4.7 Review

Analysis of meristems and plant regeneration at single-cell resolution

Related references

Note: Only part of the references are listed.
Article Biotechnology & Applied Microbiology

Single-cell transcriptomics unveils xylem cell development and evolution

Chia-Chun Tung et al.

Summary: By analyzing the transcriptomes of different xylem cell types in four woody angiosperms, this study reveals the developmental lineages and evolutionary relationships of ray and fusiform cells. The results show that ray cells have highly conserved lineages across angiosperms, while fusiform cells exhibit variations. The study also demonstrates the transcriptomic similarity between tracheids and vessel elements in Trochodendron aralioides, a basal eudicot with a reversed developmental trait. Overall, this evo-devo framework provides a comprehensive understanding of xylem cell lineages across diverse plant species.

GENOME BIOLOGY (2023)

Article Cell Biology

A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants

Rachel Shahan et al.

Summary: This study constructed a comprehensive atlas at single-cell resolution to investigate the gene expression dynamics and transcriptional regulators during Arabidopsis root development. The results revealed tissue trans-differentiation and provided insights into cell identity determination and organ development regulation.

DEVELOPMENTAL CELL (2022)

Article Plant Sciences

A rice single cell transcriptomic atlas defines the developmental trajectories of rice floret and inflorescence meristems

Jie Zong et al.

Summary: This study used high-throughput single-cell RNA sequencing to construct a gene expression resource and revealed the transcriptomic atlas of early rice inflorescence development, providing insights into axillary meristem differentiation and floret development.

NEW PHYTOLOGIST (2022)

Article Biotechnology & Applied Microbiology

Single-cell RNA sequencing profiles of stem-differentiating xylem in poplar

Jianbo Xie et al.

PLANT BIOTECHNOLOGY JOURNAL (2022)

Article Plant Sciences

Single-cell transcriptomics sheds light on the identity and metabolism of developing leaf cells

Ruben Tenorio Berrio et al.

Summary: Profiling young Arabidopsis leaves at the single-cell level provides insights into the distribution, development, and sensitivity to drought of different cell populations. The study identified 14 cell populations in young leaves, including subpopulations with distinct identity or metabolic activity.

PLANT PHYSIOLOGY (2022)

Article Plant Sciences

The genome and preliminary single-nuclei transcriptome of Lemna minuta reveals mechanisms of invasiveness

Bradley W. Abramson et al.

Summary: Tracing every cell in plants, especially in the diminutive model plant Arabidopsis, is challenging due to the complexity of cell number and development. The genome and preliminary cell map of the Lesser Duckweed Lemna minuta provide evidence that tandem gene duplication and tissue-specific expression contribute to invasiveness.

PLANT PHYSIOLOGY (2022)

Article Genetics & Heredity

Single-Cell Transcriptome and Network Analyses Unveil Key Transcription Factors Regulating Mesophyll Cell Development in Maize

Shentong Tao et al.

Summary: This study reveals the involvement of several transcription factor families, including HSF and COL, in the regulation of maize mesophyll cell development at different stages, with the involvement of epigenetic regulation.

GENES (2022)

Article Developmental Biology

Single-cell genomics revolutionizes plant development studies across scales

Mingyuan Zhu et al.

Summary: The development of tissues, organs, and organisms can be better understood through the study of single-cell genomics. In plant development, single-cell transcriptomics has advantages due to the lack of cell migration and the presence of persistent stem cell populations. Recent advancements in single-cell and single-nucleus isolation techniques in plants have provided diverse experimental approaches, resulting in a wealth of information across different tissues and species. This has allowed for the comprehensive analysis of single-cell genomics in various plant organs and the exploration of developmental trajectories among different cell types. Comparative analysis of tissues and organs at a single-cell level has also been pursued. Single-cell genomics is becoming increasingly important in unraveling how plant organs emerge from stem cell populations.

DEVELOPMENT (2022)

Article Biochemistry & Molecular Biology

Identification of the Regulators of Epidermis Development under Drought- and Salt-Stressed Conditions by Single-Cell RNA-Seq

Zhixin Liu et al.

Summary: Plants, as sessile organisms, face challenges from the external environment and have evolved sophisticated adaptation strategies to survive. However, our understanding of the signaling pathways regulating plant response to environmental stress is limited. This study used single-cell RNA-Seq to analyze the expression pattern of PIF genes in leaf epidermal cells and found that they may play a role in mediating the development of these cells under drought and salt stress. These findings provide new insights into the molecular mechanism of plant adaptation to adverse growth environments.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2022)

Article Multidisciplinary Sciences

Chemical reprogramming of human somatic cells to pluripotent stem cells

Jingyang Guan et al.

Summary: This study demonstrates the chemical reprogramming of human somatic cells to human chemically induced pluripotent stem cells, which exhibit key features of embryonic stem cells. The induction of an intermediate plastic state and inhibition of the JNK pathway are crucial for successful chemical reprogramming.

NATURE (2022)

Article Plant Sciences

Identification of novel regulators required for early development of vein pattern in the cotyledons by single-cell RNA-sequencing

Zhixin Liu et al.

Summary: In this study, we comprehensively characterized the early differentiation and development of leaf veins in 3-day-old cotyledons based on single-cell transcriptome analysis. We identified the cell types and novel marker genes of leaf veins and characterized the novel regulators of leaf vein.

PLANT JOURNAL (2022)

Article Multidisciplinary Sciences

A conserved superlocus regulates above-and belowground root initiation

Moutasem Omary et al.

Summary: Plants continuously form new organs in response to environmental cues. We studied the development of shoot-borne roots in tomato and found that these roots originate from phloem-associated cells through a unique transition state. This state requires the activity of a transcription factor called SBRL. Evolutionary analysis revealed the conservation of SBRL's function and regulation in angiosperms and its ancient duplication, with paralogs controlling wound-induced and lateral root initiation.

SCIENCE (2022)

Article Multidisciplinary Sciences

A 3D gene expression atlas of the floral meristem based on spatial reconstruction of single nucleus RNA sequencing data

Manuel Neumann et al.

Summary: Cellular heterogeneity in growth and differentiation leads to organ patterning. Single-cell transcriptomics allows the study of gene expression heterogeneity in developing organs at an unprecedented resolution, but it loses the original physical location information of cells. This article proposes a method that combines single-nuclei RNA-seq with microscopy-based 3D spatial reconstruction to reconstruct the genome-wide gene expression patterns of individual cells in a 3D flower meristem, and to investigate gene expression differences among meristematic domains giving rise to different tissue and organ types.

NATURE COMMUNICATIONS (2022)

Article Biochemistry & Molecular Biology

Leaf cell-specific and single-cell transcriptional profiling reveals a role for the palisade layer in UV light protection

Carl Procko et al.

Summary: Leaf cell sorting and scRNA-seq approaches were used to transcriptomically profile the palisade mesophyll layer, revealing that despite their unique morphology, palisade cells are transcriptionally similar to other photosynthetic cell types. However, certain phenylpropanoid genes in the palisade have enriched expression and are light-regulated, contributing to the production of UV protectant sinapoylmalate.

PLANT CELL (2022)

Article Biochemistry & Molecular Biology

Differentiation trajectories and biofunctions of symbiotic and un-symbiotic fate cells in root nodules of Medicago truncatula

Qinyi Ye et al.

Summary: This study revealed the differentiation trajectories and interconnection of cells in root nodules using single-cell RNA sequencing. A spatial and functional cellular map was constructed, and it was found that apical meristematic cells in the nodules develop into symbiotic and un-symbiotic fate cells. In addition, the study discovered the specific functions and interrelationships of different cell clusters in the nodules.

MOLECULAR PLANT (2022)

Article Biochemistry & Molecular Biology

Cell-specific pathways recruited for symbiotic nodulation in the Medicago truncatula legume

Sergio Alan Cervantes-Perez et al.

Summary: This study used single nuclei RNA-seq to analyze the early response to rhizobial infection in Medicago roots. A gene expression map of the Medicago root was generated, revealing known and novel genes and pathways involved in the symbiotic relationship between legumes and rhizobia. This comprehensive analysis provides insights into cell type-specific responses during root symbiosis.

MOLECULAR PLANT (2022)

Article Biotechnology & Applied Microbiology

Single-cell transcriptome reveals differentiation between adaxial and abaxial mesophyll cells in Brassica rapa

Xinlei Guo et al.

PLANT BIOTECHNOLOGY JOURNAL (2022)

Article Biology

Chromatin accessibility illuminates single-cell regulatory dynamics of rice root tips

Dan Feng et al.

Summary: In this study, the authors used single-cell ATAC-seq technology to sequence rice root tip cells, revealing cell type-specific accessibility differences during root development and identifying sets of transcription factors associated with accessible chromatin regions. They also described chromatin responses to heat and identified cell type-specific accessibility changes. This work provides a framework for understanding the regulatory dynamics of this important crop organ.

BMC BIOLOGY (2022)

Article Biochemistry & Molecular Biology

Transcriptional landscapes of de novo root regeneration from detached Arabidopsis leaves revealed by time-lapse and single-cell RNA sequencing analyses

Wu Liu et al.

Summary: This study provides a comprehensive transcriptional framework of de novo root regeneration (DNRR) in detached Arabidopsis leaves through time-lapse RNA sequencing. It reveals the rapid activation of jasmonate, ethylene, and reactive oxygen species pathways in response to wounding, suggesting their roles as wound signals to promote DNRR. Additionally, key factors involved in DNRR, including genes controlling aboveground and root organogenesis, as well as wound-induced regeneration, are identified.

PLANT COMMUNICATIONS (2022)

Article Plant Sciences

A root phloem pole cell atlas reveals common transcriptional states in protophloem-adjacent cells

Sofia Otero et al.

Summary: This study provides a detailed analysis of the phloem poles using a second-generation single-cell approach, revealing the similarities in gene regulatory networks and developmental trajectories associated with phloem development. Additionally, a set of key transcription factors that play a crucial role in the early development of the phloem have been identified.

NATURE PLANTS (2022)

Article Biology

Plant single-cell solutions for energy and the environment

Benjamin Cole et al.

Summary: This Perspective discusses the opportunities and challenges brought by single-cell technologies in the fields of energy and environmental science, emphasizing the need to develop better and more comprehensive single-cell technologies, analysis and visualization tools, as well as tissue preparation methods. It also calls for the establishment of a centralized, open-access database to store plant single-cell data and to balance the need for deep characterization of select model species while still capturing the diversity in the plant kingdom.

COMMUNICATIONS BIOLOGY (2021)

Article Cell Biology

Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery

Xiaosa Xu et al.

Summary: The researchers investigated the transcriptional profiles of 12,525 single cells from developing maize ears, constructing a developmental atlas and validating the results through various methods. They pointed out that these data may facilitate genetic studies by predicting genetic redundancy, integrating transcriptional networks, and identifying candidate genes associated with crop yield traits.

DEVELOPMENTAL CELL (2021)

Article Cell Biology

Cell-cell contact and signaling in the muscle stem cell niche

Allison P. Kann et al.

Summary: This article discusses the importance of direct contact between muscle stem cells and their neighbors, emphasizing the impact of changes in the niche during quiescence and injury on cell proliferation, self-renewal, and differentiation.

CURRENT OPINION IN CELL BIOLOGY (2021)

Review Biochemistry & Molecular Biology

Single-Cell Transcriptome Analysis in Plants: Advances and Challenges

Rahul Shaw et al.

Summary: The adoption of single-cell RNA sequencing technology has revolutionized the transcriptome analysis, allowing for better understanding of tissue and cellular heterogeneity and rapid identification of rare cell types. In the field of plant sciences, single-cell transcriptome profiling is in its early stages and presents exciting challenges to overcome.

MOLECULAR PLANT (2021)

Article Biochemistry & Molecular Biology

Single-nucleus RNA and ATAC sequencing reveals the impact of chromatin accessibility on gene expression in Arabidopsis roots at the single-cell level

Andrew Farmer et al.

Summary: Plants consist of diverse and specialized cell types, with unique biological functions regulated by cell-type-specific transcriptional programs. Single-nucleus RNA sequencing and single-nucleus assay for transposase accessible chromatin sequencing technologies can establish plant cell-type-specific transcriptomes and uncover additional cell subtypes. The differential chromatin accessibility is a critical mechanism to regulate gene activity at the cell-type level.

MOLECULAR PLANT (2021)

Article Biochemistry & Molecular Biology

Transcriptional landscape of rice roots at the single-cell resolution

Qing Liu et al.

Summary: This study analyzed the transcriptomes of rice root tip cells, identifying major cell types and defining novel cell-type-specific marker genes for two cultivars. The research found divergent cell types associated with phytohormone biosynthesis, signaling, and response in rice. Significant differences in cell-type transcript profiles between Arabidopsis and rice were also detected, emphasizing the importance of analyzing tissues across diverse model species.

MOLECULAR PLANT (2021)

Article Multidisciplinary Sciences

Macrophages provide a transient muscle stem cell niche via NAMPT secretion

Dhanushika Ratnayake et al.

Summary: Through muscle injury models in zebrafish, it has been found that specific macrophage populations 'dwell' within the injury site, providing a transient niche for stem cell proliferation. The signals released by these macrophages directly stimulate stem cell proliferation, governing the repair process.

NATURE (2021)

Article Multidisciplinary Sciences

Cell-by-cell dissection of phloem development links a maturation gradient to cell specialization

Pawel Roszak et al.

Summary: In plant meristems, tissue-wide maturation gradients in coordination with specialized cell networks establish developmental phases for indeterminate growth. Single-cell transcriptomics was used to reconstruct the developmental trajectory of protophloem in Arabidopsis thaliana roots, revealing the role of PHLOEM EARLY DNA-BINDING-WITH-ONE-FINGER (PEAR) transcription factors in lineage bifurcation and differentiation.

SCIENCE (2021)

Article Multidisciplinary Sciences

Ground tissue circuitry regulates organ complexity in maize and Setaria

Carlos Ortiz-Ramirez et al.

Summary: A cell-resolution map of maize root was generated using single-cell RNA sequencing, revealing an alternative configuration of the tissue formative transcription factor SHR. The study shows that the SHR pathway controls the expansion of cortical tissue, impacting the anatomical complexity of plants.

SCIENCE (2021)

Review Plant Sciences

Advances and Opportunities in Single-Cell Transcriptomics for Plant Research

Carolin Seyfferth et al.

Summary: The advancements in single-cell technologies are rapidly expanding applications in plant biology, providing comprehensive guidelines from sample preparation to data analysis. These technologies will accelerate and shape plant-specific research in the near future.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 72, 2021 (2021)

Article Biochemistry & Molecular Biology

A cis-regulatory atlas in maize at single-cell resolution

Alexandre P. Marand et al.

Summary: By analyzing single-cell genomics data from six maize organs, researchers identified cis-regulatory factors and trans-regulatory factors, revealing the crucial role of cell-type-specific regulatory elements in gene expression regulation, and developed the single-cell analysis software Socrates for studying cis-regulatory variation in various species.
Article Cell Biology

A single-cell analysis of the Arabidopsis vegetative shoot apex

Tian-Qi Zhang et al.

Summary: This study utilized single-cell RNA sequencing to analyze the cellular taxonomy of the shoot apex of Arabidopsis plant, revealing highly heterogeneous cell structures that can be divided into 7 main populations with 23 transcriptionally distinct cell clusters. The findings provide insights into the basic principles of cell division and differentiation in plants.

DEVELOPMENTAL CELL (2021)

Article Cell Biology

Single-cell resolution of lineage trajectories in the Arabidopsis stomatal lineage and developing leaf

Camila B. Lopez-Anido et al.

Summary: The study investigates the development and regulation of stomatal lineage in Arabidopsis leaf epidermis, revealing detailed cell differentiation processes using single-cell transcriptomics and genetics. It identifies the extended role of transcriptional regulator in reinforcing cell fate commitment through integration of genome-scale datasets and precise functional manipulations.

DEVELOPMENTAL CELL (2021)

Article Multidisciplinary Sciences

Single-cell transcriptome atlas and chromatin accessibility landscape reveal differentiation trajectories in the rice root

Tian-Qi Zhang et al.

Summary: Through single-cell RNA sequencing and chromatin accessibility survey, researchers profiled gene expression of different cell types during rice root development, elucidating regulatory networks and characteristic processes underlying root development.

NATURE COMMUNICATIONS (2021)

Review Genetics & Heredity

Genetics of Shoot Meristem and Shoot Regeneration

Leor Eshed Williams

Summary: Plants demonstrate remarkable lineage plasticity, regenerating organs different from their origins. Cell flow in shoot apical meristem requires complex genetic network control, with WUSCHEL transcription factor and cytokinin playing key roles.

ANNUAL REVIEW OF GENETICS, VOL 55 (2021)

Article Plant Sciences

Single-cell analysis of cell identity in the Arabidopsis root apical meristem: insights and opportunities

Rachel Shahan et al.

Summary: Researchers have successfully reconstructed developmental trajectories, characterized cell identity mutants at unprecedented resolution, and revealed cell type-specific responses to environmental stimuli through single-cell mRNA sequencing and chromatin accessibility datasets generated from Arabidopsis roots.

JOURNAL OF EXPERIMENTAL BOTANY (2021)

Article Biochemistry & Molecular Biology

Single-cell transcriptome atlas of the leaf and root of rice seedlings

Yu Wang et al.

Summary: This study used single-cell RNA sequencing to analyze the transcriptome features of rice seedlings' leaves and roots, revealing different cell types and cell type-specific transcriptional regulation in response to environmental stresses. Additionally, the research identified changes in cell populations in response to stress and investigated the underlying molecular mechanisms through single-cell reconstruction of the developmental trajectory.

JOURNAL OF GENETICS AND GENOMICS (2021)

Article Biochemistry & Molecular Biology

Single-cell RNA sequencing reveals a high-resolution cell atlas of xylem in Populus

Hui Li et al.

Summary: High-throughput single-cell RNA sequencing was used to analyze protoplasts from the differentiating xylem of Populus alba x Populus glandulosa, revealing distinct cell clusters and differentially expressed genes. The differentiation trajectories of wood cells were uncovered, along with key regulators during developmental stages of xylem cell differentiation. This study provides a valuable high-resolution expression atlas of wood formation at the single cell level.

JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2021)

Article Biochemistry & Molecular Biology

A single-cell morpho-transcriptomic map of brassinosteroid action in the Arabidopsis root

Moritz Graeff et al.

Summary: Brassinosteroid signaling has a significant impact on the orientation of cell division and anisotropic cell expansion, playing a crucial role in root development. Additionally, it can affect neighboring and distant cells through non-cell-autonomous functions, ultimately restoring growth vigor.

MOLECULAR PLANT (2021)

Article Biochemistry & Molecular Biology

Reconstruction of lateral root formation through single-cellRNAsequencing reveals order of tissue initiation

Laura Serrano-Ron et al.

Summary: The research used single-cell RNA sequencing to reveal the ontogeny of lateral root primordium in Arabidopsis, demonstrating a rapid reprogramming and splitting process of precursor cells into ground tissue/stem cell niche and vascular precursor fates, ultimately forming a lateral root with cells capable of replacement.

MOLECULAR PLANT (2021)

Article Biotechnology & Applied Microbiology

Single-cell RNA-seq describes the transcriptome landscape and identifies critical transcription factors in the leaf blade of the allotetraploid peanut (Arachis hypogaea L.)

Hao Liu et al.

Summary: The study successfully developed a protoplast cell isolation system in peanut leaves and used scRNA-seq to analyze the developmental trajectory of transcription factors in different cell types during leaf growth. It was found that palisade cells differentiate into spongy cells and epidermal cells originate earlier than primordium. The developed method efficiently validated the scRNA-seq results and provided significant insights into plant cell differentiation.

PLANT BIOTECHNOLOGY JOURNAL (2021)

Article Multidisciplinary Sciences

Stochastic gene expression drives mesophyll protoplast regeneration

Mengxue Xu et al.

Summary: This study identified two transcription factors whose ectopic activation promotes protoplast regeneration, and found that isolating protoplasts induces enhanced expression variation at the genome level. Isolating protoplasts also leads to genome-wide increases in chromatin accessibility, which enhances protoplast regeneration by promoting stochastic activation of gene expression.

SCIENCE ADVANCES (2021)

Article Biotechnology & Applied Microbiology

Transcriptional landscape of highly lignified poplar stems at single-cell resolution

Yang Chen et al.

Summary: This study utilized optimized single-cell RNA sequencing technology to reveal the transcriptional landscape of cell types in highly lignified poplar stems. Different cell clusters with distinct phytohormone response patterns were identified, allowing reconstruction of cell differentiation trajectories involved in phloem and xylem development.

GENOME BIOLOGY (2021)

Article Plant Sciences

Pluripotency acquisition in the middle cell layer of callus is required for organ regeneration

Ning Zhai et al.

Summary: Single-cell profiling of callus from hypocotyl explants reveals the heterogeneity and gene networks crucial for plant regeneration, highlighting the essential roles of WOX5 and WOX7. The tissue structure and molecular interactions within the callus are similar to root primordium, with WOX5 promoting endogenous auxin production and interacting with key regulators to enhance pluripotency and organ regeneration.

NATURE PLANTS (2021)

Article Biochemistry & Molecular Biology

A single-cell view of the transcriptome during lateral root initiation in Arabidopsis thaliana

Hardik P. Gala et al.

Summary: Root architecture plays a crucial role in plant fitness, with modifications in response to environmental stimuli. Lateral root development is well-studied, but early steps remain unclear. Single-cell sequencing methods allow isolation of transcriptional changes in cells undergoing lateral root initiation, revealing upregulated genes. The study also identified specific cells responding to lateral root initiation, highlighting the coordination required for this fate transition.

PLANT CELL (2021)

Article Biotechnology & Applied Microbiology

FlsnRNA-seq: protoplasting-free full-length single-nucleus RNA profiling in plants

Yanping Long et al.

Summary: The study introduces a protoplasting-free approach for large-scale full-length RNA profiling at a single-nucleus level in plants, demonstrating its robustness in Arabidopsis root cells and developing endosperm. The method allows for uncovering alternative splicing and polyadenylation-related RNA isoform information at the single-cell level, facilitating the characterization of cell identities.

GENOME BIOLOGY (2021)

Article Biochemistry & Molecular Biology

Distinct identities of leaf phloem cells revealed by sin e cell transcriptomics

Ji-Yun Kim et al.

Summary: In this study, single-cell transcriptome analysis of leaf vasculature revealed unique metabolic patterns of phloem parenchyma cells and explored the kinship relation of vascular cell types.

PLANT CELL (2021)

Review Plant Sciences

Single-Cell Transcriptomics: A High-Resolution Avenue for Plant Functional Genomics

Charlotte Rich-Griffin et al.

TRENDS IN PLANT SCIENCE (2020)

Article Plant Sciences

Time-Series Single-Cell RNA-Seq Data Reveal Auxin Fluctuation during Endocycle

Kotaro Torii et al.

PLANT AND CELL PHYSIOLOGY (2020)

Article Biochemistry & Molecular Biology

Global Dynamic Molecular Profiling of Stomatal Lineage Cell Development by Single-Cell RNA Sequencing

Zhixin Liu et al.

MOLECULAR PLANT (2020)

Article Multidisciplinary Sciences

Plant stem-cell organization and differentiation at single-cell resolution

James W. Satterlee et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Review Plant Sciences

Molecular Mechanisms of Plant Regeneration

Momoko Ikeuchi et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 70 (2019)

Article Biochemistry & Molecular Biology

A Single-Cell RNA Sequencing Profiles the Developmental Landscape of Arabidopsis Root

Tian-Qi Zhang et al.

MOLECULAR PLANT (2019)

Review Plant Sciences

Towards Building a Plant Cell Atlas

Seung Y. Rhee et al.

TRENDS IN PLANT SCIENCE (2019)

Article Cell Biology

High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types

Christine N. Shulse et al.

CELL REPORTS (2019)

Article Cell Biology

Molecular Mechanisms Driving Switch Behavior in Xylem Cell Differentiation

Gina M. Turco et al.

CELL REPORTS (2019)

Review Cell Biology

Regulation of Division and Differentiation of Plant Stem Cells

Edith Pierre-Jerome et al.

ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY, VOL 34 (2018)

Review Genetics & Heredity

Power in Numbers: Single-Cell RNA-Seq Strategies to Dissect Complex Tissues

Kenneth D. Birnbaum

ANNUAL REVIEW OF GENETICS, VOL 52 (2018)

Review Multidisciplinary Sciences

The plant perceptron connects environment to development

Ben Scheres et al.

NATURE (2017)

Article Biochemistry & Molecular Biology

A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration

Tian-Qi Zhang et al.

PLANT CELL (2017)

Review Plant Sciences

Plant Systems Biology at the Single-Cell Level

Marc Libault et al.

TRENDS IN PLANT SCIENCE (2017)

Article Biochemistry & Molecular Biology

Root Regeneration Triggers an Embryo-like Sequence Guided by Hormonal Interactions

Idan Efroni et al.

Review Biochemistry & Molecular Biology

Plant Stem Cells

Thomas Greb et al.

CURRENT BIOLOGY (2016)

Review Developmental Biology

Plant regeneration: cellular origins and molecular mechanisms

Momoko Ikeuchi et al.

DEVELOPMENT (2016)

Review Plant Sciences

Signaling in shoot and flower meristems of Arabidopsis thaliana

Anna L. Holt et al.

CURRENT OPINION IN PLANT BIOLOGY (2014)

Review Biochemistry & Molecular Biology

Stem cell function during plant vascular development

Shunsuke Miyashima et al.

EMBO JOURNAL (2013)

Review Biochemistry & Molecular Biology

Plant Callus: Mechanisms of Induction and Repression

Momoko Ikeuchi et al.

PLANT CELL (2013)

Review Plant Sciences

Plant Stem Cell Niches

Ernst Aichinger et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 63 (2012)

Article Multidisciplinary Sciences

Clonogenic Neoblasts Are Pluripotent Adult Stem Cells That Underlie Planarian Regeneration

Daniel E. Wagner et al.

SCIENCE (2011)

Article Multidisciplinary Sciences

Organ regeneration does not require a functional stem cell niche in plants

Giovanni Sena et al.

NATURE (2009)

Article Biochemistry & Molecular Biology

Plant stem cell niches: Standing the test of time

Jose R. Dinneny et al.

Review Biochemistry & Molecular Biology

Slicing across kingdoms: Regeneration in plants and animals

Kenneth D. Birnbaum et al.

Article Multidisciplinary Sciences

A molecular framework for plant regeneration

J Xu et al.

SCIENCE (2006)