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Transcriptome-Wide Identification of RNA Targets of Arabidopsis SERINE/ARGININE-RICH45 Uncovers the Unexpected Roles of This RNA Binding Protein in RNA Processing
Denghui Xing et al.
PLANT CELL (2015)
Genome-Wide Analysis of Alternative Splicing Landscapes Modulated during Plant-Virus Interactions in Brachypodium distachyon
Kranthi K. Mandadi et al.
PLANT CELL (2015)
The spliceosome assembly factor GEMIN2 attenuates the effects of temperature on alternative splicing and circadian rhythms
Ruben Gustavo Schlaen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
An alternative splicing event amplifies evolutionary differences between vertebrates
Serge Gueroussov et al.
SCIENCE (2015)
Alternative splicing and nonsense-mediated decay of circadian clock genes under environmental stress conditions in Arabidopsis
Young-Ju Kwon et al.
BMC PLANT BIOLOGY (2014)
Widespread intron retention in mammals functionally tunes transcriptomes
Ulrich Braunschweig et al.
GENOME RESEARCH (2014)
Discovery and Expression Analysis of Alternative Splicing Events Conserved among Plant SR Proteins
Hypaitia B. Rauch et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Correcting for Differential Transcript Coverage Reveals a Strong Relationship between Alternative Splicing and Organism Complexity
Lu Chen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features
Yiliang Ding et al.
NATURE (2014)
The devil in the details of RNA-seq
Anton Kratz et al.
NATURE BIOTECHNOLOGY (2014)
Genome-Wide Analysis of Alternative Splicing in Zea mays: Landscape and Genetic Regulation
Shawn R. Thatcher et al.
PLANT CELL (2014)
Global Dissection of Alternative Splicing in Paleopolyploid Soybean
Yanting Shen et al.
PLANT CELL (2014)
Role for LSM genes in the regulation of circadian rhythms
Soledad Perez-Santangelo et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data
Shihao Shen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Genome-wide survey of Alternative Splicing in Sorghum Bicolor
Bahman Panahi et al.
PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS (2014)
Removal of Retained Introns Regulates Translation in the Rapidly Developing Gametophyte of Marsilea vestita
Thomas C. Boothby et al.
DEVELOPMENTAL CELL (2013)
Assessment of transcript reconstruction methods for RNA-seq
Tamara Steijger et al.
NATURE METHODS (2013)
Alternative Splicing at the Intersection of Biological Timing, Development, and Stress Responses
Dorothee Staiger et al.
PLANT CELL (2013)
Complexity of the Alternative Splicing Landscape in Plants
Anireddy S. N. Reddy et al.
PLANT CELL (2013)
Drift and conservation of differential exon usage across tissues in primate species
Alejandro Reyes et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Coordinated regulation of neuronal mRNA steady-state levels through developmentally controlled intron retention
Karen Yap et al.
GENES & DEVELOPMENT (2012)
Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for IncRNAs
Hagen Tilgner et al.
GENOME RESEARCH (2012)
Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis
Yamile Marquez et al.
GENOME RESEARCH (2012)
Contribution of the different omega-3 fatty acid desaturase genes to the cold response in soybean
Angela Roman et al.
JOURNAL OF EXPERIMENTAL BOTANY (2012)
MATS: a Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data
Shihao Shen et al.
NUCLEIC ACIDS RESEARCH (2012)
Mutation of Arabidopsis SPLICEOSOMAL TIMEKEEPER LOCUS1 Causes Circadian Clock Defects
Matthew A. Jones et al.
PLANT CELL (2012)
Alternative Splicing Mediates Responses of the Arabidopsis Circadian Clock to Temperature Changes
Allan B. James et al.
PLANT CELL (2012)
SKIP Is a Component of the Spliceosome Linking Alternative Splicing and the Circadian Clock in Arabidopsis
Xiaoxue Wang et al.
PLANT CELL (2012)
A Self-Regulatory Circuit of CIRCADIAN CLOCK-ASSOCIATED1 Underlies the Circadian Clock Regulation of Temperature Responses in Arabidopsis
Pil Joon Seo et al.
PLANT CELL (2012)
Interactions of SR45, an SR-like protein, with spliceosomal proteins and an intronic sequence: insights into regulated splicing
Irene S. Day et al.
PLANT JOURNAL (2012)
Identification of an intronic splicing regulatory element involved in auto-regulation of alternative splicing of SCL33 pre-mRNA
Julie Thomas et al.
PLANT JOURNAL (2012)
Localization and Dynamics of Nuclear Speckles in Plants
Anireddy S. N. Reddy et al.
PLANT PHYSIOLOGY (2012)
Alternative splicing: Enhancing ability to cope with stress via transcriptome plasticity
Anna M. Mastrangelo et al.
PLANT SCIENCE (2012)
Identification and characterization of the soybean IPK1 ortholog of a low phytic acid mutant reveals an exon-excluding splice-site mutation
Feng-Jie Yuan et al.
THEORETICAL AND APPLIED GENETICS (2012)
SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data
Mark F. Rogers et al.
GENOME BIOLOGY (2012)
The evolution of gene expression levels in mammalian organs
David Brawand et al.
NATURE (2011)
Coping with Stresses: Roles of Calcium- and Calcium/Calmodulin-Regulated Gene Expression
Anireddy S. N. Reddy et al.
PLANT CELL (2011)
Identification and development of a functional marker of TaGW2 associated with grain weight in bread wheat (Triticum aestivum L.)
Zhenqi Su et al.
THEORETICAL AND APPLIED GENETICS (2011)
Plant serine/arginine-rich proteins: roles in precursor messenger RNA splicing, plant development, and stress responses
Anireddy S. N. Reddy et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2011)
A role for SR proteins in plant stress responses
Paula Duque
PLANT SIGNALING & BEHAVIOR (2011)
Genome-wide mapping of alternative splicing in Arabidopsis thaliana
Sergei A. Filichkin et al.
GENOME RESEARCH (2010)
A methyl transferase links the circadian clock to the regulation of alternative splicing
Sabrina E. Sanchez et al.
NATURE (2010)
Analysis and design of RNA sequencing experiments for identifying isoform regulation
Yarden Katz et al.
NATURE METHODS (2010)
Extensive coupling of alternative splicing of pre-mRNAs of serine/arginine (SR) genes with nonsense-mediated decay
Saiprasad G. Palusa et al.
NEW PHYTOLOGIST (2010)
Type II protein arginine methyltransferase 5 (PRMT5) is required for circadian period determination in Arabidopsis thaliana
Sunghyun Hong et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
The SR protein family of splicing factors: master regulators of gene expression
Jennifer C. Long et al.
BIOCHEMICAL JOURNAL (2009)
Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches
Mo Chen et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2009)
CIRCADIAN CLOCK ASSOCIATED1 and LATE ELONGATED HYPOCOTYL Function Synergistically in the Circadian Clock of Arabidopsis
Sheen X. Lu et al.
PLANT PHYSIOLOGY (2009)
Co-localisation studies of Arabidopsis SR splicing factors reveal different types of speckles in plant cell nuclei
Zdravko J. Lorkovic et al.
EXPERIMENTAL CELL RESEARCH (2008)
Genome-wide analyses of alternative splicing in plants: Opportunities and challenges
W. Brad Barbazuk et al.
GENOME RESEARCH (2008)
Analyses of In Vivo Interaction and Mobility of Two Spliceosomal Proteins Using FRAP and BiFC
Gul Shad Ali et al.
PLOS ONE (2008)
Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements
Liana F. Lareau et al.
NATURE (2007)
Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins: regulation by hormones and stresses
Saiprasad Goud Palusa et al.
PLANT JOURNAL (2007)
The evolutionary significance of cis-regulatory mutations
Gregory A. Wray
NATURE REVIEWS GENETICS (2007)
Insights into nuclear organization in plants as revealed by the dynamic distribution of Arabidopsis SR splicing factors
Vinciane Tillemans et al.
PLANT CELL (2006)
Evolutionary conservation and regulation of particular alternative splicing events in plant SR proteins
Maria Kalyna et al.
NUCLEIC ACIDS RESEARCH (2006)
Genomewide comparative analysis of alternative splicing in plants
BB Wang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
ATP, phosphorylation and transcription regulate the mobility of plant splicing factors
Gul Shad Ali et al.
JOURNAL OF CELL SCIENCE (2006)
Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences
K Iida et al.
NUCLEIC ACIDS RESEARCH (2004)
Tissue-specific expression and dynamic organization of SR splicing factors in Arabidopsis
YD Fang et al.
MOLECULAR BIOLOGY OF THE CELL (2004)
Nuclear localization and in vivo dynamics of a plant-specific serine/arginine-rich protein
GS Ali et al.
PLANT JOURNAL (2003)
Ectopic expression of atRSZ33 reveals its function in splicing and causes pleiotropic changes in development
M Kalyna et al.
MOLECULAR BIOLOGY OF THE CELL (2003)