4.7 Article

Insight into gene expression associated with DNA methylation and small RNA in the rhizome-root system of Moso bamboo

Related references

Note: Only part of the references are listed.
Article Plant Sciences

Transcriptome and miRNAome analysis reveals components regulating tissue differentiation of bamboo shoots

Ying Li et al.

Summary: This study analyzed the regulatory networks involved in primary thickening and their dynamics during bamboo growth, revealing the role of miRNA-gene-phytohormone networks. The findings provide insights into the molecular mechanisms underlying wood formation and properties in bamboo.

PLANT PHYSIOLOGY (2022)

Article Plant Sciences

Cellular differentiation, hormonal gradient, and molecular alternation between the division zone and the elongation zone of bamboo internodes

Lin Guo et al.

Summary: Bamboo differentiates between a cell division zone and a cell elongation zone during rapid growth. The cell wall and organelles such as chloroplasts are more developed in the cell elongation zone, while hydrogen peroxide and stomata are concentrated in this zone. Hormone levels, including gibberellin, auxin, cytokinin, and brassinosteroid, are higher in the cell division zone, whereas salicylic acid and jasmonic acid levels are higher in the cell elongation zone. Transcriptome analysis reveals differential gene expression, with cell division and primary metabolism genes being upregulated in the cell division zone, and photosynthesis, cell wall growth, and secondary metabolism genes being significantly upregulated in the cell elongation zone. Overexpression of the transcription factor BmMYB83 promotes cell wall lignification.

PHYSIOLOGIA PLANTARUM (2022)

Article Biochemistry & Molecular Biology

Rapid growth of Moso bamboo (Phyllostachys edulis): Cellular roadmaps, transcriptome dynamics, and environmental factors

Ming Chen et al.

Summary: The rapid growth of Moso bamboo is associated with cell division and elongation, gibberellin, cytokinin, auxin, abscisic acid, and mechanical pressure. This study provides insight into the mechanisms underlying the rapid growth of Moso bamboo.

PLANT CELL (2022)

Article Forestry

Cellular and molecular characterizations of the irregular internode division zone formation of a slow-growing bamboo variant

Zhipeng Gao et al.

Summary: This study discovered a bamboo variant called sgv, which exhibits irregular growth in internodes, and revealed the molecular mechanisms behind it. Transcriptome sequencing analysis found that genes related to cell wall biogenesis and cell division were significantly downregulated in the internode division zone of sgv, while defects in the brassinosteroid signaling pathway might be the cause of these irregularities.

TREE PHYSIOLOGY (2022)

Article Plant Sciences

Whole-genome characterization of chronological age-associated changes in methylome and circular RNAs in moso bamboo (Phyllostachys edulis) from vegetative to floral growth

Zeyu Zhang et al.

Summary: The study found that CHH methylation gradually accumulates during the transition from vegetative to reproductive growth in moso bamboo, with differentially methylated regions mainly occurring at transcription start and termination sites. Genes with CG methylation changes are enriched in 'vegetative to reproductive phase transition of meristem' GO categories, while circRNA flanking introns are hypermethylated and enriched in LTR retrotransposons.

PLANT JOURNAL (2021)

Review Biochemistry & Molecular Biology

Multiple Functions of MYB Transcription Factors in Abiotic Stress Responses

Xiaopei Wang et al.

Summary: Plants face a more volatile environment due to their immobility, prompting the development of efficient mechanisms to adapt to stress. MYB transcription factors, a widespread family in plants, play critical roles in plant development and responses to stresses. Multiple studies have shown that MYB proteins are involved in diverse roles in responses to abiotic stresses, but their regulatory mechanism is still not well understood.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2021)

Article Forestry

Multi-analysis of sheath senescence provides new insights into bamboo shoot development at the fast growth stage

Ming Chen et al.

Summary: Sheath senescence is a complex process during bamboo shoot development, involving chloroplast corruption, chlorophyll degradation, and water loss. Reactove oxygen species, salicylic acid, and abscisic acid accumulate in the senescing sheath. Hexokinase genes may trigger sheath senescence, while sugar accumulation in the sheath possibly plays a role in initiating this process. These findings provide new insights into the regulation of sheath senescence and its relationship with internode growth during bamboo shoot development.

TREE PHYSIOLOGY (2021)

Review Genetics & Heredity

Small RNAs in the Transgenerational Inheritance of Epigenetic Information

Lea Duempelmann et al.

TRENDS IN GENETICS (2020)

Article Biotechnology & Applied Microbiology

DNA methylation and its effects on gene expression during primary to secondary growth in poplar stems

Yang Zhang et al.

BMC GENOMICS (2020)

Article Multidisciplinary Sciences

Antagonistic regulation of the gibberellic acid response during stem growth in rice

Keisuke Nagai et al.

NATURE (2020)

Article Multidisciplinary Sciences

DNA methylation is reconfigured at the onset of reproduction in rice shoot apical meristem

Asuka Higo et al.

NATURE COMMUNICATIONS (2020)

Review Plant Sciences

Regulation of genome-wide DNA methylation by mobile small RNAs

Muluneh Tamiru et al.

NEW PHYTOLOGIST (2018)

Article Biotechnology & Applied Microbiology

The association of hormone signalling genes, transcription and changes in shoot anatomy during moso bamboo growth

Long Li et al.

PLANT BIOTECHNOLOGY JOURNAL (2018)

Article Multidisciplinary Sciences

Critical roles of DNA demethylation in the activation of ripening-induced genes and inhibition of ripening-repressed genes in tomato fruit

Zhaobo Lang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Review Plant Sciences

Epigenetics for Plant Improvement: Current Knowledge and Modeling Avenues

Philippe Gallusci et al.

TRENDS IN PLANT SCIENCE (2017)

Article Multidisciplinary Sciences

Mobile small RNAs regulate genome-wide DNA methylation

Mathew G. Lewsey et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Multidisciplinary Sciences

DNA methylome of the 20-gigabase Norway spruce genome

Israel Ausin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Biotechnology & Applied Microbiology

Widespread natural variation of DNA methylation within angiosperms

Chad E. Niederhuth et al.

GENOME BIOLOGY (2016)

Article Multidisciplinary Sciences

CG gene body DNA methylation changes and evolution of duplicated genes in cassava

Haifeng Wang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Biochemistry & Molecular Biology

Genome-Wide Analysis of DNA Methylation in Soybean

Qing-Xin Song et al.

MOLECULAR PLANT (2013)

Review Cell Biology

Regulation and function of DNA methylation in plants and animals

Xin-Jian He et al.

CELL RESEARCH (2011)

Review Plant Sciences

Small RNA-mediated epigenetic modifications in plants

Stacey A. Simon et al.

CURRENT OPINION IN PLANT BIOLOGY (2011)

Article Biotechnology & Applied Microbiology

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

Jordana T. Bell et al.

GENOME BIOLOGY (2011)

Article Biochemical Research Methods

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson et al.

BIOINFORMATICS (2010)

Article Plant Sciences

Identification of genes related to the development of bamboo rhizome bud

Kuihong Wang et al.

JOURNAL OF EXPERIMENTAL BOTANY (2010)

Article Multidisciplinary Sciences

Conservation and divergence of methylation patterning in plants and animals

Suhua Feng et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation

Assaf Zemach et al.

SCIENCE (2010)

Review Plant Sciences

MYB transcription factors in Arabidopsis

Christian Dubos et al.

TRENDS IN PLANT SCIENCE (2010)

Article Genetics & Heredity

Small RNA-Directed epigenetic natural variation in Arabidopsis thaliana

Jixian Zhai et al.

PLOS GENETICS (2008)

Article Biochemical Research Methods

ImageJ for microscopy

Tony J. Collins

BIOTECHNIQUES (2007)

Review Genetics & Heredity

Transposable elements and the epigenetic regulation of the genome

R. Keith Slotkin et al.

NATURE REVIEWS GENETICS (2007)

Review Plant Sciences

Epigenetics and plant evolution

RA Rapp et al.

NEW PHYTOLOGIST (2005)