

Near-shore island lizard fauna shaped by a combination of human-mediated and natural dispersal

Patricia E. Salerno et al.

Summary: This study combines phylogenetic analyses with fossil data and historical specimen records to investigate the colonization histories and evolutionary processes of lizards inhabiting a near-shore island archipelago. The results suggest that the evolution of some lizard lineages has been influenced by ancient and contemporary human activity, while others are shaped by natural dispersal and vicariance caused by sea-level rise.

JOURNAL OF BIOGEOGRAPHY (2023)

Article Multidisciplinary Sciences

Evolution of the germline mutation rate across vertebrates

Lucie A. Bergeron et al.

Summary: We sequenced and compared high-coverage genomes of 151 parent-offspring trios from 68 species of vertebrates and found that the per-generation mutation rate varies greatly among species, with males having higher rates than females in mammals and birds. We identified generation time, age at maturity, and species-level fecundity as key factors influencing this variation. Species with larger long-term effective population sizes tend to have lower mutation rates, supporting the drift barrier hypothesis. Domesticated animals with shorter generation times display exceptionally high yearly mutation rates, emphasizing the importance of generation time in mutation rate evolution.

NATURE (2023)

Article Biochemistry & Molecular Biology

Island Biogeography Revisited: Museomics Reveals Affinities of Shelf Island Birds Determined by Bathymetry and Paleo-Rivers, Not by Distance to Mainland

Kritika M. Garg et al.

Summary: The study used ancient DNA protocols to examine historic specimens of two Southeast Asian songbird complexes, revealing that genetic affinities of populations on small shelf islands are not influenced by geographic distance but rather by Earth-historic factors and the position of terrestrial barriers. Classic island biogeographic predictors may not accurately apply to population-genomic dynamics on the thousands of shelf islands around the world.

MOLECULAR BIOLOGY AND EVOLUTION (2022)

Article Biochemistry & Molecular Biology

Next-generation phylogeography resolves post-glacial colonization patterns in a widespread carnivore, the red fox (Vulpes vulpes), in Europe

Allan D. McDevitt et al.

Summary: This study used genome-wide data to reconstruct the phylogeographic history of the red fox, revealing the importance of refugial regions and testing post-glacial recolonization scenarios. The results suggest a natural colonization of Ireland during the early post-glacial period and point to ancient land-bridges in the colonization of the British Isles.

MOLECULAR ECOLOGY (2022)

Article Biochemistry & Molecular Biology

Dispersal, not vicariance, explains the biogeographic origin of iguanas on Madagascar

Rachel S. Welt et al.

Summary: The study found that the endemic lineage of iguanas on the isolated Indian Ocean island of Madagascar is closely related to the Leiosauridae in South America, suggesting a long-distance overwater dispersal of the Opluridae lineage. The divergence between Opluridae and Leiosauridae occurred between the late Cretaceous and mid-Paleogene, when Madagascar was already an isolated island from other Gondwanan landmasses.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2022)

Article Biochemistry & Molecular Biology

Evidence for ephemeral ring species formation during the diversification history of western fence lizards (Sceloporus occidentalis)

Nassima M. Bouzid et al.

Summary: The study reveals that the population divergence of the western fence lizard shows hierarchical structure geographically with evidence of gene flow, supporting the importance of isolation-expansion model in population history. Despite potential population divergence as they spread northward, there is evidence of gene flow among populations at the northern terminus.

MOLECULAR ECOLOGY (2022)

Review Plant Sciences

Plant Biogeography and Vegetation Patterns of the Mediterranean Islands

Frederic Medail

Summary: The Mediterranean Sea has a large number of islands and archipelagos, which play a significant role in the biodiversity of the region. These islands serve as both a museum for ancient plant lineages and a cradle for recent plant diversification. The complex historical biogeography and prehistoric human activities have profoundly shaped the current patterns of plant diversity in the Mediterranean islands.

BOTANICAL REVIEW (2022)

Article Ecology

Reptlslands: Mediterranean islands and the distribution of their reptile fauna

Anna Bonardi et al.

Summary: The study collected data on reptile distribution and geographical features on islands in the Mediterranean Basin and Macaronesia, serving as a valuable resource for biogeographical analyses and conservation studies.

GLOBAL ECOLOGY AND BIOGEOGRAPHY (2022)

Article Zoology

Molecular analysis of recently introduced populations of the Italian wall lizard (Podarcis siculus)

Oleksandra Oskyrko et al.

Summary: In recent decades, many reptile species have been introduced outside their native ranges, either accidentally or intentionally. The Italian wall lizard, native to Italy, has been introduced to several nearby islands and other regions. Molecular evidence shows that this species is able to establish populations outside its native range, and repeated human introductions promote lineage admixture and enhance their invasive potential.

ACTA HERPETOLOGICA (2022)

Article Biodiversity Conservation

Origin of introduced Italian wall lizards, Podarcis siculus (Rafinesque-Schmaltz, 1810) (Squamata: Lacertidae), in North America

Oleksandra Oskyrko et al.

Summary: Invasive species are a major cause of biodiversity loss worldwide. By studying the population growth and geographical range expansion of non-native lizard populations, we can understand the factors influencing their spatial spread, population growth, and invasion potential. The distribution of alien reptiles in North America is determined by a complex interplay between human activities, geographic factors, and species features. Genetic evidence is crucial for reliable biogeographic assessment of invasive species.

BIOINVASIONS RECORDS (2022)

Article Archaeology

Blowin' in the Wind: Settlement, Landscape and Network Dynamics in the Prehistory of the Aeolian Islands

Maria Clara Martinelli et al.

Summary: This study critically reviews the archaeological record of the Aeolian Islands in Italy from the mid-sixth millennium BC to the end of the second millennium BC, highlighting the interplay between different prehistoric practices, the crucial role of small island communities in establishing networks at various scales, and the islanders' long-term adaptability to environmental challenges. The research is supported by a new database of 50 prehistoric sites incorporating unpublished results of ongoing archaeological investigations.

JOURNAL OF MEDITERRANEAN ARCHAEOLOGY (2021)

Article Multidisciplinary Sciences

Genomic variation, population history and within-archipelago adaptation between island bird populations

Claudia A. Martin et al.

Summary: Oceanic island archipelagos offer valuable insights into evolutionary processes, with interactions between colonization events, gene flow, and selection shaping genetic variation at different spatial scales. Within the same geographical region, similar ecological factors may repeatedly drive selection between populations.

ROYAL SOCIETY OPEN SCIENCE (2021)

Article Biology

Bridgehead effect and multiple introductions shape the global invasion history of a termite

Alexander J. Blumenfeld et al.

Summary: The study reveals a complex invasion history of the Formosan subterranean termite, with multiple introductions from different regions in China shaping its global distribution. The Hawaiian population acted as a bridgehead for the introduction to the southeastern US, illustrating the pivotal role of bridgeheads in species distributions. Multiple introductions may have prevented and possibly reversed the loss of genetic diversity within the invasive range of the termite.

COMMUNICATIONS BIOLOGY (2021)

Article Ecology

Dispersal patterns of Squamata in the Mediterranean: An evolutionary perspective

Daniel Escoriza

Summary: The study explored the composition differences of squamate reptile assemblages across Mediterranean islands, finding no superior island-colonizer lineages in the Mediterranean Squamata group, but showing that small-sized lizards were superior to other groups of squamates at dispersing over long distances on the sea.

ECOLOGY AND EVOLUTION (2021)

Article Evolutionary Biology

Invasion and rapid adaptation of guppies (Poecilia reticulata) across the Hawaiian Archipelago

William C. Rosenthal et al.

Summary: This study investigates the impact of natural selection on the evolution of non-native guppy populations in the Hawaiian Islands, suggesting that local adaptation plays a key role in invasion success. Evidence of low gene flow between populations indicates that removal could be an effective strategy for controlling invasive guppies across the Hawaiian archipelago.

EVOLUTIONARY APPLICATIONS (2021)

Article Multidisciplinary Sciences

The human dimension of biodiversity changes on islands

Sandra Nogue et al.

Summary: Islands are among the last regions on Earth to be settled and transformed by human activities, and research shows that vegetation change on islands accelerates significantly after human arrival. This global acceleration in turnover suggests that islands are continuously undergoing change, highlighting the importance of considering long-term human impacts in strategies for biodiversity conservation and ecosystem restoration.

SCIENCE (2021)

Article Biochemical Research Methods

fastsimcoal2: demographic inference under complex evolutionary scenarios

Laurent Excofffier et al.

Summary: fastsimcoal2 extends fastsimcoal by enabling estimation of demographic parameters under complex scenarios, with improvements such as multi-threading, handling of population inbreeding, extended input file syntax, and more efficient simulations.

BIOINFORMATICS (2021)

Article Biochemistry & Molecular Biology

Demographic history and patterns of molecular evolution from whole genome sequencing in the radiation of Galapagos giant tortoises

Evelyn L. Jensen et al.

Summary: By sequencing whole genomes of Galapagos giant tortoises, researchers have found differences in evolutionary patterns among lineages and correlations between mutation accumulation rates and population size/life history traits. Integrating previous studies with new genomic analyses has provided the most in-depth insights to date on the evolution of Galapagos giant tortoises, showing discrepancies between population genetic theory and empirical data.

MOLECULAR ECOLOGY (2021)

Article Biochemistry & Molecular Biology

Fossil-calibrated time tree of Podarcis wall lizards provides limited support for biogeographic calibration models

Daniele Salvi et al.

Summary: Podarcis wall lizards are endemic to the Mediterranean Basin, with their diversification occurring rapidly during the Middle Miocene, associated with European climate changes and geological history. Multiple dispersal and vicariant events at different time frames are needed to explain current allopatric distributions and Mediterranean biota assembly, cautioning against biogeographic calibrations based on the assumption of vicariance.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2021)

Article Multidisciplinary Sciences

Status of the largest extant population of the critically endangered Aeolian lizard Podarcis raffonei (Capo Grosso, Vulcano island)

Gentile Francesco Ficetola et al.

Summary: The Aeolian wall lizard Podarcis raffonei is an island endemic with a declining population on the Capo Grosso peninsula of Vulcano island, possibly due to competition and hybridization with non-native lizard species. Urgent monitoring and management plans are needed for this species.

PLOS ONE (2021)

Article Biochemical Research Methods

OptM: estimating the optimal number of migration edges on population trees using Treemix

Robert R. Fitak

Summary: The study shows that inferring the optimal number of migration events in population trees can be achieved by examining the second-order rate of change in likelihood (Δm), which performs equally well as current recommendations for Treemix. This method may be preferable in large, complex population histories.

BIOLOGY METHODS & PROTOCOLS (2021)

Article Biodiversity Conservation

Alien reptiles on Mediterranean Islands: A model for invasion biogeography

Iolanda Raquel Silva-Rocha et al.

DIVERSITY AND DISTRIBUTIONS (2019)

Article Biochemistry & Molecular Biology

Unravelling the invasion history of the Asian tiger mosquito in Europe

Stephanie Sherpa et al.

MOLECULAR ECOLOGY (2019)

Article Biochemistry & Molecular Biology

Stacks 2: Analytical methods for paired-end sequencing improve RADseq-based population genomics

Nicolas C. Rochette et al.

MOLECULAR ECOLOGY (2019)

Letter Biochemistry & Molecular Biology

Historic DNA reveals Anthropocene threat to a tropical urban fruit bat

Balaji Chattopadhyay et al.

CURRENT BIOLOGY (2019)

Review Biotechnology & Applied Microbiology

Conservation of biodiversity in the genomics era

Megan A. Supple et al.

GENOME BIOLOGY (2018)

Article Anthropology

Ancient Biological Invasions and Island Ecosystems: Tracking Translocations of Wild Plants and Animals

Courtney A. Hofman et al.

JOURNAL OF ARCHAEOLOGICAL RESEARCH (2018)

Article Multidisciplinary Sciences

No saturation in the accumulation of alien species worldwide

Hanno Seebens et al.

NATURE COMMUNICATIONS (2017)

Article Ecology

A global picture of biological invasion threat on islands

Celine Bellard et al.

NATURE ECOLOGY & EVOLUTION (2017)

Article Biodiversity Conservation

Diversity, biogeography and the global flows of alien amphibians and reptiles

Cesar Capinha et al.

DIVERSITY AND DISTRIBUTIONS (2017)

Article Biodiversity Conservation

What constitutes a 'native' species? Insights from the Quaternary faunal record

Jennifer J. Crees et al.

BIOLOGICAL CONSERVATION (2015)

Article Biochemistry & Molecular Biology

Hybridization promotes speciation in Coenonympha butterflies

Thibaut Capblancq et al.

MOLECULAR ECOLOGY (2015)

Article Multidisciplinary Sciences

The dispersal of alien species redefines biogeography in the Anthropocene

Cesar Capinha et al.

SCIENCE (2015)

Article Biochemistry & Molecular Biology

Population size and time since island isolation determine genetic diversity loss in insular frog populations

Supen Wang et al.

MOLECULAR ECOLOGY (2014)

Article Multidisciplinary Sciences

Island biogeography of the Anthropocene

Matthew R. Helmus et al.

NATURE (2014)

Article Multidisciplinary Sciences

Maritime route of colonization of Europe

Peristera Paschou et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Review Genetics & Heredity

Genomic signatures of selection at linked sites: unifying the disparity among species

Asher D. Cutter et al.

NATURE REVIEWS GENETICS (2013)

Article Genetics & Heredity

Robust Demographic Inference from Genomic and SNP Data

Laurent Excoffier et al.

PLOS GENETICS (2013)

Article Genetics & Heredity

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

Joseph K. Pickrell et al.

PLOS GENETICS (2012)

Article Biochemistry & Molecular Biology

Mitochondrial phylogeography of the Bedriaga's rock lizard, Archaeolacerta bedriagae (Reptilia: Lacertidae) endemic to Corsica and Sardinia

Daniele Salvi et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2010)

Article Biochemistry & Molecular Biology

Fast model-based estimation of ancestry in unrelated individuals

David H. Alexander et al.

GENOME RESEARCH (2009)

Article Ecology

Human activities alter biogeographical patterns of reptiles on Mediterranean islands

Gentile Francesco Ficetola et al.

GLOBAL ECOLOGY AND BIOGEOGRAPHY (2009)

Review Multidisciplinary Sciences

Adaptation and diversification on islands

Jonathan B. Losos et al.

NATURE (2009)

Review Ecology

Something in the way you move: dispersal pathways affect invasion success

John R. U. Wilson et al.

TRENDS IN ECOLOGY & EVOLUTION (2009)

Article Biochemical Research Methods

adegenet:: a R package for the multivariate analysis of genetic markers

Thibaut Jombart

BIOINFORMATICS (2008)

Article Evolutionary Biology

Phylogeography and morphological variability in land snails:: the Sicilian Marmorana (Pulmonata, Helicidae)

Viviana Fiorentino et al.

BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2008)

Article Multidisciplinary Sciences

Domestication and early agriculture in the Mediterranean Basin: Origins, diffusion, and impact

Melinda A. Zeder

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemistry & Molecular Biology

Out of Cuba:: overwater dispersal and speciation among lizards in the Anolis carolinensis subgroup

RE Glor et al.

MOLECULAR ECOLOGY (2005)

Review Genetics & Heredity

Phylogenomics and the reconstruction of the tree of life

F Delsuc et al.

NATURE REVIEWS GENETICS (2005)

Article Biochemistry & Molecular Biology

HIERFSTAT, a package for R to compute and test hierarchical F-statistics

J Goudet

MOLECULAR ECOLOGY NOTES (2005)

Article Biochemistry & Molecular Biology

Phylogeography of the Italian wall lizard, Podarcis sicula, as revealed by mitochondrial DNA sequences

M Podnar et al.

MOLECULAR ECOLOGY (2005)

Article Biology

Genetic consequences of climatic oscillations in the Quaternary

GM Hewitt

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2004)

Article Evolutionary Biology

Mitochondrial phylogeography of the Dalmatian wall lizard, Podarcis melisellensis (Lacertidae)

M Podnar et al.

ORGANISMS DIVERSITY & EVOLUTION (2004)

Article Geography, Physical

Sea-level and deep water temperature changes derived from benthic foraminifera isotopic records

C Waelbroeck et al.

QUATERNARY SCIENCE REVIEWS (2002)

Review Multidisciplinary Sciences

The genetic legacy of the Quaternary ice ages

G Hewitt

NATURE (2000)