Related references
Note: Only part of the references are listed.Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis
Benjamin Lau et al.
EMBO REPORTS (2023)
Structure of nascent 5S RNPs at the crossroad between ribosome assembly and MDM2-p53 pathways
Nestor Miguel Castillo Duque de Estrada et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2023)
Concurrent remodelling of nucleolar 60S subunit precursors by the Rea1 ATPase and Spb4 RNA helicase
Valentin Mitterer et al.
eLife (2023)
Principles of human pre-60S biogenesis
Arnaud Vanden Broeck et al.
SCIENCE (2023)
Rixosomal RNA degradation contributes to silencing of Polycomb target genes
Haining Zhou et al.
NATURE (2022)
UCSF ChimeraX: Structure visualization for researchers, educators, and developers
Eric F. Pettersen et al.
PROTEIN SCIENCE (2021)
Dynamic association of human Ebp1 with the ribosome
Varun Bhaskar et al.
RNA (2021)
Highly accurate protein structure prediction with AlphaFold
John Jumper et al.
NATURE (2021)
Nucleolar maturation of the human small subunit processome
Sameer Singh et al.
SCIENCE (2021)
Positioning Heterochromatin at the Nuclear Periphery Suppresses Histone Turnover to Promote Epigenetic Inheritance
Sahana Holla et al.
CELL (2020)
Heterochromatin protein 1α interacts with parallel RNA and DNA G-quadruplexes
Ruby J. Roach et al.
NUCLEIC ACIDS RESEARCH (2020)
MAC: Merging Assemblies by Using Adjacency Algebraic Model and Classification
Li Tang et al.
FRONTIERS IN GENETICS (2020)
A conserved RNA degradation complex required for spreading and epigenetic inheritance of heterochromatin
Gergana Shipkovenska et al.
ELIFE (2020)
Construction of the Central Protuberance and L1 Stalk during 60S Subunit Biogenesis
Lukas Kater et al.
MOLECULAR CELL (2020)
Coupling of 5S RNP rotation with maturation of functional centers during large ribosomal subunit assembly
Jelena Micic et al.
NATURE COMMUNICATIONS (2020)
Structural snapshots of human pre-60S ribosomal particles before and after nuclear export
Xiaomeng Liang et al.
NATURE COMMUNICATIONS (2020)
Cryo-EM structure of 90S small ribosomal subunit precursors in transition states
Yifei Du et al.
SCIENCE (2020)
Cryo-EM structure of an early precursor of large ribosomal subunit reveals a half-assembled intermediate
Dejian Zhou et al.
PROTEIN & CELL (2019)
Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration
Jingdong Cheng et al.
MOLECULAR CELL (2019)
Cryo-EM reveals active site coordination within a multienzyme pre-rRNA processing complex
Monica C. Pilion et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2019)
Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix
Dorothee Liebschner et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2019)
Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs
Tristan Bepler et al.
NATURE METHODS (2019)
Eukaryotic Ribosome Assembly
Jochen Bassler et al.
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 88 (2019)
Ribosome assembly coming into focus
Sebastian Klinge et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2019)
fastp: an ultra-fast all-in-one FASTQ preprocessor
Shifu Chen et al.
BIOINFORMATICS (2018)
Modular assembly of the nucleolar pre-60S ribosomal subunit
Zahra Assur Sanghai et al.
NATURE (2018)
SWISS-MODEL: homology modelling of protein structures and complexes
Andrew Waterhouse et al.
NUCLEIC ACIDS RESEARCH (2018)
Structure of the nuclear exosome captured on a maturing preribosome
Jan Michael Schuller et al.
SCIENCE (2018)
MUMmer4: A fast and versatile genome alignment system
Guillaume Marcais et al.
PLOS COMPUTATIONAL BIOLOGY (2018)
ISOLDE: a physically realistic environment for model building into low-resolution electron-density maps
Tristan Ian Croll
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2018)
New tools for automated high-resolution cryo-EM structure determination in RELION-3
Jasenko Zivanov et al.
ELIFE (2018)
MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy
Shawn Q. Zheng et al.
NATURE METHODS (2017)
cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination
Ali Punjani et al.
NATURE METHODS (2017)
Preribosomes escaping from the nucleus are caught during translation by cytoplasmic quality control
Anshuk Sarkar et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)
3.2-Å-resolution structure of the 90S preribosome before A1 pre-rRNA cleavage
Jingdong Cheng et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)
Grc3 programs the essential endoribonuclease Las1 for specific RNA cleavage
Monica C. Pillon et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Reconstitution of the complete pathway of ITS2 processing at the pre-ribosome
Lisa Fromm et al.
NATURE COMMUNICATIONS (2017)
Preribosomes escaping from the nucleus are caught during translation by cytoplasmic quality control
Anshuk Sarkar et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)
3.2-Å-resolution structure of the 90S preribosome before A1 pre-rRNA cleavage
Jingdong Cheng et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)
Molecular architecture of the 90S small subunit pre-ribosome
Qi Sun et al.
ELIFE (2017)
Visualizing the Assembly Pathway of Nucleolar Pre-60S Ribosomes
Lukas Kater et al.
CELL (2017)
Architecture of the Rix1-Rea1 checkpoint machinery during pre-60S-ribosome remodeling
Clara Barrio-Garcia et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)
Concerted removal of the Erb1-Ytm1 complex in ribosome biogenesis relies on an elaborate interface
Matthias Thoms et al.
NUCLEIC ACIDS RESEARCH (2016)
Architecture of the Rix1-Rea1 checkpoint machinery during pre-60S-ribosome remodeling
Clara Barrio-Garcia et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)
Architecture of the 90S Pre-ribosome: A Structural View on the Birth of the Eukaryotic Ribosome
Markus Kornprobst et al.
CELL (2016)
Diverse roles of assembly factors revealed by structures of late nuclear pre-60S ribosomes
Shan Wu et al.
NATURE (2016)
Developing genetic tools to exploit Chaetomium thermophilum for biochemical analyses of eukaryotic macromolecular assemblies
Nikola Kellner et al.
SCIENTIFIC REPORTS (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
The Exosome Is Recruited to RNA Substrates through Specific Adaptor Proteins
Matthias Thoms et al.
CELL (2015)
CTFFIND4: Fast and accurate defocus estimation from electron micrographs
Alexis Rohou et al.
JOURNAL OF STRUCTURAL BIOLOGY (2015)
Coordinated Ribosomal ITS2 RNA Processing by the Las1 Complex Integrating Endonuclease, Polynucleotide Kinase, and Exonuclease Activities
Lisa Gasse et al.
MOLECULAR CELL (2015)
Structural and functional analysis of the Rpf2-Rrs1 complex in ribosome biogenesis
Nozomi Asano et al.
NUCLEIC ACIDS RESEARCH (2015)
The structure of Rpf2-Rrs1 explains its role in ribosome biogenesis
Satyavati Kharde et al.
NUCLEIC ACIDS RESEARCH (2015)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
60S ribosome biogenesis requires rotation of the 5S ribonucleoprotein particle
Christoph Leidig et al.
NATURE COMMUNICATIONS (2014)
QUAST: quality assessment tool for genome assemblies
Alexey Gurevich et al.
BIOINFORMATICS (2013)
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
Helga Thorvaldsdottir et al.
BRIEFINGS IN BIOINFORMATICS (2013)
Ribosome Biogenesis in the Yeast Saccharomyces cerevisiae
John L. Woolford et al.
GENETICS (2013)
Las1 interacts with Grc3 polynucleotide kinase and is required for ribosome synthesis in Saccharomyces cerevisiae
Christopher D. Castle et al.
NUCLEIC ACIDS RESEARCH (2013)
DELLY: structural variant discovery by integrated paired-end and split-read analysis
Tobias Rausch et al.
BIOINFORMATICS (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
The Evolutionarily Conserved Protein LAS1 Is Required for Pre-rRNA Processing at Both Ends of ITS2
Stephanie Schillewaert et al.
MOLECULAR AND CELLULAR BIOLOGY (2012)
LAS1L interacts with the mammalian Rix1 complex to regulate ribosome biogenesis
Christopher D. Castle et al.
MOLECULAR BIOLOGY OF THE CELL (2012)
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
Ruibang Luo et al.
GIGASCIENCE (2012)
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
Heng Li
BIOINFORMATICS (2011)
A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease
Sander Granneman et al.
EMBO JOURNAL (2011)
Fast and accurate long-read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2010)
Las1L Is a Nucleolar Protein Required for Cell Proliferation and Ribosome Biogenesis
Christopher D. Castle et al.
MOLECULAR AND CELLULAR BIOLOGY (2010)
The AAA-ATPase Rea1 Drives Removal of Biogenesis Factors during Multiple Stages of 60S Ribosome Assembly
Jochen Bassler et al.
MOLECULAR CELL (2010)
Mechanochemical Removal of Ribosome Biogenesis Factors from Nascent 60S Ribosomal Subunits
Cornelia Ulbrich et al.
CELL (2009)
The AAA ATPase Rix7 powers progression of ribosome biogenesis by stripping Nsa1 from pre-60S particles
Dieter Kressler et al.
JOURNAL OF CELL BIOLOGY (2008)
Assembly factors Rpf2 and Rrs1 recruit 5S rRNA and ribosomal proteins rpL5 and rpL11 into nascent ribosomes
Jingyu Zhang et al.
GENES & DEVELOPMENT (2007)
EMAN2: An extensible image processing suite for electron microscopy
Guang Tang et al.
JOURNAL OF STRUCTURAL BIOLOGY (2007)
Ytm1, Nop7, and Erb1 form a complex necessary for maturation of yeast 66S preribosomes
TD Miles et al.
MOLECULAR AND CELLULAR BIOLOGY (2005)
Coot:: model-building tools for molecular graphics
P Emsley et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2004)
90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors
P Grandi et al.
MOLECULAR CELL (2002)
A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis
F Dragon et al.
NATURE (2002)
Thermoadaptation of a mesophilic hygromycin B phosphotransferase by directed evolution in hyperthermophilic Archaea:: selection of a stable genetic marker for DNA transfer into Sulfolobus solfataricus
R Cannio et al.
EXTREMOPHILES (2001)
RRS1, a conserved essential gene, encodes a novel regulatory protein required for ribosome biogenesis in Saccharomyces cerevisiae
A Tsuno et al.
MOLECULAR AND CELLULAR BIOLOGY (2000)
A simple method for extraction of fungal genomic DNA
TH Al-Samarrai et al.
LETTERS IN APPLIED MICROBIOLOGY (2000)