4.7 Article

OsBTBZ1 Confers Salt Stress Tolerance in Arabidopsis thaliana

Related references

Note: Only part of the references are listed.
Article Plant Sciences

Identification of candidate genes for salinity tolerance in Japonica rice at the seedling stage based on genome-wide association study and linkage mapping

Shanbin Xu et al.

Summary: In this study, a candidate gene LOC_Os12g34450 was identified for salinity tolerance in Japonica rice through genome-wide association study and linkage mapping.

FRONTIERS IN PLANT SCIENCE (2023)

Article Plant Sciences

Identification of Candidate Genes for Salt Tolerance at the Seedling Stage Using Integrated Genome-Wide Association Study and Transcriptome Analysis in Rice

Tae-Heon Kim et al.

Summary: Salt stress is a major constraint in rice production, causing annual losses of 30-50% in yield. Salt-resistance genes play a crucial role in controlling salt stress. A genome-wide association study identified four QTLs associated with salt tolerance in a MAGIC population, located on chromosomes 1, 2, and 9. These findings contribute to a better understanding of salt tolerance mechanisms and the development of DNA markers for marker-assisted selection (MAS) breeding in rice breeding programs.

PLANTS-BASEL (2023)

Article Biochemistry & Molecular Biology

Identification of a Negative Regulator for Salt Tolerance at Seedling Stage via a Genome-Wide Association Study of Thai Rice Populations

Thammaporn Kojonna et al.

Summary: This study identified genes responsible for salt tolerance in Thai rice populations through genome-wide association study. OsCRN, acting as a negative regulator, plays an important role in enhancing salt tolerance by maintaining photosynthetic pigment content and relative water content.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2022)

Article Plant Sciences

Role of LOC_Os01g68450, Containing DUF2358, in Salt Tolerance Is Mediated via Adaptation of Absorbed Light Energy Dissipation

Chutarat Punchkhon et al.

Summary: This study investigated the functions of eight genes involved in photosynthesis under salt stress conditions using gene co-expression network analysis. The results showed that the expression of the LOC 0s01g68450 gene improved photosynthesis and salt tolerance in plants.

PLANTS-BASEL (2022)

Review Plant Sciences

A Review of Integrative Omic Approaches for Understanding Rice Salt Response Mechanisms

Mohammad Asad Ullah et al.

Summary: Soil salinity is a major challenge for agriculture, especially for rice production. Improving rice varieties' resistance to salt stress through multi-omics approaches is crucial for meeting global food demand. The integration of multi-omics data and artificial intelligence can lead to a better understanding of the molecular mechanisms and facilitate precision breeding methods for salt-resistant rice.

PLANTS-BASEL (2022)

Article Plant Sciences

Combining GWAS, Genome-Wide Domestication and a Transcriptomic Analysis Reveals the Loci and Natural Alleles of Salt Tolerance in Rice (Oryza sativa L.)

Yang Lv et al.

Summary: This study evaluated the salt tolerance of 191 mini-core rice populations worldwide and identified significant SNPs and genes associated with salt sensitivity through genome-wide association study. Transcriptomic analysis provided additional candidate genes. These findings will contribute to the development of salt tolerant rice varieties.

FRONTIERS IN PLANT SCIENCE (2022)

Review Plant Sciences

Histone modification and chromatin remodeling in plant response to pathogens

Huijia Kang et al.

Summary: Plants, as sessile organisms, are constantly exposed to diverse stresses, including pathogen invasion. Recent studies have found that pathogen infections can induce epigenetic changes in plants, leading to the reprogramming of plant defense genes. These mechanisms could be used in the design of stress-resistant plant varieties.

FRONTIERS IN PLANT SCIENCE (2022)

Article Agronomy

Identification of Candidate Genes for Salt Tolerance at the Germination Stage in Japonica Rice by Genome-Wide Association Analysis

Yuxuan Duan et al.

Summary: This study screened 21 rice varieties with strong salt tolerance and identified 40 QTL loci significantly associated with salt tolerance at the germination stage through genome-wide association analysis, providing a theoretical basis for improving rice salt tolerance in saline soils.

AGRICULTURE-BASEL (2022)

Article Biochemistry & Molecular Biology

Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice

Farhan Ullah et al.

Summary: HDA710 plays a role in regulating salt and ABA stress-responsive genes in rice by altering H4 acetylation levels in their promoters, with knockout and overexpression of HDA710 resulting in opposite stress tolerance phenotypes.

JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2021)

Review Biochemistry & Molecular Biology

Protein kinases in plant responses to drought, salt, and cold stress

Xuexue Chen et al.

Summary: Protein kinases play crucial roles in plant stress responses, and research progress on signal perception and transduction is essential. Future challenges include a deeper understanding of the mechanisms of action of protein kinases such as SNRKs, MAPK, CDPKs/CPKs, and RLKs in stress responses.

JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2021)

Article Biochemistry & Molecular Biology

The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets

Damian Szklarczyk et al.

Summary: The STRING database integrates various associations between proteins, including physical interactions and functional associations, by collecting evidence from sources such as literature, databases, computational predictions, and systematic transfers. STRING aims for wide coverage and provides extensive user interface features and querying methods for experimental data.

NUCLEIC ACIDS RESEARCH (2021)

Article Agronomy

Genome-Wide Association Study (GWAS) to Identify Salt-Tolerance QTLs Carrying Novel Candidate Genes in Rice During Early Vegetative Stage

Leila Nayyeripasand et al.

Summary: This study identified rice genomic regions associated with early stage salinity tolerance and candidate genes using genome-wide association study. The identified genes can be used for improving salinity tolerance in rice breeding programs and further study can help uncover the mechanisms of salinity tolerance at molecular level.
Article Biochemistry & Molecular Biology

Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

Ivica Letunic et al.

Summary: The Interactive Tree Of Life is an online tool for displaying, manipulating, and annotating phylogenetic and other trees. The latest version 5 introduces a new tree display engine and several new features, such as a new dataset type and expanded annotation options. Users can now also manually annotate trees by hand, providing more flexibility and control.

NUCLEIC ACIDS RESEARCH (2021)

Article Plant Sciences

Genome-Wide Association Study Reveals Marker-Trait Associations for Early Vegetative Stage Salinity Tolerance in Rice

Ashutosh Kumar Yadav et al.

Summary: The study identified 11 rice accessions with high salt tolerance at the seedling stage and discovered 23 marker-trait associations through genome-wide association study (GWAS). These associations were found on multiple rice chromosomes and included both previously reported quantitative trait loci (QTLs) and novel associations. Additionally, several candidate genes associated with salinity tolerance were identified within genomic regions surrounding the novel marker-trait associations.

PLANTS-BASEL (2021)

Review Biochemistry & Molecular Biology

The Roles of CCCH Zinc-Finger Proteins in Plant Abiotic Stress Tolerance

Guoliang Han et al.

Summary: CCCH zinc-finger proteins play essential roles in regulating plant growth, development, and stress adaptation, especially in response to abiotic stress. By interacting with DNA, RNA, and other proteins, they regulate transcriptional and post-transcriptional processes in plants, enhancing tolerance to adverse environments like salt, drought, flooding, cold temperatures, and oxidative stress. Further exploration of the molecular mechanisms of CCCH zinc-finger proteins will facilitate breeding and genetic engineering of crops with improved traits.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2021)

Article Plant Sciences

Combining Genome and Gene Co-expression Network Analyses for the Identification of Genes Potentially Regulating Salt Tolerance in Rice

Panita Chutimanukul et al.

Summary: This study demonstrated an effective transcriptomic approach for identifying salt tolerance genes in rice, identifying 92 potential genes through different algorithms. Differential gene expression between CSSL16 and KDML105 was observed, with OsBTBZ1 and OsERD being identified by three methods simultaneously.

FRONTIERS IN PLANT SCIENCE (2021)

Review Plant Sciences

CUL3 E3 ligases in plant development and environmental response

Zhaonan Ban et al.

Summary: Thirty years of research have shown the crucial role of the ubiquitin-proteasome system in cellular regulation, particularly highlighting the significance of CRL3 E3 ligases. Their essential role in various biological processes, as explored in this comprehensive review, demonstrates the intricate cooperation of different E3 ligases in regulating specific pathways or processes.

NATURE PLANTS (2021)

Article Plant Sciences

Rice GWAS reveals key genomic regions essential for salinity tolerance at reproductive stage

Arvinder Singh Warraich et al.

ACTA PHYSIOLOGIAE PLANTARUM (2020)

Article Plant Sciences

The Sweetpotato BTB-TAZ Protein Gene,IbBT4, Enhances Drought Tolerance in TransgenicArabidopsis

Yuanyuan Zhou et al.

FRONTIERS IN PLANT SCIENCE (2020)

Review Genetics & Heredity

Advances in Transcriptomics in the Response to Stress in Plants

Xiaojuan Wang et al.

GLOBAL MEDICAL GENETICS (2020)

Article Biochemistry & Molecular Biology

Function analysis and stress-mediatedcis-element identification in the promoter region ofVqMYB15

Ruixiang Li et al.

PLANT SIGNALING & BEHAVIOR (2020)

Editorial Material Plant Sciences

Bananas tackling drought and heat - with DREBs and more

Anirban Baral

PHYSIOLOGIA PLANTARUM (2019)

Review Plant Sciences

MYB Repressors as Regulators of Phenylpropanoid Metabolism in Plants

Dawei Ma et al.

TRENDS IN PLANT SCIENCE (2019)

Article Biochemistry & Molecular Biology

Identification of novel cis-elements bound by BpIMYB46 involved in abiotic stress responses and secondary wall deposition

Huiyan Guo et al.

JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2018)

Article Biochemistry & Molecular Biology

A Genome-Wide Association Study Reveals Candidate Genes Related to Salt Tolerance in Rice (Oryza sativa) at the Germination Stage

Jie Yu et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2018)

Review Plant Sciences

WRKY Transcription Factors: Molecular Regulation and Stress Responses in Plants

Ujjal J. Phukan et al.

FRONTIERS IN PLANT SCIENCE (2016)

Review Biochemistry & Molecular Biology

Impact of Post-Translational Modifications of Crop Proteins under Abiotic Stress

Akiko Hashiguchi et al.

PROTEOMES (2016)

Article Agronomy

Mapping of Quantitative Trait Loci Associated with Reproductive-Stage Salt Tolerance in Rice

H. Hossain et al.

JOURNAL OF AGRONOMY AND CROP SCIENCE (2015)

Article Biotechnology & Applied Microbiology

Mapping QTLs for Traits Related to Salinity Tolerance at Seedling Stage of Rice (Oryza sativa L.): An Agrigenomics Study of an Iranian Rice Population

Khadijeh Ghomi et al.

OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2013)

Review Plant Sciences

ABA signaling in stress-response and seed development

Kazuo Nakashima et al.

PLANT CELL REPORTS (2013)

Article Biochemistry & Molecular Biology

Phytozome: a comparative platform for green plant genomics

David M. Goodstein et al.

NUCLEIC ACIDS RESEARCH (2012)

Review Plant Sciences

Role of DREBs in regulation of abiotic stress responses in plants

Charu Lata et al.

JOURNAL OF EXPERIMENTAL BOTANY (2011)

Article Biotechnology & Applied Microbiology

Differential expression analysis for sequence count data

Simon Anders et al.

GENOME BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Arabidopsis thaliana BTB/POZ-MATH proteins interact with members of the ERF/AP2 transcription factor family

Henriette Weber et al.

FEBS JOURNAL (2009)

Article Biochemistry & Molecular Biology

The TIGR Rice Genome Annotation Resource: Improvements and new features

Shu Ouyang et al.

NUCLEIC ACIDS RESEARCH (2007)

Review Biochemistry & Molecular Biology

Born to bind: the BTB protein-protein interaction domain

Roberto Perez-Torrado et al.

BIOESSAYS (2006)

Article Plant Sciences

Oryzabase. An integrated biological and genome information database for rice

N Kurata et al.

PLANT PHYSIOLOGY (2006)

Review Plant Sciences

Organization of cis-acting regulatory elements in osmotic- and cold-stress-responsive promoters

K Yamaguchi-Shinozaki et al.

TRENDS IN PLANT SCIENCE (2005)

Review Plant Sciences

Improving crop salt tolerance

TJ Flowers

JOURNAL OF EXPERIMENTAL BOTANY (2004)

Article Agronomy

QTLs for Na+ and K+ uptake of the shoots and roots controlling rice salt tolerance

HX Lin et al.

THEORETICAL AND APPLIED GENETICS (2004)

Article Biochemistry & Molecular Biology

The KEGG databases at GenomeNet

M Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2002)

Article Biochemistry & Molecular Biology

A new mathematical model for relative quantification in real-time RT-PCR

MW Pfaffl

NUCLEIC ACIDS RESEARCH (2001)